context("helpers") test_that("`getUrlBase`", { PRODUCTION <- "https://dataspace.cavd.org" STAGING <- "https://dataspace-staging.cavd.org" expect_equal(DataSpaceR:::getUrlBase(FALSE), PRODUCTION) expect_equal(DataSpaceR:::getUrlBase(TRUE), STAGING) assign("labkey.url.base", PRODUCTION, envir = .GlobalEnv) expect_equal(DataSpaceR:::getUrlBase(FALSE), PRODUCTION) expect_equal(DataSpaceR:::getUrlBase(TRUE), PRODUCTION) suppressWarnings(rm("labkey.url.base", envir = .GlobalEnv)) }) test_that("`getUserEmail`", { url <- "https://dataspace.cavd.org" email <- "jkim2345@scharp.org" expect_equal(DataSpaceR:::getUserEmail(url, email), email) expect_match(DataSpaceR:::getUserEmail(url, NULL), "\\w+@\\w+") assign("labkey.user.email", email, envir = .GlobalEnv) expect_equal(DataSpaceR:::getUserEmail(url, email), email) suppressWarnings(rm("labkey.user.email", envir = .GlobalEnv)) }) test_that("`getUrlPath`", { expect_equal(DataSpaceR:::getUrlPath(""), "/CAVD") expect_equal(DataSpaceR:::getUrlPath("cvd123"), "/CAVD/cvd123") expect_error(DataSpaceR:::getUrlPath(NULL), "'study' cannot be NULL.") assign("labkey.url.path", "/CAVD", envir = .GlobalEnv) expect_equal(DataSpaceR:::getUrlPath(NULL), "/CAVD") expect_equal(DataSpaceR:::getUrlPath("cvd123"), "/CAVD/cvd123") suppressWarnings(rm("labkey.url.path", envir = .GlobalEnv)) }) test_that("`checkStudy`", { url <- "https://dataspace.cavd.org" expect_null(DataSpaceR:::checkStudy("cvd232", url)) expect_error(DataSpaceR:::checkStudy("hello", url)) expect_error(DataSpaceR:::checkStudy("hello", url, verbose = TRUE)) }) test_that("`fixStudy`", { study <- "cvd232" url <- "https://dataspace.cavd.org" path <- "/CAVD/cvd232" expect_equal(DataSpaceR:::fixStudy(study, url, path), study) expect_equal(DataSpaceR:::fixStudy(NULL, url, path), study) }) test_that("`getNetrc`", { expect_match(DataSpaceR:::getNetrc(NULL, NULL), "netrc") expect_is(DataSpaceR:::getNetrc("user", "password"), "character") assign("labkey.netrc.file", "/there/.netrc", envir = .GlobalEnv) expect_equal(DataSpaceR:::getNetrc(NULL, NULL), "/there/.netrc") suppressWarnings(rm("labkey.netrc.file", envir = .GlobalEnv)) })