* using log directory ‘/srv/hornik/tmp/CRAN/DescTools.Rcheck’
* using R Under development (unstable) (2024-01-16 r85812)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 17.0.6 (3)
    Debian flang-new version 17.0.6 (3)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘DescTools/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘DescTools’ version ‘0.99.53’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [8s/12s] NOTE
Maintainer: ‘Andri Signorell <andri@signorell.net>’

Suggests or Enhances not in mainstream repositories:
  RDCOMClient
Availability using Additional_repositories specification:
  RDCOMClient   yes   http://www.omegahat.net/R

Found the following (possibly) invalid URLs:
  URL: http://circos.ca/presentations/articles/vis_tables1/
    From: man/PlotCirc.Rd
    Status: Error
    Message: server certificate verification failed. CAfile: none CRLfile: none
      	(Status without verification: OK)
  URL: https://datacatalog.worldbank.org/search/dataset/0037652
    From: man/d.countries.Rd
    Status: 404
    Message: Not Found
  URL: https://www.ine.pt/revstat/pdf/rs120203.pdf
    From: man/PoissonCI.Rd
    Status: Error
    Message: GnuTLS recv error (-110): The TLS connection was non-properly terminated.
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Package suggested but not available for checking: ‘RDCOMClient’
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘DescTools’ can be installed ... [40s/40s] OK
* used C compiler: ‘Debian clang version 17.0.6 (3)’
* used Fortran compiler: ‘Debian flang-new version 17.0.6 (3)’
* used C++ compiler: ‘Debian clang version 17.0.6 (3)’
* checking C++ specification ... OK
  Not all R platforms support C++17
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking whether startup messages can be suppressed ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [47s/47s] OK
* checking Rd files ... [2s/2s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking usage of KIND in Fortran files ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [69s/69s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [1s/1s] ERROR
  Running ‘TestsPseudoR2.R’ [0s/0s]
  Running ‘misc.R’ [1s/1s]
Running the tests in ‘tests/misc.R’ failed.
Complete output:
  > 
  > 
  > library(DescTools)
  > 
  > # stopifnot(exprs = {
  > #   all.equal(pretty10exp(10^expo, drop.1=TRUE, sub10 = c(-2, 2)),
  > #             expression(10^-3, 0.01, 0.1, 1, 10, 100, 10^3, 10^4))
  > #   
  > #   identical(pretty10exp(10^expo, drop.1=TRUE, sub10 = c(-2, 2), lab.type="latex"),
  > #             c("$10^{-3}$", "0.01", "0.1", "1", "10", "100",
  > #               "$10^{3}$", "$10^{4}$"))
  > #   ## gave exponential format for "latex" case.
  > # })
  > # 
  > 
  > set.seed(45)
  > (z <- as.numeric(names(w <- table(x <- sample(-10:20, size=50, r=TRUE)))))
   [1] -9 -8 -7 -6 -5 -4 -3 -2  0  3  4  5  6  7  8  9 10 12 13 15 16 17 18 19 20
  > 
  > stopifnot(all(
  +     identical(Mode(5), structure(NA_real_, freq = NA_integer_)) 
  +   , identical(Mode(NA), structure(NA_real_, freq = NA_integer_)) 
  +   , identical(Mode(c(NA, NA)), structure(NA_real_, freq = NA_integer_)) 
  +   , identical(Mode(c(NA, 0:5)), structure(NA_real_, freq = NA_integer_)) 
  +   , identical(Mode(c(NA, 0:5), na.rm=TRUE), structure(NA_real_, freq = NA_integer_)) 
  +   , identical(Mode(c(NA, 0:5, 5), na.rm=TRUE), structure(5, freq = 2L)) 
  +   , identical(Mode(c(0:5, 4, 5, 6)), structure(c(4, 5), freq = 2L)) 
  +   , identical(Mode(c(0:8, rep(c(1,3, 8), each=5))), structure(c(1, 3, 8), freq = 6L)) 
  +   
  +   , all.equal(Kurt(x = z, weights = w, method = 1), Kurt(x = x, method = 1))
  +   , all.equal(Kurt(x = z, weights = w, method = 2), Kurt(x = x, method = 2))
  +   , all.equal(Kurt(x = z, weights = w, method = 3), Kurt(x = x, method = 3))
  +   
  +   , all.equal(Skew(x = z, weights = w, method = 1), Skew(x = x, method = 1))
  +   , all.equal(Skew(x = z, weights = w, method = 2), Skew(x = x, method = 2))
  +   , all.equal(Skew(x = z, weights = w, method = 3), Skew(x = x, method = 3))
  +   
  +   , all.equal(CoefVar(z, weights = w, unbiased = TRUE), CoefVar(x, unbiased = TRUE))
  +   , all.equal(CoefVar(z, weights = w, unbiased = FALSE), CoefVar(x, unbiased = FALSE))
  +   
  +   , all.equal(MeanAD(x), MeanAD(z, w))
  +   , all.equal(MeanAD(x, center = Median), MeanAD(z, w, center = Median))
  +   , all.equal(MeanAD(x, center = 7), MeanAD(z, w, center = 7))
  +   
  + ))
  > 
  > 
  > 
  > # test Desc base function
  > 
  > x <- c(rnorm(n = 100, sd = 10), NA) 
  > z <- Desc(x)[[1]]
  > 
  > stopifnot(all(  
  +   identical(z$length,    length(x))
  +   , identical(z$NAs,     sum(is.na(x)))
  +   , identical(z$unique,  length(unique(na.omit(x))))
  +   , identical(z$`0s`,    sum(x==0, na.rm=TRUE))
  +   , IsZero(z$mean - mean(x, na.rm=TRUE))
  +   , identical(unname(z$quant), 
  +               unname(quantile(x, na.rm=TRUE, probs=c(0,0.05,.1,.25,.5,.75,.9,.95,1))))
  +   , identical(z$range,   diff(range(x, na.rm=TRUE)))
  +   , IsZero(z$sd - sd(x, na.rm=TRUE))
  +   , IsZero(z$vcoef - sd(x, na.rm=TRUE)/mean(x, na.rm = TRUE))
  +   , identical(z$mad,     mad(x, na.rm=TRUE))
  +   , identical(z$IQR,     IQR(x, na.rm=TRUE))
  + ))
  Error: all(identical(z$length, length(x)), identical(z$NAs, sum(is.na(x))),  .... is not TRUE
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [1s/1s] OK
* checking PDF version of manual ... [17s/17s] OK
* checking HTML version of manual ... [11s/10s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR, 2 NOTEs