downloading reverse dependencies ... downloading apollo_0.3.3.tar.gz ... ok downloading cccrm_2.2.2.tar.gz ... ok downloading ctsem_3.10.1.tar.gz ... ok downloading doBy_4.6.22.tar.gz ... ok downloading fitode_0.1.1.tar.gz ... ok downloading iccCounts_1.1.2.tar.gz ... ok downloading irtpwr_1.0.3.tar.gz ... ok downloading mirt_1.42.tar.gz ... ok downloading mosaicCalc_0.6.4.tar.gz ... ok downloading neuralnet_1.44.2.tar.gz ... ok downloading nlstac_0.2.0.tar.gz ... ok downloading OEFPIL_0.1.1.tar.gz ... ok downloading ordinalCont_2.0.2.tar.gz ... ok downloading PFIM_6.0.3.tar.gz ... ok downloading regmedint_1.0.1.tar.gz ... ok downloading resde_1.1.tar.gz ... ok downloading RGCCA_3.0.3.tar.gz ... ok downloading rsq_2.6.tar.gz ... ok downloading seeds_0.9.1.tar.gz ... ok downloading Sim.DiffProc_4.9.tar.gz ... ok downloading THREC_1.0.0.tar.gz ... ok downloading xgxr_1.1.2.tar.gz ... ok downloading docopulae_0.4.0.tar.gz ... ok downloading interp_1.1-6.tar.gz ... ok downloading nlsr_2023.8.31.tar.gz ... ok downloading stokes_1.2-1.tar.gz ... ok installing dependencies ‘bgw’, ‘calculus’, ‘cOde’, ‘deming’, ‘Deriv’, ‘mirtCAT’, ‘mize’, ‘nlraa’, ‘papaja’, ‘permutations’, ‘plink’, ‘quadform’, ‘rsbml’, ‘RSGHB’, ‘SparseGrid’, ‘spray’ also installing the dependencies ‘tinylabels’, ‘rmdfiltr’, ‘freealg’ begin installing package ‘tinylabels’ begin installing package ‘rmdfiltr’ begin installing package ‘freealg’ begin installing package ‘bgw’ begin installing package ‘RSGHB’ begin installing package ‘cOde’ begin installing package ‘mize’ begin installing package ‘plink’ begin installing package ‘Deriv’ begin installing package ‘calculus’ begin installing package ‘deming’ begin installing package ‘rsbml’ begin installing package ‘SparseGrid’ begin installing package ‘nlraa’ begin installing package ‘spray’ begin installing package ‘quadform’ * installing *source* package ‘rmdfiltr’ ... ** package ‘rmdfiltr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rmdfiltr) * installing *source* package ‘quadform’ ... ** package ‘quadform’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (quadform) * installing *source* package ‘tinylabels’ ... ** package ‘tinylabels’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tinylabels) begin installing package ‘papaja’ * installing *source* package ‘SparseGrid’ ... ** package ‘SparseGrid’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SparseGrid) * installing *source* package ‘deming’ ... ** package ‘deming’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (deming) * installing *source* package ‘cOde’ ... ** package ‘cOde’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cOde) * installing *source* package ‘Deriv’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Deriv) begin installing package ‘mirtCAT’ * installing *source* package ‘mize’ ... ** package ‘mize’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mize) * installing *source* package ‘bgw’ ... ** package ‘bgw’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpVyH0qe/R.INSTALL2bc7477099e2ea/bgw/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bgw_c_progs.c -o bgw_c_progs.o gfortran-14 -fpic -g -O2 -Wall -mtune=native -c dgletc_bgw_no_write.f90 -o dgletc_bgw_no_write.o gfortran-14 -fpic -g -O2 -Wall -mtune=native -c dglfg_bgw.f90 -o dglfg_bgw.o gfortran-14 -fpic -g -O2 -Wall -mtune=native -c dmdc.f90 -o dmdc.o gfortran-14 -fpic -g -O2 -Wall -mtune=native -c drglg_c_entry.f90 -o drglg_c_entry.o gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o bgw.so bgw_c_progs.o dgletc_bgw_no_write.o dglfg_bgw.o dmdc.o drglg_c_entry.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpVyH0qe/R.INSTALL2bc7477099e2ea/bgw/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-bgw/00new/bgw/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bgw) * installing *source* package ‘RSGHB’ ... ** package ‘RSGHB’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpgOPWJv/R.INSTALL2bc73e19c9bca9/RSGHB/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c RSGHB.c -o RSGHB.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c RSGHB_init.c -o RSGHB_init.o gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o RSGHB.so RSGHB.o RSGHB_init.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpgOPWJv/R.INSTALL2bc73e19c9bca9/RSGHB/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-RSGHB/00new/RSGHB/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RSGHB) * installing *source* package ‘papaja’ ... ** package ‘papaja’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (papaja) * installing *source* package ‘nlraa’ ... ** package ‘nlraa’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (nlraa) * installing *source* package ‘calculus’ ... ** package ‘calculus’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp4yy9qd/R.INSTALL2bc74240818b4d/calculus/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c calculus.cpp -o calculus.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o calculus.so RcppExports.o calculus.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp4yy9qd/R.INSTALL2bc74240818b4d/calculus/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-calculus/00new/calculus/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (calculus) * installing *source* package ‘freealg’ ... ** package ‘freealg’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpvNVNgZ/R.INSTALL2bc733ec9904f/freealg/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c free.cpp -o free.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o freealg.so RcppExports.o free.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpvNVNgZ/R.INSTALL2bc733ec9904f/freealg/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-freealg/00new/freealg/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (freealg) begin installing package ‘permutations’ * installing *source* package ‘spray’ ... ** package ‘spray’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’ using C++ compiler: ‘g++-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpjEtsJp/R.INSTALL2bc75139cca67e/spray/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c spray_init.c -o spray_init.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c spray_ops.cpp -o spray_ops.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o spray.so RcppExports.o spray_init.o spray_ops.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpjEtsJp/R.INSTALL2bc75139cca67e/spray/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-spray/00new/spray/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (spray) * installing *source* package ‘rsbml’ ... ** using staged installation checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for LIBSBML... yes configure: === Begin local SOSLib build === checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking for C++ compiler default output file name... a.out checking whether the C++ compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++-14 -std=gnu++17 accepts -g... yes checking for style of include used by make... GNU checking dependency style of g++-14 -std=gnu++17... gcc3 checking for gcc... gcc-14 checking whether we are using the GNU C compiler... yes checking whether gcc-14 accepts -g... yes checking for gcc-14 option to accept ISO C89... none needed checking dependency style of gcc-14... gcc3 checking whether gcc-14 accepts -fpic... yes checking how to run the C preprocessor... gcc-14 -E checking for ranlib... ranlib checking for a BSD-compatible install... /usr/bin/install -c checking whether make sets $(MAKE)... (cached) yes checking for autoconf... /usr/bin/autoconf checking for aclocal... /usr/bin/aclocal checking for make... /usr/bin/make checking for ar... /usr/bin/ar checking for swig... swig checking for perl... /usr/bin/perl checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for SBML... yes checking for correct functioning of SBML... yes checking for SUNDIALS Library headers... checking for SUNDIALS Library... checking correct functioning of SUNDIALS... no: CFLAGS=-g -O2 -pg -Wno-unknown-pragmas -Wall -ansi -std=iso9899:1990 LDFLAGS=-Wl,-O1 LIBS= -lm -lstdc++ configure: error: Can not link to SUNDIALS Library configure: === End local SOSLib build === configure: creating ./config.status config.status: creating src/Makevars ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’ using C++ compiler: ‘g++-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpz7Cwdt/R.INSTALL2bc74c3e709f06/rsbml/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/libxml2 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c StringMap.c -o StringMap.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/libxml2 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c check.c -o check.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/libxml2 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c doc.c -o doc.o doc.c: In function ‘rsbml_build_doc_cvterm’: doc.c:174:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 174 | ({ \ | ^ doc.c:203:3: note: in expansion of macro ‘SET_XML_ATTR’ 203 | SET_XML_ATTR(CVTerm, cvterm, ModelQualifierType, modelQualifierType, | ^~~~~~~~~~~~ doc.c:174:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 174 | ({ \ | ^ doc.c:205:3: note: in expansion of macro ‘SET_XML_ATTR’ 205 | SET_XML_ATTR(CVTerm, cvterm, BiologicalQualifierType, biologicalQualifierType, | ^~~~~~~~~~~~ doc.c: In function ‘rsbml_build_doc_s_base’: doc.c:174:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 174 | ({ \ | ^ doc.c:217:3: note: in expansion of macro ‘SET_XML_ATTR’ 217 | SET_XML_ATTR(SBase, s_base, MetaId, metaId, STRING); | ^~~~~~~~~~~~ doc.c:174:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 174 | ({ \ | ^ doc.c:218:3: note: in expansion of macro ‘SET_XML_ATTR’ 218 | SET_XML_ATTR(SBase, s_base, AnnotationString, annotation, STRING); | ^~~~~~~~~~~~ doc.c:174:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 174 | ({ \ | ^ doc.c:219:3: note: in expansion of macro ‘SET_XML_ATTR’ 219 | SET_XML_ATTR(SBase, s_base, NotesString, notes, STRING); | ^~~~~~~~~~~~ doc.c:174:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 174 | ({ \ | ^ doc.c:220:3: note: in expansion of macro ‘SET_XML_ATTR’ 220 | SET_XML_ATTR(SBase, s_base, SBOTerm, sboTerm, INTEGER_SCALAR); | ^~~~~~~~~~~~ doc.c:151:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 151 | ({ \ | ^ doc.c:221:3: note: in expansion of macro ‘ADD_LIST’ 221 | ADD_LIST(SBase, s_base, CVTerm, cvTerms, CVTerm, cvterm); | ^~~~~~~~ doc.c: In function ‘rsbml_build_doc_species_type’: doc.c:174:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 174 | ({ \ | ^ doc.c:237:3: note: in expansion of macro ‘SET_XML_ATTR’ 237 | SET_XML_ATTR(SpeciesType, species_type, Id, id, STRING); | ^~~~~~~~~~~~ doc.c:174:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 174 | ({ \ | ^ doc.c:238:3: note: in expansion of macro ‘SET_XML_ATTR’ 238 | SET_XML_ATTR(SpeciesType, species_type, Name, name, STRING); | ^~~~~~~~~~~~ doc.c: In function ‘rsbml_build_doc_species’: doc.c:174:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 174 | ({ \ | ^ doc.c:256:3: note: in expansion of macro ‘SET_XML_ATTR’ 256 | SET_XML_ATTR(Species, species, Id, id, STRING); | ^~~~~~~~~~~~ doc.c:174:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 174 | ({ \ | ^ doc.c:257:3: note: in expansion of macro ‘SET_XML_ATTR’ 257 | SET_XML_ATTR(Species, species, Name, name, STRING); | ^~~~~~~~~~~~ doc.c:174:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 174 | ({ \ | ^ doc.c:258:3: note: in expansion of macro ‘SET_XML_ATTR’ 258 | SET_XML_ATTR(Species, species, Compartment, compartment, STRING); | ^~~~~~~~~~~~ doc.c:174:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 174 | ({ \ | ^ doc.c:259:3: note: in expansion of macro ‘SET_XML_ATTR’ 259 | SET_XML_ATTR(Species, species, InitialConcentration, initialConcentration, REAL_SCALAR); | ^~~~~~~~~~~~ doc.c:174:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 174 | ({ \ | ^ doc.c:260:3: note: in expansion of macro ‘SET_XML_ATTR’ 260 | SET_XML_ATTR(Species, species, InitialAmount, initialAmount, REAL_SCALAR); | ^~~~~~~~~~~~ doc.c:174:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 174 | ({ \ | ^ doc.c:261:3: note: in expansion of macro ‘SET_XML_ATTR’ 261 | SET_XML_ATTR(Species, species, SubstanceUnits, substanceUnits, STRING); | ^~~~~~~~~~~~ doc.c:174:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 174 | ({ \ | ^ doc.c:262:3: note: in expansion of macro ‘SET_XML_ATTR’ 262 | SET_XML_ATTR(Species, species, SpatialSizeUnits, spatialSizeUnits, STRING); | ^~~~~~~~~~~~ doc.c:174:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 174 | ({ \ | ^ doc.c:263:3: note: in expansion of macro ‘SET_XML_ATTR’ 263 | SET_XML_ATTR(Species, species, Units, units, STRING); | ^~~~~~~~~~~~ doc.c:174:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 174 | ({ \ | ^ doc.c:264:3: note: in expansion of macro ‘SET_XML_ATTR’ 264 | SET_XML_ATTR(Species, species, HasOnlySubstanceUnits, hasOnlySubstanceUnits, LOGICAL_SCALAR); | ^~~~~~~~~~~~ doc.c:174:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 174 | ({ \ | ^ doc.c:265:3: note: in expansion of macro ‘SET_XML_ATTR’ 265 | SET_XML_ATTR(Species, species, BoundaryCondition, boundaryCondition, LOGICAL_SCALAR); | ^~~~~~~~~~~~ doc.c:174:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 174 | ({ \ | ^ doc.c:266:3: note: in expansion of macro ‘SET_XML_ATTR’ 266 | SET_XML_ATTR(Species, species, Charge, charge, INTEGER_SCALAR); | ^~~~~~~~~~~~ doc.c:174:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 174 | ({ \ | ^ doc.c:267:3: note: in expansion of macro ‘SET_XML_ATTR’ 267 | SET_XML_ATTR(Species, species, Constant, constant, LOGICAL_SCALAR); | ^~~~~~~~~~~~ doc.c: In function ‘rsbml_build_doc_function_definition’: doc.c:174:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 174 | ({ \ | ^ doc.c:285:3: note: in expansion of macro ‘SET_XML_ATTR’ 285 | SET_XML_ATTR(FunctionDefinition, function_definition, Id, id, STRING); | ^~~~~~~~~~~~ doc.c:174:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 174 | ({ \ | ^ doc.c:286:3: note: in expansion of macro ‘SET_XML_ATTR’ 286 | SET_XML_ATTR(FunctionDefinition, function_definition, Name, name, STRING); | ^~~~~~~~~~~~ doc.c:163:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 163 | ({ \ | ^ doc.c:287:3: note: in expansion of macro ‘SET_XML_ATTR_OBJ’ 287 | SET_XML_ATTR_OBJ(FunctionDefinition, function_definition, Math, math, ASTNode, ast_node); | ^~~~~~~~~~~~~~~~ doc.c: In function ‘rsbml_build_doc_unit’: doc.c:174:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 174 | ({ \ | ^ doc.c:305:3: note: in expansion of macro ‘SET_XML_ATTR’ 305 | SET_XML_ATTR(Unit, unit, Kind, kind, rsbml_build_doc_unit_kind); | ^~~~~~~~~~~~ doc.c:174:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 174 | ({ \ | ^ doc.c:306:3: note: in expansion of macro ‘SET_XML_ATTR’ 306 | SET_XML_ATTR(Unit, unit, Exponent, exponent, INTEGER_SCALAR); | ^~~~~~~~~~~~ doc.c:174:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 174 | ({ \ | ^ doc.c:307:3: note: in expansion of macro ‘SET_XML_ATTR’ 307 | SET_XML_ATTR(Unit, unit, Scale, unitScale, INTEGER_SCALAR); | ^~~~~~~~~~~~ doc.c:174:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 174 | ({ \ | ^ doc.c:308:3: note: in expansion of macro ‘SET_XML_ATTR’ 308 | SET_XML_ATTR(Unit, unit, Multiplier, multiplier, REAL_SCALAR); | ^~~~~~~~~~~~ doc.c:174:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 174 | ({ \ | ^ doc.c:309:3: note: in expansion of macro ‘SET_XML_ATTR’ 309 | SET_XML_ATTR(Unit, unit, Offset, offset, REAL_SCALAR); | ^~~~~~~~~~~~ doc.c: In function ‘rsbml_build_doc_unit_definition’: doc.c:174:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 174 | ({ \ | ^ doc.c:327:3: note: in expansion of macro ‘SET_XML_ATTR’ 327 | SET_XML_ATTR(UnitDefinition, unit_definition, Id, id, STRING); | ^~~~~~~~~~~~ doc.c:174:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 174 | ({ \ | ^ doc.c:328:3: note: in expansion of macro ‘SET_XML_ATTR’ 328 | SET_XML_ATTR(UnitDefinition, unit_definition, Name, name, STRING); | ^~~~~~~~~~~~ doc.c:151:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 151 | ({ \ | ^ doc.c:329:3: note: in expansion of macro ‘ADD_LIST’ 329 | ADD_LIST(UnitDefinition, unit_definition, Unit, units, Unit, unit); | ^~~~~~~~ doc.c: In function ‘rsbml_build_doc_compartment_type’: doc.c:174:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 174 | ({ \ | ^ doc.c:347:3: note: in expansion of macro ‘SET_XML_ATTR’ 347 | SET_XML_ATTR(CompartmentType, compartment_type, Id, id, STRING); | ^~~~~~~~~~~~ doc.c:174:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 174 | ({ \ | ^ doc.c:348:3: note: in expansion of macro ‘SET_XML_ATTR’ 348 | SET_XML_ATTR(CompartmentType, compartment_type, Name, name, STRING); | ^~~~~~~~~~~~ doc.c: In function ‘rsbml_build_doc_compartment’: doc.c:174:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 174 | ({ \ | ^ doc.c:366:3: note: in expansion of macro ‘SET_XML_ATTR’ 366 | SET_XML_ATTR(Compartment, compartment, Id, id, STRING); | ^~~~~~~~~~~~ doc.c:174:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 174 | ({ \ | ^ doc.c:367:3: note: in expansion of macro ‘SET_XML_ATTR’ 367 | SET_XML_ATTR(Compartment, compartment, Name, name, STRING); | ^~~~~~~~~~~~ doc.c:174:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 174 | ({ \ | ^ doc.c:368:3: note: in expansion of macro ‘SET_XML_ATTR’ 368 | SET_XML_ATTR(Compartment, compartment, SpatialDimensions, spatialDimensions, INTEGER_SCALAR); | ^~~~~~~~~~~~ doc.c:174:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 174 | ({ \ | ^ doc.c:369:3: note: in expansion of macro ‘SET_XML_ATTR’ 369 | SET_XML_ATTR(Compartment, compartment, Size, size, REAL_SCALAR); | ^~~~~~~~~~~~ doc.c:174:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 174 | ({ \ | ^ doc.c:370:3: note: in expansion of macro ‘SET_XML_ATTR’ 370 | SET_XML_ATTR(Compartment, compartment, Units, units, STRING); | ^~~~~~~~~~~~ doc.c:174:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 174 | ({ \ | ^ doc.c:371:3: note: in expansion of macro ‘SET_XML_ATTR’ 371 | SET_XML_ATTR(Compartment, compartment, Outside, outside, STRING); | ^~~~~~~~~~~~ doc.c:174:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 174 | ({ \ | ^ doc.c:372:3: note: in expansion of macro ‘SET_XML_ATTR’ 372 | SET_XML_ATTR(Compartment, compartment, Constant, constant, LOGICAL_SCALAR); | ^~~~~~~~~~~~ doc.c: In function ‘rsbml_build_doc_parameter’: doc.c:174:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 174 | ({ \ | ^ doc.c:390:3: note: in expansion of macro ‘SET_XML_ATTR’ 390 | SET_XML_ATTR(Parameter, parameter, Id, id, STRING); | ^~~~~~~~~~~~ doc.c:174:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 174 | ({ \ | ^ doc.c:391:3: note: in expansion of macro ‘SET_XML_ATTR’ 391 | SET_XML_ATTR(Parameter, parameter, Name, name, STRING); | ^~~~~~~~~~~~ doc.c:174:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 174 | ({ \ | ^ doc.c:392:3: note: in expansion of macro ‘SET_XML_ATTR’ 392 | SET_XML_ATTR(Parameter, parameter, Value, value, REAL_SCALAR); | ^~~~~~~~~~~~ doc.c:174:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 174 | ({ \ | ^ doc.c:393:3: note: in expansion of macro ‘SET_XML_ATTR’ 393 | SET_XML_ATTR(Parameter, parameter, Units, units, STRING); | ^~~~~~~~~~~~ doc.c:174:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 174 | ({ \ | ^ doc.c:394:3: note: in expansion of macro ‘SET_XML_ATTR’ 394 | SET_XML_ATTR(Parameter, parameter, Constant, constant, LOGICAL_SCALAR); | ^~~~~~~~~~~~ doc.c: In function ‘rsbml_build_doc_kinetic_law’: doc.c:163:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 163 | ({ \ | ^ doc.c:412:3: note: in expansion of macro ‘SET_XML_ATTR_OBJ’ 412 | SET_XML_ATTR_OBJ(KineticLaw, kinetic_law, Math, math, ASTNode, ast_node); | ^~~~~~~~~~~~~~~~ doc.c:151:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 151 | ({ \ | ^ doc.c:413:3: note: in expansion of macro ‘ADD_LIST’ 413 | ADD_LIST(KineticLaw, kinetic_law, Parameter, parameters, Parameter, parameter); | ^~~~~~~~ doc.c:174:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 174 | ({ \ | ^ doc.c:414:3: note: in expansion of macro ‘SET_XML_ATTR’ 414 | SET_XML_ATTR(KineticLaw, kinetic_law, TimeUnits, timeUnits, STRING); | ^~~~~~~~~~~~ doc.c:174:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 174 | ({ \ | ^ doc.c:415:3: note: in expansion of macro ‘SET_XML_ATTR’ 415 | SET_XML_ATTR(KineticLaw, kinetic_law, SubstanceUnits, substanceUnits, STRING); | ^~~~~~~~~~~~ doc.c: In function ‘rsbml_build_doc_simple_species_reference’: doc.c:174:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 174 | ({ \ | ^ doc.c:430:5: note: in expansion of macro ‘SET_XML_ATTR’ 430 | SET_XML_ATTR(SpeciesReference, simple_species_reference, Id, id, STRING); | ^~~~~~~~~~~~ doc.c:174:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 174 | ({ \ | ^ doc.c:431:3: note: in expansion of macro ‘SET_XML_ATTR’ 431 | SET_XML_ATTR(SpeciesReference, simple_species_reference, Species, species, STRING); | ^~~~~~~~~~~~ doc.c: In function ‘rsbml_build_doc_stoichiometry_math’: doc.c:163:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 163 | ({ \ | ^ doc.c:442:3: note: in expansion of macro ‘SET_XML_ATTR_OBJ’ 442 | SET_XML_ATTR_OBJ(StoichiometryMath, stoichiometry_math, Math, math, ASTNode, ast_node); | ^~~~~~~~~~~~~~~~ doc.c: In function ‘rsbml_build_doc_species_reference’: doc.c:174:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 174 | ({ \ | ^ doc.c:461:3: note: in expansion of macro ‘SET_XML_ATTR’ 461 | SET_XML_ATTR(SpeciesReference, species_reference, Stoichiometry, stoichiometry, REAL_SCALAR); | ^~~~~~~~~~~~ doc.c:163:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 163 | ({ \ | ^ doc.c:464:5: note: in expansion of macro ‘SET_XML_ATTR_OBJ’ 464 | SET_XML_ATTR_OBJ(SpeciesReference, species_reference, StoichiometryMath, stoichiometryMath, | ^~~~~~~~~~~~~~~~ doc.c: In function ‘rsbml_build_doc_reaction’: doc.c:174:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 174 | ({ \ | ^ doc.c:501:3: note: in expansion of macro ‘SET_XML_ATTR’ 501 | SET_XML_ATTR(Reaction, reaction, Id, id, STRING); | ^~~~~~~~~~~~ doc.c:174:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 174 | ({ \ | ^ doc.c:502:3: note: in expansion of macro ‘SET_XML_ATTR’ 502 | SET_XML_ATTR(Reaction, reaction, Name, name, STRING); | ^~~~~~~~~~~~ doc.c:151:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 151 | ({ \ | ^ doc.c:503:3: note: in expansion of macro ‘ADD_LIST’ 503 | ADD_LIST(Reaction, reaction, Reactant, reactants, SpeciesReference, species_reference); | ^~~~~~~~ doc.c:151:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 151 | ({ \ | ^ doc.c:504:3: note: in expansion of macro ‘ADD_LIST’ 504 | ADD_LIST(Reaction, reaction, Product, products, SpeciesReference, species_reference); | ^~~~~~~~ doc.c:151:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 151 | ({ \ | ^ doc.c:505:3: note: in expansion of macro ‘ADD_LIST’ 505 | ADD_LIST(Reaction, reaction, Modifier, modifiers, SpeciesReference, modifier_species_reference); | ^~~~~~~~ doc.c:163:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 163 | ({ \ | ^ doc.c:506:3: note: in expansion of macro ‘SET_XML_ATTR_OBJ’ 506 | SET_XML_ATTR_OBJ(Reaction, reaction, KineticLaw, kineticLaw, KineticLaw, kinetic_law); | ^~~~~~~~~~~~~~~~ doc.c:174:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 174 | ({ \ | ^ doc.c:507:3: note: in expansion of macro ‘SET_XML_ATTR’ 507 | SET_XML_ATTR(Reaction, reaction, Reversible, reversible, LOGICAL_SCALAR); | ^~~~~~~~~~~~ doc.c:174:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 174 | ({ \ | ^ doc.c:508:3: note: in expansion of macro ‘SET_XML_ATTR’ 508 | SET_XML_ATTR(Reaction, reaction, Fast, fast, LOGICAL_SCALAR); | ^~~~~~~~~~~~ doc.c: In function ‘rsbml_build_doc_rule’: doc.c:174:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 174 | ({ \ | ^ doc.c:530:5: note: in expansion of macro ‘SET_XML_ATTR’ 530 | SET_XML_ATTR(Rule, rule, Variable, variable, STRING); | ^~~~~~~~~~~~ doc.c:174:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 174 | ({ \ | ^ doc.c:537:5: note: in expansion of macro ‘SET_XML_ATTR’ 537 | SET_XML_ATTR(Rule, rule, Variable, variable, STRING); | ^~~~~~~~~~~~ doc.c:174:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 174 | ({ \ | ^ doc.c:542:5: note: in expansion of macro ‘SET_XML_ATTR’ 542 | SET_XML_ATTR(Rule, rule, Units, units, STRING); | ^~~~~~~~~~~~ doc.c:163:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 163 | ({ \ | ^ doc.c:547:3: note: in expansion of macro ‘SET_XML_ATTR_OBJ’ 547 | SET_XML_ATTR_OBJ(Rule, rule, Math, math, ASTNode, ast_node); | ^~~~~~~~~~~~~~~~ doc.c: In function ‘rsbml_build_doc_event_assignment’: doc.c:174:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 174 | ({ \ | ^ doc.c:565:3: note: in expansion of macro ‘SET_XML_ATTR’ 565 | SET_XML_ATTR(EventAssignment, event_assignment, Variable, variable, STRING); | ^~~~~~~~~~~~ doc.c:163:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 163 | ({ \ | ^ doc.c:566:3: note: in expansion of macro ‘SET_XML_ATTR_OBJ’ 566 | SET_XML_ATTR_OBJ(EventAssignment, event_assignment, Math, math, ASTNode, ast_node); | ^~~~~~~~~~~~~~~~ doc.c: In function ‘rsbml_build_doc_trigger’: doc.c:163:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 163 | ({ \ | ^ doc.c:584:3: note: in expansion of macro ‘SET_XML_ATTR_OBJ’ 584 | SET_XML_ATTR_OBJ(Trigger, trigger, Math, math, ASTNode, ast_node); | ^~~~~~~~~~~~~~~~ doc.c: In function ‘rsbml_build_doc_delay’: doc.c:163:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 163 | ({ \ | ^ doc.c:601:3: note: in expansion of macro ‘SET_XML_ATTR_OBJ’ 601 | SET_XML_ATTR_OBJ(Delay, delay, Math, math, ASTNode, ast_node); | ^~~~~~~~~~~~~~~~ doc.c: In function ‘rsbml_build_doc_event’: doc.c:174:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 174 | ({ \ | ^ doc.c:619:3: note: in expansion of macro ‘SET_XML_ATTR’ 619 | SET_XML_ATTR(Event, event, Id, id, STRING); | ^~~~~~~~~~~~ doc.c:174:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 174 | ({ \ | ^ doc.c:620:3: note: in expansion of macro ‘SET_XML_ATTR’ 620 | SET_XML_ATTR(Event, event, Name, name, STRING); | ^~~~~~~~~~~~ doc.c:163:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 163 | ({ \ | ^ doc.c:621:3: note: in expansion of macro ‘SET_XML_ATTR_OBJ’ 621 | SET_XML_ATTR_OBJ(Event, event, Delay, eventDelay, Delay, delay); | ^~~~~~~~~~~~~~~~ doc.c:163:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 163 | ({ \ | ^ doc.c:622:3: note: in expansion of macro ‘SET_XML_ATTR_OBJ’ 622 | SET_XML_ATTR_OBJ(Event, event, Trigger, trigger, Trigger, trigger); | ^~~~~~~~~~~~~~~~ doc.c:174:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 174 | ({ \ | ^ doc.c:623:3: note: in expansion of macro ‘SET_XML_ATTR’ 623 | SET_XML_ATTR(Event, event, TimeUnits, timeUnits, STRING); | ^~~~~~~~~~~~ doc.c:151:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 151 | ({ \ | ^ doc.c:624:3: note: in expansion of macro ‘ADD_LIST’ 624 | ADD_LIST(Event, event, EventAssignment, eventAssignments, EventAssignment, event_assignment); | ^~~~~~~~ doc.c: In function ‘rsbml_build_doc_dimensions’: doc.c:140:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 140 | ({ \ | ^ doc.c:639:3: note: in expansion of macro ‘SET_XML_ATTR_NOCHECK’ 639 | SET_XML_ATTR_NOCHECK(Dimensions, dimensions, Width, width, REAL_SCALAR); | ^~~~~~~~~~~~~~~~~~~~ doc.c:140:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 140 | ({ \ | ^ doc.c:640:3: note: in expansion of macro ‘SET_XML_ATTR_NOCHECK’ 640 | SET_XML_ATTR_NOCHECK(Dimensions, dimensions, Height, height, REAL_SCALAR); | ^~~~~~~~~~~~~~~~~~~~ doc.c:140:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 140 | ({ \ | ^ doc.c:641:3: note: in expansion of macro ‘SET_XML_ATTR_NOCHECK’ 641 | SET_XML_ATTR_NOCHECK(Dimensions, dimensions, Depth, depth, REAL_SCALAR); | ^~~~~~~~~~~~~~~~~~~~ doc.c: In function ‘rsbml_build_doc_point’: doc.c:140:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 140 | ({ \ | ^ doc.c:655:3: note: in expansion of macro ‘SET_XML_ATTR_NOCHECK’ 655 | SET_XML_ATTR_NOCHECK(Point, point, XOffset, x, REAL_SCALAR); | ^~~~~~~~~~~~~~~~~~~~ doc.c:140:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 140 | ({ \ | ^ doc.c:656:3: note: in expansion of macro ‘SET_XML_ATTR_NOCHECK’ 656 | SET_XML_ATTR_NOCHECK(Point, point, YOffset, y, REAL_SCALAR); | ^~~~~~~~~~~~~~~~~~~~ doc.c:140:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 140 | ({ \ | ^ doc.c:657:3: note: in expansion of macro ‘SET_XML_ATTR_NOCHECK’ 657 | SET_XML_ATTR_NOCHECK(Point, point, ZOffset, z, REAL_SCALAR); | ^~~~~~~~~~~~~~~~~~~~ doc.c: In function ‘rsbml_build_doc_bounding_box’: doc.c:174:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 174 | ({ \ | ^ doc.c:671:3: note: in expansion of macro ‘SET_XML_ATTR’ 671 | SET_XML_ATTR(BoundingBox, bounding_box, Id, id, STRING); | ^~~~~~~~~~~~ doc.c:129:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 129 | ({ \ | ^ doc.c:672:3: note: in expansion of macro ‘SET_XML_ATTR_OBJ_NOCHECK’ 672 | SET_XML_ATTR_OBJ_NOCHECK(BoundingBox, bounding_box, Position, position, Point, | ^~~~~~~~~~~~~~~~~~~~~~~~ doc.c:129:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 129 | ({ \ | ^ doc.c:674:3: note: in expansion of macro ‘SET_XML_ATTR_OBJ_NOCHECK’ 674 | SET_XML_ATTR_OBJ_NOCHECK(BoundingBox, bounding_box, Dimensions, dimensions, | ^~~~~~~~~~~~~~~~~~~~~~~~ doc.c: In function ‘rsbml_build_doc_base_graphical_object’: doc.c:174:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 174 | ({ \ | ^ doc.c:683:3: note: in expansion of macro ‘SET_XML_ATTR’ 683 | SET_XML_ATTR(GraphicalObject, graphical_object, Id, id, STRING); | ^~~~~~~~~~~~ doc.c:129:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 129 | ({ \ | ^ doc.c:684:3: note: in expansion of macro ‘SET_XML_ATTR_OBJ_NOCHECK’ 684 | SET_XML_ATTR_OBJ_NOCHECK(GraphicalObject, graphical_object, BoundingBox, | ^~~~~~~~~~~~~~~~~~~~~~~~ doc.c: In function ‘rsbml_build_doc_compartment_glyph’: doc.c:140:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 140 | ({ \ | ^ doc.c:709:3: note: in expansion of macro ‘SET_XML_ATTR_NOCHECK’ 709 | SET_XML_ATTR_NOCHECK(CompartmentGlyph, compartment_glyph, CompartmentId, | ^~~~~~~~~~~~~~~~~~~~ doc.c: In function ‘rsbml_build_doc_species_glyph’: doc.c:140:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 140 | ({ \ | ^ doc.c:724:3: note: in expansion of macro ‘SET_XML_ATTR_NOCHECK’ 724 | SET_XML_ATTR_NOCHECK(SpeciesGlyph, species_glyph, SpeciesId, species, STRING); | ^~~~~~~~~~~~~~~~~~~~ doc.c: In function ‘rsbml_build_doc_line_segment’: doc.c:129:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 129 | ({ \ | ^ doc.c:736:5: note: in expansion of macro ‘SET_XML_ATTR_OBJ_NOCHECK’ 736 | SET_XML_ATTR_OBJ_NOCHECK(CubicBezier, line_segment, BasePoint1, basePoint1, Point, point); | ^~~~~~~~~~~~~~~~~~~~~~~~ doc.c:129:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 129 | ({ \ | ^ doc.c:737:5: note: in expansion of macro ‘SET_XML_ATTR_OBJ_NOCHECK’ 737 | SET_XML_ATTR_OBJ_NOCHECK(CubicBezier, line_segment, BasePoint2, basePoint2, Point, point); | ^~~~~~~~~~~~~~~~~~~~~~~~ doc.c:129:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 129 | ({ \ | ^ doc.c:744:3: note: in expansion of macro ‘SET_XML_ATTR_OBJ_NOCHECK’ 744 | SET_XML_ATTR_OBJ_NOCHECK(LineSegment, line_segment, Start, start, Point, point); | ^~~~~~~~~~~~~~~~~~~~~~~~ doc.c:129:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 129 | ({ \ | ^ doc.c:745:3: note: in expansion of macro ‘SET_XML_ATTR_OBJ_NOCHECK’ 745 | SET_XML_ATTR_OBJ_NOCHECK(LineSegment, line_segment, End, end, Point, point); | ^~~~~~~~~~~~~~~~~~~~~~~~ doc.c: In function ‘rsbml_build_doc_curve’: doc.c:117:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 117 | ({ \ | ^ doc.c:759:3: note: in expansion of macro ‘ADD_LIST_NOCHECK’ 759 | ADD_LIST_NOCHECK(Curve, curve, CurveSegment, curveSegments, LineSegment, line_segment); | ^~~~~~~~~~~~~~~~ doc.c: In function ‘rsbml_build_doc_species_reference_glyph’: doc.c:140:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 140 | ({ \ | ^ doc.c:774:3: note: in expansion of macro ‘SET_XML_ATTR_NOCHECK’ 774 | SET_XML_ATTR_NOCHECK(SpeciesReferenceGlyph, species_reference_glyph, SpeciesGlyphId, speciesGlyph, STRING); | ^~~~~~~~~~~~~~~~~~~~ doc.c:140:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 140 | ({ \ | ^ doc.c:775:3: note: in expansion of macro ‘SET_XML_ATTR_NOCHECK’ 775 | SET_XML_ATTR_NOCHECK(SpeciesReferenceGlyph, species_reference_glyph, SpeciesReferenceId, speciesReference, STRING); | ^~~~~~~~~~~~~~~~~~~~ doc.c:140:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 140 | ({ \ | ^ doc.c:776:3: note: in expansion of macro ‘SET_XML_ATTR_NOCHECK’ 776 | SET_XML_ATTR_NOCHECK(SpeciesReferenceGlyph, species_reference_glyph, Role, role, STRING); | ^~~~~~~~~~~~~~~~~~~~ doc.c:129:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 129 | ({ \ | ^ doc.c:777:3: note: in expansion of macro ‘SET_XML_ATTR_OBJ_NOCHECK’ 777 | SET_XML_ATTR_OBJ_NOCHECK(SpeciesReferenceGlyph, species_reference_glyph, Curve, glyphCurve, Curve, curve); | ^~~~~~~~~~~~~~~~~~~~~~~~ doc.c: In function ‘rsbml_build_doc_reaction_glyph’: doc.c:140:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 140 | ({ \ | ^ doc.c:791:3: note: in expansion of macro ‘SET_XML_ATTR_NOCHECK’ 791 | SET_XML_ATTR_NOCHECK(ReactionGlyph, reaction_glyph, ReactionId, reaction, STRING); | ^~~~~~~~~~~~~~~~~~~~ doc.c:129:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 129 | ({ \ | ^ doc.c:792:3: note: in expansion of macro ‘SET_XML_ATTR_OBJ_NOCHECK’ 792 | SET_XML_ATTR_OBJ_NOCHECK(ReactionGlyph, reaction_glyph, Curve, glyphCurve, Curve, curve); | ^~~~~~~~~~~~~~~~~~~~~~~~ doc.c:117:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 117 | ({ \ | ^ doc.c:793:3: note: in expansion of macro ‘ADD_LIST_NOCHECK’ 793 | ADD_LIST_NOCHECK(ReactionGlyph, reaction_glyph, SpeciesReferenceGlyph, | ^~~~~~~~~~~~~~~~ doc.c: In function ‘rsbml_build_doc_text_glyph’: doc.c:140:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 140 | ({ \ | ^ doc.c:808:3: note: in expansion of macro ‘SET_XML_ATTR_NOCHECK’ 808 | SET_XML_ATTR_NOCHECK(TextGlyph, text_glyph, GraphicalObjectId, | ^~~~~~~~~~~~~~~~~~~~ doc.c:140:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 140 | ({ \ | ^ doc.c:810:3: note: in expansion of macro ‘SET_XML_ATTR_NOCHECK’ 810 | SET_XML_ATTR_NOCHECK(TextGlyph, text_glyph, Text, text, STRING); | ^~~~~~~~~~~~~~~~~~~~ doc.c:140:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 140 | ({ \ | ^ doc.c:811:3: note: in expansion of macro ‘SET_XML_ATTR_NOCHECK’ 811 | SET_XML_ATTR_NOCHECK(TextGlyph, text_glyph, OriginOfTextId, originOfText, | ^~~~~~~~~~~~~~~~~~~~ doc.c: In function ‘rsbml_build_doc_layout’: doc.c:174:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 174 | ({ \ | ^ doc.c:836:3: note: in expansion of macro ‘SET_XML_ATTR’ 836 | SET_XML_ATTR(Layout, layout, Id, id, STRING); | ^~~~~~~~~~~~ doc.c:129:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 129 | ({ \ | ^ doc.c:838:3: note: in expansion of macro ‘SET_XML_ATTR_OBJ_NOCHECK’ 838 | SET_XML_ATTR_OBJ_NOCHECK(Layout, layout, Dimensions, dimensions, Dimensions, | ^~~~~~~~~~~~~~~~~~~~~~~~ doc.c:117:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 117 | ({ \ | ^ doc.c:841:3: note: in expansion of macro ‘ADD_LIST_NOCHECK’ 841 | ADD_LIST_NOCHECK(Layout, layout, CompartmentGlyph, compartmentGlyphs, CompartmentGlyph, compartment_glyph); | ^~~~~~~~~~~~~~~~ doc.c:117:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 117 | ({ \ | ^ doc.c:842:3: note: in expansion of macro ‘ADD_LIST_NOCHECK’ 842 | ADD_LIST_NOCHECK(Layout, layout, SpeciesGlyph, speciesGlyphs, SpeciesGlyph, species_glyph); | ^~~~~~~~~~~~~~~~ doc.c:117:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 117 | ({ \ | ^ doc.c:843:3: note: in expansion of macro ‘ADD_LIST_NOCHECK’ 843 | ADD_LIST_NOCHECK(Layout, layout, ReactionGlyph, reactionGlyphs, ReactionGlyph, reaction_glyph); | ^~~~~~~~~~~~~~~~ doc.c:117:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 117 | ({ \ | ^ doc.c:844:3: note: in expansion of macro ‘ADD_LIST_NOCHECK’ 844 | ADD_LIST_NOCHECK(Layout, layout, TextGlyph, textGlyphs, TextGlyph, text_glyph); | ^~~~~~~~~~~~~~~~ doc.c:117:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 117 | ({ \ | ^ doc.c:845:3: note: in expansion of macro ‘ADD_LIST_NOCHECK’ 845 | ADD_LIST_NOCHECK(Layout, layout, AdditionalGraphicalObject, additionalGraphicalObjects, | ^~~~~~~~~~~~~~~~ doc.c: In function ‘rsbml_build_doc_initial_assignment’: doc.c:163:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 163 | ({ \ | ^ doc.c:863:3: note: in expansion of macro ‘SET_XML_ATTR_OBJ’ 863 | SET_XML_ATTR_OBJ(InitialAssignment, initial_assignment, Math, math, ASTNode, ast_node); | ^~~~~~~~~~~~~~~~ doc.c:174:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 174 | ({ \ | ^ doc.c:864:3: note: in expansion of macro ‘SET_XML_ATTR’ 864 | SET_XML_ATTR(InitialAssignment, initial_assignment, Symbol, symbol, STRING); | ^~~~~~~~~~~~ doc.c: In function ‘rsbml_build_doc_constraint’: doc.c:163:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 163 | ({ \ | ^ doc.c:881:3: note: in expansion of macro ‘SET_XML_ATTR_OBJ’ 881 | SET_XML_ATTR_OBJ(Constraint, constraint, Math, math, ASTNode, ast_node); | ^~~~~~~~~~~~~~~~ doc.c:174:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 174 | ({ \ | ^ doc.c:882:3: note: in expansion of macro ‘SET_XML_ATTR’ 882 | SET_XML_ATTR(Constraint, constraint, Message, message, rsbml_build_doc_xml_node); | ^~~~~~~~~~~~ doc.c: In function ‘rsbml_build_doc_model_creator’: doc.c:174:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 174 | ({ \ | ^ doc.c:898:3: note: in expansion of macro ‘SET_XML_ATTR’ 898 | SET_XML_ATTR(ModelCreator, model_creator, FamilyName, familyName, STRING); | ^~~~~~~~~~~~ doc.c:174:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 174 | ({ \ | ^ doc.c:899:3: note: in expansion of macro ‘SET_XML_ATTR’ 899 | SET_XML_ATTR(ModelCreator, model_creator, GivenName, givenName, STRING); | ^~~~~~~~~~~~ doc.c:174:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 174 | ({ \ | ^ doc.c:900:3: note: in expansion of macro ‘SET_XML_ATTR’ 900 | SET_XML_ATTR(ModelCreator, model_creator, Email, email, STRING); | ^~~~~~~~~~~~ doc.c:174:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 174 | ({ \ | ^ doc.c:901:3: note: in expansion of macro ‘SET_XML_ATTR’ 901 | SET_XML_ATTR(ModelCreator, model_creator, Organisation, organization, STRING); | ^~~~~~~~~~~~ doc.c: In function ‘rsbml_build_doc_model_history’: doc.c:163:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 163 | ({ \ | ^ doc.c:917:3: note: in expansion of macro ‘SET_XML_ATTR_OBJ’ 917 | SET_XML_ATTR_OBJ(ModelHistory, model_history, CreatedDate, createdDate, Date, | ^~~~~~~~~~~~~~~~ doc.c:163:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 163 | ({ \ | ^ doc.c:919:3: note: in expansion of macro ‘SET_XML_ATTR_OBJ’ 919 | SET_XML_ATTR_OBJ(ModelHistory, model_history, ModifiedDate, modifiedDate, | ^~~~~~~~~~~~~~~~ doc.c:151:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 151 | ({ \ | ^ doc.c:921:3: note: in expansion of macro ‘ADD_LIST’ 921 | ADD_LIST(ModelHistory, model_history, Creator, creators, ModelCreator, | ^~~~~~~~ doc.c: In function ‘rsbml_build_doc_model’: doc.c:174:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 174 | ({ \ | ^ doc.c:943:3: note: in expansion of macro ‘SET_XML_ATTR’ 943 | SET_XML_ATTR(Model, model, Id, id, STRING); | ^~~~~~~~~~~~ doc.c:174:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 174 | ({ \ | ^ doc.c:944:3: note: in expansion of macro ‘SET_XML_ATTR’ 944 | SET_XML_ATTR(Model, model, Name, name, STRING); | ^~~~~~~~~~~~ doc.c:151:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 151 | ({ \ | ^ doc.c:946:3: note: in expansion of macro ‘ADD_LIST’ 946 | ADD_LIST(Model, model, Species, species, Species, species); | ^~~~~~~~ doc.c:151:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 151 | ({ \ | ^ doc.c:947:3: note: in expansion of macro ‘ADD_LIST’ 947 | ADD_LIST(Model, model, FunctionDefinition, functionDefinitions, | ^~~~~~~~ doc.c:151:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 151 | ({ \ | ^ doc.c:949:3: note: in expansion of macro ‘ADD_LIST’ 949 | ADD_LIST(Model, model, UnitDefinition, unitDefinitions, UnitDefinition, | ^~~~~~~~ doc.c:151:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 151 | ({ \ | ^ doc.c:951:3: note: in expansion of macro ‘ADD_LIST’ 951 | ADD_LIST(Model, model, Compartment, compartments, Compartment, compartment); | ^~~~~~~~ doc.c:151:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 151 | ({ \ | ^ doc.c:952:3: note: in expansion of macro ‘ADD_LIST’ 952 | ADD_LIST(Model, model, Parameter, parameters, Parameter, parameter); | ^~~~~~~~ doc.c:151:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 151 | ({ \ | ^ doc.c:953:3: note: in expansion of macro ‘ADD_LIST’ 953 | ADD_LIST(Model, model, Rule, rules, Rule, rule); | ^~~~~~~~ doc.c:151:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 151 | ({ \ | ^ doc.c:954:3: note: in expansion of macro ‘ADD_LIST’ 954 | ADD_LIST(Model, model, Reaction, reactions, Reaction, reaction); | ^~~~~~~~ doc.c:151:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 151 | ({ \ | ^ doc.c:955:3: note: in expansion of macro ‘ADD_LIST’ 955 | ADD_LIST(Model, model, Event, events, Event, event); | ^~~~~~~~ doc.c:151:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 151 | ({ \ | ^ doc.c:956:3: note: in expansion of macro ‘ADD_LIST’ 956 | ADD_LIST(Model, model, SpeciesType, speciesTypes, SpeciesType, species_type); | ^~~~~~~~ doc.c:151:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 151 | ({ \ | ^ doc.c:957:3: note: in expansion of macro ‘ADD_LIST’ 957 | ADD_LIST(Model, model, CompartmentType, compartmentTypes, CompartmentType, | ^~~~~~~~ doc.c:151:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 151 | ({ \ | ^ doc.c:959:3: note: in expansion of macro ‘ADD_LIST’ 959 | ADD_LIST(Model, model, InitialAssignment, initialAssignments, | ^~~~~~~~ doc.c:151:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 151 | ({ \ | ^ doc.c:961:3: note: in expansion of macro ‘ADD_LIST’ 961 | ADD_LIST(Model, model, Constraint, constraints, Constraint, constraint); | ^~~~~~~~ doc.c:163:3: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 163 | ({ \ | ^ doc.c:963:3: note: in expansion of macro ‘SET_XML_ATTR_OBJ’ 963 | SET_XML_ATTR_OBJ(Model, model, ModelHistory, modelHistory, ModelHistory, | ^~~~~~~~~~~~~~~~ gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/libxml2 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dom.c -o dom.o In file included from rsbml.h:4, from dom.c:1: dom.c: In function ‘rsbml_build_dom_s_base’: dom.c:6:1: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 6 | ({ \ | ^ /home/hornik/tmp/R-d-gcc-14/include/Rdefines.h:152:61: note: in definition of macro ‘SET_SLOT’ 152 | #define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value) | ^~~~~ dom.c:160:42: note: in expansion of macro ‘LIST_OF’ 160 | SET_SLOT(r_s_base, install("cvTerms"), LIST_OF(s_base, SBase, cvterm, CVTerm, NULL)); | ^~~~~~~ dom.c: In function ‘rsbml_build_dom_kinetic_law’: dom.c:37:44: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 37 | #define SET_MATH(class, var, Field, field) ({ \ | ^ dom.c:233:5: note: in expansion of macro ‘SET_MATH’ 233 | SET_MATH(KineticLaw, kinetic_law, Math, math); | ^~~~~~~~ dom.c:6:1: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 6 | ({ \ | ^ /home/hornik/tmp/R-d-gcc-14/include/Rdefines.h:152:61: note: in definition of macro ‘SET_SLOT’ 152 | #define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value) | ^~~~~ dom.c:242:5: note: in expansion of macro ‘LIST_OF’ 242 | LIST_OF(kinetic_law, KineticLaw, parameter, Parameter, "id")); | ^~~~~~~ dom.c: In function ‘rsbml_build_dom_stoichiometry_math’: dom.c:37:44: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 37 | #define SET_MATH(class, var, Field, field) ({ \ | ^ dom.c:271:3: note: in expansion of macro ‘SET_MATH’ 271 | SET_MATH(StoichiometryMath, stoichiometry_math, Math, math); | ^~~~~~~~ dom.c: In function ‘rsbml_build_dom_reaction’: dom.c:6:1: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 6 | ({ \ | ^ /home/hornik/tmp/R-d-gcc-14/include/Rdefines.h:152:61: note: in definition of macro ‘SET_SLOT’ 152 | #define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value) | ^~~~~ dom.c:335:46: note: in expansion of macro ‘LIST_OF’ 335 | SET_SLOT(r_reaction, install("reactants"), LIST_OF(reaction, Reaction, species_reference, Reactant, "species")); | ^~~~~~~ dom.c:6:1: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 6 | ({ \ | ^ /home/hornik/tmp/R-d-gcc-14/include/Rdefines.h:152:61: note: in definition of macro ‘SET_SLOT’ 152 | #define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value) | ^~~~~ dom.c:336:45: note: in expansion of macro ‘LIST_OF’ 336 | SET_SLOT(r_reaction, install("products"), LIST_OF(reaction, Reaction, species_reference, Product, "species")); | ^~~~~~~ dom.c:6:1: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 6 | ({ \ | ^ /home/hornik/tmp/R-d-gcc-14/include/Rdefines.h:152:61: note: in definition of macro ‘SET_SLOT’ 152 | #define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value) | ^~~~~ dom.c:337:46: note: in expansion of macro ‘LIST_OF’ 337 | SET_SLOT(r_reaction, install("modifiers"), LIST_OF(reaction, Reaction, modifier_species_reference, Modifier, "species")); | ^~~~~~~ dom.c: In function ‘rsbml_build_dom_unit_definition’: dom.c:6:1: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 6 | ({ \ | ^ /home/hornik/tmp/R-d-gcc-14/include/Rdefines.h:152:61: note: in definition of macro ‘SET_SLOT’ 152 | #define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value) | ^~~~~ dom.c:407:49: note: in expansion of macro ‘LIST_OF’ 407 | SET_SLOT(r_unit_definition, install("units"), LIST_OF(unit_definition, UnitDefinition, unit, Unit, NULL)); | ^~~~~~~ dom.c: In function ‘rsbml_build_dom_function_definition’: dom.c:37:44: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 37 | #define SET_MATH(class, var, Field, field) ({ \ | ^ dom.c:428:5: note: in expansion of macro ‘SET_MATH’ 428 | SET_MATH(FunctionDefinition, function_definition, Math, math); | ^~~~~~~~ dom.c: In function ‘rsbml_build_dom_rule’: dom.c:37:44: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 37 | #define SET_MATH(class, var, Field, field) ({ \ | ^ dom.c:489:5: note: in expansion of macro ‘SET_MATH’ 489 | SET_MATH(Rule, rule, Math, math); | ^~~~~~~~ dom.c: In function ‘rsbml_build_dom_event_assignment’: dom.c:37:44: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 37 | #define SET_MATH(class, var, Field, field) ({ \ | ^ dom.c:509:5: note: in expansion of macro ‘SET_MATH’ 509 | SET_MATH(EventAssignment, event_assignment, Math, math); | ^~~~~~~~ dom.c: In function ‘rsbml_build_dom_delay’: dom.c:37:44: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 37 | #define SET_MATH(class, var, Field, field) ({ \ | ^ dom.c:525:3: note: in expansion of macro ‘SET_MATH’ 525 | SET_MATH(Delay, delay, Math, math); | ^~~~~~~~ dom.c: In function ‘rsbml_build_dom_trigger’: dom.c:37:44: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 37 | #define SET_MATH(class, var, Field, field) ({ \ | ^ dom.c:540:3: note: in expansion of macro ‘SET_MATH’ 540 | SET_MATH(Trigger, trigger, Math, math); | ^~~~~~~~ dom.c: In function ‘rsbml_build_dom_event’: dom.c:6:1: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 6 | ({ \ | ^ /home/hornik/tmp/R-d-gcc-14/include/Rdefines.h:152:61: note: in definition of macro ‘SET_SLOT’ 152 | #define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value) | ^~~~~ dom.c:571:5: note: in expansion of macro ‘LIST_OF’ 571 | LIST_OF(event, Event, event_assignment, EventAssignment, NULL)); | ^~~~~~~ dom.c: In function ‘rsbml_build_dom_line_segment’: dom.c:687:12: warning: comparison between ‘SBMLTypeCode_t’ and ‘enum ’ [-Wenum-compare] 687 | if (type == SBML_LAYOUT_CUBICBEZIER) { | ^~ dom.c:693:19: warning: comparison between ‘SBMLTypeCode_t’ and ‘enum ’ [-Wenum-compare] 693 | } else if (type == SBML_LAYOUT_LINESEGMENT) | ^~ dom.c: In function ‘rsbml_build_dom_curve’: dom.c:6:1: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 6 | ({ \ | ^ /home/hornik/tmp/R-d-gcc-14/include/Rdefines.h:152:61: note: in definition of macro ‘SET_SLOT’ 152 | #define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value) | ^~~~~ dom.c:719:5: note: in expansion of macro ‘LIST_OF’ 719 | LIST_OF(curve, Curve, line_segment, CurveSegment, NULL)); | ^~~~~~~ dom.c: In function ‘rsbml_build_dom_reaction_glyph’: dom.c:6:1: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 6 | ({ \ | ^ /home/hornik/tmp/R-d-gcc-14/include/Rdefines.h:152:61: note: in definition of macro ‘SET_SLOT’ 152 | #define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value) | ^~~~~ dom.c:767:5: note: in expansion of macro ‘LIST_OF’ 767 | LIST_OF(reaction_glyph, ReactionGlyph, species_reference_glyph, SpeciesReferenceGlyph, "id")); | ^~~~~~~ dom.c: In function ‘rsbml_build_dom_layout’: dom.c:6:1: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 6 | ({ \ | ^ /home/hornik/tmp/R-d-gcc-14/include/Rdefines.h:152:61: note: in definition of macro ‘SET_SLOT’ 152 | #define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value) | ^~~~~ dom.c:822:5: note: in expansion of macro ‘LIST_OF’ 822 | LIST_OF(layout, Layout, compartment_glyph, CompartmentGlyph, "id")); | ^~~~~~~ dom.c:6:1: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 6 | ({ \ | ^ /home/hornik/tmp/R-d-gcc-14/include/Rdefines.h:152:61: note: in definition of macro ‘SET_SLOT’ 152 | #define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value) | ^~~~~ dom.c:824:5: note: in expansion of macro ‘LIST_OF’ 824 | LIST_OF(layout, Layout, species_glyph, SpeciesGlyph, "id")); | ^~~~~~~ dom.c:6:1: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 6 | ({ \ | ^ /home/hornik/tmp/R-d-gcc-14/include/Rdefines.h:152:61: note: in definition of macro ‘SET_SLOT’ 152 | #define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value) | ^~~~~ dom.c:826:5: note: in expansion of macro ‘LIST_OF’ 826 | LIST_OF(layout, Layout, reaction_glyph, ReactionGlyph, "id")); | ^~~~~~~ dom.c:6:1: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 6 | ({ \ | ^ /home/hornik/tmp/R-d-gcc-14/include/Rdefines.h:152:61: note: in definition of macro ‘SET_SLOT’ 152 | #define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value) | ^~~~~ dom.c:828:5: note: in expansion of macro ‘LIST_OF’ 828 | LIST_OF(layout, Layout, text_glyph, TextGlyph, "id")); | ^~~~~~~ dom.c:6:1: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 6 | ({ \ | ^ /home/hornik/tmp/R-d-gcc-14/include/Rdefines.h:152:61: note: in definition of macro ‘SET_SLOT’ 152 | #define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value) | ^~~~~ dom.c:830:5: note: in expansion of macro ‘LIST_OF’ 830 | LIST_OF(layout, Layout, graphical_object, AdditionalGraphicalObject, "id")); | ^~~~~~~ dom.c: In function ‘rsbml_build_dom_initial_assignment’: dom.c:37:44: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 37 | #define SET_MATH(class, var, Field, field) ({ \ | ^ dom.c:882:3: note: in expansion of macro ‘SET_MATH’ 882 | SET_MATH(InitialAssignment, initial_assignment, Math, math); | ^~~~~~~~ dom.c: In function ‘rsbml_build_dom_constraint’: dom.c:37:44: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 37 | #define SET_MATH(class, var, Field, field) ({ \ | ^ dom.c:899:3: note: in expansion of macro ‘SET_MATH’ 899 | SET_MATH(Constraint, constraint, Math, math); | ^~~~~~~~ dom.c: In function ‘rsbml_build_dom_model_history’: dom.c:6:1: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 6 | ({ \ | ^ /home/hornik/tmp/R-d-gcc-14/include/Rdefines.h:152:61: note: in definition of macro ‘SET_SLOT’ 152 | #define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value) | ^~~~~ dom.c:937:5: note: in expansion of macro ‘LIST_OF’ 937 | LIST_OF(model_history, ModelHistory, model_creator, Creator, NULL)); | ^~~~~~~ dom.c: In function ‘rsbml_build_dom_model’: dom.c:6:1: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 6 | ({ \ | ^ /home/hornik/tmp/R-d-gcc-14/include/Rdefines.h:152:61: note: in definition of macro ‘SET_SLOT’ 152 | #define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value) | ^~~~~ dom.c:977:43: note: in expansion of macro ‘LIST_OF’ 977 | SET_SLOT(r_model, install("reactions"), LIST_OF(model, Model, reaction, Reaction, "id")); | ^~~~~~~ dom.c:6:1: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 6 | ({ \ | ^ /home/hornik/tmp/R-d-gcc-14/include/Rdefines.h:152:61: note: in definition of macro ‘SET_SLOT’ 152 | #define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value) | ^~~~~ dom.c:978:46: note: in expansion of macro ‘LIST_OF’ 978 | SET_SLOT(r_model, install("compartments"), LIST_OF(model, Model, compartment, Compartment, "id")); | ^~~~~~~ dom.c:6:1: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 6 | ({ \ | ^ /home/hornik/tmp/R-d-gcc-14/include/Rdefines.h:152:61: note: in definition of macro ‘SET_SLOT’ 152 | #define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value) | ^~~~~ dom.c:979:49: note: in expansion of macro ‘LIST_OF’ 979 | SET_SLOT(r_model, install("unitDefinitions"), LIST_OF(model, Model, unit_definition, UnitDefinition, "id")); | ^~~~~~~ dom.c:6:1: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 6 | ({ \ | ^ /home/hornik/tmp/R-d-gcc-14/include/Rdefines.h:152:61: note: in definition of macro ‘SET_SLOT’ 152 | #define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value) | ^~~~~ dom.c:980:53: note: in expansion of macro ‘LIST_OF’ 980 | SET_SLOT(r_model, install("functionDefinitions"), LIST_OF(model, Model, function_definition, FunctionDefinition, "id")); | ^~~~~~~ dom.c:6:1: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 6 | ({ \ | ^ /home/hornik/tmp/R-d-gcc-14/include/Rdefines.h:152:61: note: in definition of macro ‘SET_SLOT’ 152 | #define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value) | ^~~~~ dom.c:981:44: note: in expansion of macro ‘LIST_OF’ 981 | SET_SLOT(r_model, install("parameters"), LIST_OF(model, Model, parameter, Parameter, "id")); | ^~~~~~~ dom.c:6:1: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 6 | ({ \ | ^ /home/hornik/tmp/R-d-gcc-14/include/Rdefines.h:152:61: note: in definition of macro ‘SET_SLOT’ 152 | #define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value) | ^~~~~ dom.c:982:39: note: in expansion of macro ‘LIST_OF’ 982 | SET_SLOT(r_model, install("rules"), LIST_OF(model, Model, rule, Rule, NULL)); | ^~~~~~~ dom.c:6:1: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 6 | ({ \ | ^ /home/hornik/tmp/R-d-gcc-14/include/Rdefines.h:152:61: note: in definition of macro ‘SET_SLOT’ 152 | #define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value) | ^~~~~ dom.c:983:40: note: in expansion of macro ‘LIST_OF’ 983 | SET_SLOT(r_model, install("events"), LIST_OF(model, Model, event, Event, "id")); | ^~~~~~~ dom.c:6:1: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 6 | ({ \ | ^ /home/hornik/tmp/R-d-gcc-14/include/Rdefines.h:152:61: note: in definition of macro ‘SET_SLOT’ 152 | #define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value) | ^~~~~ dom.c:984:46: note: in expansion of macro ‘LIST_OF’ 984 | SET_SLOT(r_model, install("speciesTypes"), LIST_OF(model, Model, species_type, SpeciesType, "id")); | ^~~~~~~ dom.c:6:1: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 6 | ({ \ | ^ /home/hornik/tmp/R-d-gcc-14/include/Rdefines.h:152:61: note: in definition of macro ‘SET_SLOT’ 152 | #define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value) | ^~~~~ dom.c:985:50: note: in expansion of macro ‘LIST_OF’ 985 | SET_SLOT(r_model, install("compartmentTypes"), LIST_OF(model, Model, compartment_type, CompartmentType, "id")); | ^~~~~~~ dom.c:6:1: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 6 | ({ \ | ^ /home/hornik/tmp/R-d-gcc-14/include/Rdefines.h:152:61: note: in definition of macro ‘SET_SLOT’ 152 | #define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value) | ^~~~~ dom.c:986:52: note: in expansion of macro ‘LIST_OF’ 986 | SET_SLOT(r_model, install("initialAssignments"), LIST_OF(model, Model, initial_assignment, InitialAssignment, NULL)); | ^~~~~~~ dom.c:6:1: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 6 | ({ \ | ^ /home/hornik/tmp/R-d-gcc-14/include/Rdefines.h:152:61: note: in definition of macro ‘SET_SLOT’ 152 | #define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value) | ^~~~~ dom.c:987:45: note: in expansion of macro ‘LIST_OF’ 987 | SET_SLOT(r_model, install("constraints"), LIST_OF(model, Model, constraint, Constraint, "id")); | ^~~~~~~ dom.c:47:32: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 47 | #define Model_getNumLayouts(m) ({ \ | ^ /home/hornik/tmp/R-d-gcc-14/include/Rdefines.h:152:61: note: in definition of macro ‘SET_SLOT’ 152 | #define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value) | ^~~~~ dom.c:7:16: note: in expansion of macro ‘Model_getNumLayouts’ 7 | int i, len = class ## _getNum ## field ## s(var); \ | ^~~~~ dom.c:989:41: note: in expansion of macro ‘LIST_OF’ 989 | SET_SLOT(r_model, install("layouts"), LIST_OF(model, Model, layout, Layout, "id")); | ^~~~~~~ dom.c:52:31: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 52 | #define Model_getLayout(m, i) ({ \ | ^ /home/hornik/tmp/R-d-gcc-14/include/Rdefines.h:152:61: note: in definition of macro ‘SET_SLOT’ 152 | #define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value) | ^~~~~ dom.c:13:47: note: in expansion of macro ‘Model_getLayout’ 13 | SEXP r_element = rsbml_build_dom_ ## func(class ## _get ## field(var, i)); \ | ^~~~~ dom.c:989:41: note: in expansion of macro ‘LIST_OF’ 989 | SET_SLOT(r_model, install("layouts"), LIST_OF(model, Model, layout, Layout, "id")); | ^~~~~~~ dom.c:6:1: warning: ISO C forbids braced-groups within expressions [-Wpedantic] 6 | ({ \ | ^ /home/hornik/tmp/R-d-gcc-14/include/Rdefines.h:152:61: note: in definition of macro ‘SET_SLOT’ 152 | #define SET_SLOT(x, what, value) R_do_slot_assign(x, what, value) | ^~~~~ dom.c:989:41: note: in expansion of macro ‘LIST_OF’ 989 | SET_SLOT(r_model, install("layouts"), LIST_OF(model, Model, layout, Layout, "id")); | ^~~~~~~ gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/libxml2 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c graph.c -o graph.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/libxml2 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/libxml2 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c io.c -o io.o io.c:45:1: warning: function declaration isn’t a prototype [-Wstrict-prototypes] 45 | rsbml_create_sbml_writer() | ^~~~~~~~~~~~~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/libxml2 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c layoutWrappers.cpp -o layoutWrappers.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/libxml2 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mathml.c -o mathml.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/include/libxml2 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c simulate.c -o simulate.o simulate.c:109: warning: ISO C forbids an empty translation unit [-Wpedantic] g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o rsbml.so StringMap.o check.o doc.o dom.o graph.o init.o io.o layoutWrappers.o mathml.o simulate.o -lsbml -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpz7Cwdt/R.INSTALL2bc74c3e709f06/rsbml/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-rsbml/00new/rsbml/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rsbml) * installing *source* package ‘plink’ ... ** package ‘plink’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (plink) * installing *source* package ‘permutations’ ... ** package ‘permutations’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (permutations) * installing *source* package ‘mirtCAT’ ... ** package ‘mirtCAT’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpdBjWOE/R.INSTALL2bcc612b8cb185/mirtCAT/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c CAT_functions.cpp -o CAT_functions.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c item_functions.cpp -o item_functions.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o mirtCAT.so CAT_functions.o item_functions.o -llapack -L/home/hornik/tmp/R-d-gcc-14/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpdBjWOE/R.INSTALL2bcc612b8cb185/mirtCAT/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-mirtCAT/00new/mirtCAT/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mirtCAT) checking Deriv_4.1.6.tar.gz ... checking apollo_0.3.3.tar.gz ... checking cccrm_2.2.2.tar.gz ... checking ctsem_3.10.1.tar.gz ... checking doBy_4.6.22.tar.gz ... checking fitode_0.1.1.tar.gz ... checking iccCounts_1.1.2.tar.gz ... checking irtpwr_1.0.3.tar.gz ... checking mirt_1.42.tar.gz ... checking mosaicCalc_0.6.4.tar.gz ... checking neuralnet_1.44.2.tar.gz ... checking nlstac_0.2.0.tar.gz ... checking OEFPIL_0.1.1.tar.gz ... checking ordinalCont_2.0.2.tar.gz ... checking PFIM_6.0.3.tar.gz ... checking regmedint_1.0.1.tar.gz ... checking resde_1.1.tar.gz ... checking RGCCA_3.0.3.tar.gz ... checking rsq_2.6.tar.gz ... checking seeds_0.9.1.tar.gz ... checking Sim.DiffProc_4.9.tar.gz ... checking THREC_1.0.0.tar.gz ... checking xgxr_1.1.2.tar.gz ... checking docopulae_0.4.0.tar.gz ... checking interp_1.1-6.tar.gz ... checking nlsr_2023.8.31.tar.gz ... checking stokes_1.2-1.tar.gz ... Depends: Package: Deriv Imports: methods Timings: user system elapsed Deriv 37.606 3.579 42.46 Results: Check status summary: NOTE OK Source packages 0 1 Reverse depends 8 18 Check results summary: Deriv ... OK rdepends_apollo ... NOTE * checking R code for possible problems ... [56s/56s] NOTE rdepends_cccrm ... OK rdepends_ctsem ... OK rdepends_doBy ... OK rdepends_docopulae ... NOTE * checking LazyData ... NOTE rdepends_fitode ... NOTE * checking Rd cross-references ... NOTE rdepends_iccCounts ... OK rdepends_interp ... OK rdepends_irtpwr ... OK rdepends_mirt ... OK rdepends_mosaicCalc ... OK rdepends_neuralnet ... OK rdepends_nlsr ... OK rdepends_nlstac ... OK rdepends_OEFPIL ... NOTE * checking Rd cross-references ... NOTE rdepends_ordinalCont ... OK rdepends_PFIM ... OK rdepends_regmedint ... OK rdepends_resde ... OK rdepends_RGCCA ... OK rdepends_rsq ... NOTE * checking Rd cross-references ... NOTE rdepends_seeds ... NOTE * checking Rd cross-references ... NOTE rdepends_Sim.DiffProc ... NOTE * checking compiled code ... NOTE rdepends_stokes ... NOTE * checking Rd cross-references ... NOTE rdepends_THREC ... OK rdepends_xgxr ... OK