* using log directory ‘/srv/hornik/tmp/CRAN/DescTools.Rcheck’
* using R Under development (unstable) (2024-07-23 r86915)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 18.1.8 (1+b1)
    Debian flang-new version 18.1.8 (1+b1)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘DescTools/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘DescTools’ version ‘0.99.55’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [8s/30s] NOTE
Maintainer: ‘Andri Signorell <andri@signorell.net>’

Suggests or Enhances not in mainstream repositories:
  RDCOMClient
Availability using Additional_repositories specification:
  RDCOMClient   yes   http://www.omegahat.net/R

Found the following (possibly) invalid URLs:
  URL: https://circos.ca/presentations/articles/vis_tables1/
    From: man/PlotCirc.Rd
    Status: Error
    Message: server certificate verification failed. CAfile: /etc/ssl/certs/ca-certificates.crt CRLfile: none
      	(Status without verification: OK)
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Package suggested but not available for checking: ‘RDCOMClient’
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘DescTools’ can be installed ... [36s/36s] OK
* used C compiler: ‘Debian clang version 18.1.8 (3)’
* used Fortran compiler: ‘Debian flang-new version 18.1.8 (3)’
* used C++ compiler: ‘Debian clang version 18.1.8 (3)’
* checking C++ specification ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking whether startup messages can be suppressed ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [47s/47s] OK
* checking Rd files ... [2s/2s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  BootCI.Rd: boot.ci
  BrierScoreCI.Rd: boot
  CstatCI.Rd: boot
  Gmean.Rd: boot.ci, boot
  Hmean.Rd: boot.ci, boot
  HuberM.Rd: boot
  MeanCI.Rd: boot.ci, boot
  MeanDiffCI.Rd: boot.ci, boot
  MedianCI.Rd: boot.ci
  QuantileCI.Rd: boot.ci
  RSqCI.Rd: boot
  Rank.Rd: forder, frankv, data.table, setkey, setorder
  Skew.Rd: boot
  TukeyBiweight.Rd: boot
  VarCI.Rd: boot.ci, boot
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... NOTE
File ‘DescTools/libs/DescTools.so’:
  Found non-API call to R: ‘SET_TYPEOF’

Compiled code should not call non-API entry points in R.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
and section ‘Moving into C API compliance’ for issues with the use of
non-API entry points.
* checking usage of KIND in Fortran files ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [71s/71s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [1s/1s] OK
  Running ‘TestsPseudoR2.R’ [0s/0s]
  Running ‘misc.R’ [1s/1s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [1s/1s] OK
* checking PDF version of manual ... [21s/21s] WARNING
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
LaTeX errors found:
! LaTeX Error: \begin{array} on input line 31996 ended by \end{equation*}.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              
! Missing $ inserted.
<inserted text> 
                $
l.31996 \left\{\begin{array}{ll} }{}
                                    \deqn{ -c &\textup{for }x \le -c\\ }{}\d...
! Missing } inserted.
<inserted text> 
                }
l.31996 \left\{\begin{array}{ll} }{}
                                    \deqn{ -c &\textup{for }x \le -c\\ }{}\d...
! Missing \cr inserted.
<inserted text> 
                \cr 
l.31996 \left\{\begin{array}{ll} }{}
                                    \deqn{ -c &\textup{for }x \le -c\\ }{}\d...
! Missing $ inserted.
<inserted text> 
                $
l.31996 \left\{\begin{array}{ll} }{}
                                    \deqn{ -c &\textup{for }x \le -c\\ }{}\d...
! Missing } inserted.
<inserted text> 
                }
l.31996 \left\{\begin{array}{ll} }{}
                                    \deqn{ -c &\textup{for }x \le -c\\ }{}\d...
! LaTeX Error: Bad math environment delimiter.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              
! Misplaced alignment tab character &.
<argument>  -c &
                \textup {for }x \le -c\\ 
l.31996 ...}\deqn{ -c &\textup{for }x \le -c\\ }{}
                                                  \deqn{ x &\textup{for } |x...
! Missing \endgroup inserted.
<inserted text> 
                \endgroup 
l.31996 ...}\deqn{ -c &\textup{for }x \le -c\\ }{}
                                                  \deqn{ x &\textup{for } |x...
! Missing \right. inserted.
<inserted text> 
                \right .
l.31996 ...}\deqn{ -c &\textup{for }x \le -c\\ }{}
                                                  \deqn{ x &\textup{for } |x...
! Misplaced alignment tab character &.
<argument>  x &
               \textup {for } |x| < c\\ 
l.31996 ...{}\deqn{ x &\textup{for } |x| < c\\ }{}
                                                  \deqn{ c &\textup{for }x \...
! Misplaced alignment tab character &.
<argument>  c &
               \textup {for }x \ge c 
l.31996 ...\ }{}\deqn{ c &\textup{for }x \ge c }{}
                                                  \deqn{ \end{array}\right. }{}
! Misplaced \crcr.
\endarray ->\crcr 
                  \egroup \egroup 
l.31996 ... \ge c }{}\deqn{ \end{array}\right. }{}
                                                  
! Extra }, or forgotten $.
\endarray ->\crcr \egroup 
                          \egroup 
l.31996 ... \ge c }{}\deqn{ \end{array}\right. }{}
                                                  
! Extra }, or forgotten $.
\endarray ->\crcr \egroup \egroup 
                                  
l.31996 ... \ge c }{}\deqn{ \end{array}\right. }{}
                                                  
! LaTeX Error: \begin{equation*} on input line 31996 ended by \end{array}.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              
! Missing $ inserted.
<inserted text> 
                $
l.31996 ... \ge c }{}\deqn{ \end{array}\right. }{}
                                                  
! Display math should end with $$.
<to be read again> 
                   \endgroup 
l.31996 ... \ge c }{}\deqn{ \end{array}\right. }{}
                                                  
! Missing $ inserted.
<inserted text> 
                $
l.31996 ... \ge c }{}\deqn{ \end{array}\right. }{}
                                                  
! Extra \right.
<argument>  \end {array}\right .
                                 
l.31996 ... \ge c }{}\deqn{ \end{array}\right. }{}
                                                  
! LaTeX Error: \begin{list} on input line 31992 ended by \end{equation*}.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              
! Missing $ inserted.
<inserted text> 
                $
l.31996 ... \ge c }{}\deqn{ \end{array}\right. }{}
                                                  
! LaTeX Error: \begin{Rdsection} on input line 31992 ended by \end{list}.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              
! LaTeX Error: \begin{Details} on input line 31992 ended by \end{Rdsection}.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              
! LaTeX Error: \begin{document} ended by \end{Details}.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              
! Extra \endgroup.
<recently read> \endgroup 
                          
l.32000 \end{Details}
                     
* checking PDF version of manual without index ... ERROR
* checking HTML version of manual ... [11s/11s] NOTE
Found the following math rendering problems:
Winsorize.Rd:27-29: Expected & or \\ or \cr or \end at end of input: ...gin{array}{ll} 
Winsorize.Rd:29-30: Expected 'EOF', got '&' in  -c &\textup{for }x ...
Winsorize.Rd:30-31: Expected 'EOF', got '&' in  x &\textup{for } |...
Winsorize.Rd:31-32: Expected 'EOF', got '&' in  c &\textup{for }x ...
Winsorize.Rd:32-33: Expected 'EOF', got '\end' in  \end{array}\right. 
* checking for non-standard things in the check directory ... NOTE
Found the following files/directories:
  ‘DescTools-manual.tex’
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR, 1 WARNING, 6 NOTEs