testKMD <- function(n.iter) { if(requireNamespace("KMD", quietly = TRUE) & requireNamespace("rmvnorm", quietly = TRUE)) { for(i in 1:n.iter) { set.seed(i) X1 <- mvtnorm::rmvnorm(100, sigma = matrix(0.2, 10, 10) + diag(0.8, 10, 10), mean = runif(10, -2, 2)) X2 <- mvtnorm::rmvnorm(100, mean = runif(10, -2, 2), sigma = matrix(0.5, 10, 10) + diag(0.5, 10, 10)) X3 <- mvtnorm::rmvnorm(100, sigma = matrix(0.2, 10, 10) + diag(0.8, 10, 10), mean = runif(10, -2, 2)) X4 <- mvtnorm::rmvnorm(100, mean = runif(10, -2, 2), sigma = matrix(0.5, 10, 10) + diag(0.5, 10, 10)) X5 <- mvtnorm::rmvnorm(100, sigma = matrix(0.2, 10, 10) + diag(0.8, 10, 10), mean = runif(10, -2, 2)) X6 <- mvtnorm::rmvnorm(100, mean = runif(10, -2, 2), sigma = matrix(0.5, 10, 10) + diag(0.5, 10, 10)) set.seed(i) res.KMD_test.perm <- KMD::KMD_test(rbind(X1, X2, X3, X4, X5, X6), c(rep(1, nrow(X1)), rep(2, nrow(X2)), rep(3, nrow(X3)), rep(4, nrow(X4)), rep(5, nrow(X5)), rep(6, nrow(X6))), Permutation = TRUE, B = 10) set.seed(i) res.KMD_test <- KMD::KMD_test(rbind(X1, X2, X3, X4, X5, X6), c(rep(1, nrow(X1)), rep(2, nrow(X2)), rep(3, nrow(X3)), rep(4, nrow(X4)), rep(5, nrow(X5)), rep(6, nrow(X6))), Permutation = FALSE) set.seed(i) res.KMD.test.stat <- KMD::KMD(rbind(X1, X2, X3, X4, X5, X6), c(rep(1, nrow(X1)), rep(2, nrow(X2)), rep(3, nrow(X3)), rep(4, nrow(X4)), rep(5, nrow(X5)), rep(6, nrow(X6)))) res.KMD <- DataSimilarity::KMD(X1, X2, as.data.frame(X3), X4, X5, X6, n.perm = 0, k = 1, seed = i) res.KMD.perm <- DataSimilarity::KMD(X1, X2, as.data.frame(X3), X4, X5, X6, n.perm = 10, k = 1, seed = i) testthat::test_that("output type", { # check length and names of output testthat::expect_length(res.KMD, 9) testthat::expect_named(res.KMD, c("statistic", "p.value", "estimate", "alternative", "method", "data.name", "graph", "k", "kernel")) testthat::expect_length(res.KMD.perm, 9) testthat::expect_named(res.KMD.perm, c("statistic", "p.value", "estimate", "alternative", "method", "data.name", "graph", "k", "kernel")) # check p values in [0,1] testthat::expect_lte(res.KMD$p.value, 1) testthat::expect_gte(res.KMD$p.value, 0) testthat::expect_lte(res.KMD.perm$p.value, 1) testthat::expect_gte(res.KMD.perm$p.value, 0) # statistic is not NA testthat::expect_false(is.na(res.KMD$statistic)) testthat::expect_false(is.na(res.KMD.perm$statistic)) # output should be numeric testthat::expect_s3_class(res.KMD, "htest") testthat::expect_s3_class(res.KMD.perm, "htest") }) testthat::test_that("output values", { # check test statistic values testthat::expect_equal(res.KMD$estimate, res.KMD.test.stat, check.attributes = FALSE) testthat::expect_equal(res.KMD.perm$statistic, res.KMD.test.stat, check.attributes = FALSE) # check test p values testthat::expect_equal(res.KMD$p.value, res.KMD_test[, "p value"], check.attributes = FALSE) testthat::expect_equal(res.KMD.perm$p.value, res.KMD_test.perm, check.attributes = FALSE) testthat::expect_equal(res.KMD$estimate, res.KMD.perm$statistic, check.attributes = FALSE) }) res.KMD.1 <- DataSimilarity::KMD(X1[, 1, drop = FALSE], X2[, 1, drop = FALSE], as.data.frame(X3)[, 1, drop = FALSE], X4[, 1, drop = FALSE], X5[, 1, drop = FALSE], X6[, 1, drop = FALSE], n.perm = 0, k = 1, seed = i) res.KMD.perm.1 <- DataSimilarity::KMD(X1[, 1, drop = FALSE], X2[, 1, drop = FALSE], as.data.frame(X3)[, 1, drop = FALSE], X4[, 1, drop = FALSE], X5[, 1, drop = FALSE], X6[, 1, drop = FALSE], n.perm = 10, k = 1, seed = i) testthat::test_that("output type", { # check length and names of output testthat::expect_length(res.KMD.1, 9) testthat::expect_named(res.KMD.1, c("statistic", "p.value", "estimate", "alternative", "method", "data.name", "graph", "k", "kernel")) testthat::expect_length(res.KMD.perm.1, 9) testthat::expect_named(res.KMD.perm.1, c("statistic", "p.value", "estimate", "alternative", "method", "data.name", "graph", "k", "kernel")) # check p values in [0,1] testthat::expect_lte(res.KMD.1$p.value, 1) testthat::expect_gte(res.KMD.1$p.value, 0) testthat::expect_lte(res.KMD.perm.1$p.value, 1) testthat::expect_gte(res.KMD.perm.1$p.value, 0) # statistic is not NA testthat::expect_false(is.na(res.KMD.1$statistic)) testthat::expect_false(is.na(res.KMD.perm.1$statistic)) # output should be numeric testthat::expect_s3_class(res.KMD.1, "htest") testthat::expect_s3_class(res.KMD.perm.1, "htest") }) } } } set.seed(0305) testKMD(10)