* using log directory ‘/srv/hornik/tmp/CRAN/DTwrappers2.Rcheck’
* using R Under development (unstable) (2024-03-12 r86109)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 17.0.6 (5)
    Debian flang-new version 17.0.6 (5)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘DTwrappers2/DESCRIPTION’ ... OK
* this is package ‘DTwrappers2’ version ‘0.0.2’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [3s/3s] NOTE
Maintainer: ‘Srivastav Budugutta <sb4788@columbia.edu>’

New submission

Possibly misspelled words in DESCRIPTION:
  summarizations (10:260)
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘DTwrappers2’ can be installed ... [1s/1s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s/0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
* checking loading without being on the library search path ... [0s/0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [2s/2s] OK
* checking Rd files ... [0s/0s] NOTE
checkRd: (-1) dt.summarize.Rd:26: Lost braces
    26 | \item{the.functions}{a character vector or list specifying the name of the function to apply to the variables.  This may either be specified by the name of the function as a character (e.g. "mean") or by defining a function; e.g. function(x){return(mean(x = x))} that can be computed on each column of data as specified in the.variables.}
       |                                                                                                                                                                                                                                                  ^
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [1s/1s] ERROR
  Running ‘testthat.R’ [1s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(DTwrappers2)
  > 
  > test_check("DTwrappers2")
  [ FAIL 16 | WARN 0 | SKIP 0 | PASS 0 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-dt.character.coercion.culprits.R:22:7'): Basic functionality: returns a data.table with expected columns ──
  Error in `dt.calculate(dt.name = dt.name, the.variables = the.variables, 
      the.functions = "character.coercion.culprits", the.filter = the.filter, 
      grouping.variables = grouping.variables, grouping.type = grouping.type, 
      add.function.name = add.function.name, other.params = other.params, 
      ...)`: Error:  the.functions must be specified with functions that are loaded.  Make sure to call library() for the required packages.
  Backtrace:
      ▆
   1. └─DTwrappers2::dt.character.coercion.culprits(...) at test-dt.character.coercion.culprits.R:22:7
   2.   └─DTwrappers::dt.calculate(...)
  ── Error ('test-dt.character.coercion.culprits.R:30:7'): Threshold handling: adjusts output based on the threshold ──
  Error in `dt.calculate(dt.name = dt.name, the.variables = the.variables, 
      the.functions = "character.coercion.culprits", the.filter = the.filter, 
      grouping.variables = grouping.variables, grouping.type = grouping.type, 
      add.function.name = add.function.name, other.params = other.params, 
      ...)`: Error:  the.functions must be specified with functions that are loaded.  Make sure to call library() for the required packages.
  Backtrace:
      ▆
   1. └─DTwrappers2::dt.character.coercion.culprits(...) at test-dt.character.coercion.culprits.R:30:7
   2.   └─DTwrappers::dt.calculate(...)
  ── Error ('test-dt.character.coercion.culprits.R:38:7'): Variable selection: only processes specified variables ──
  Error in `dt.calculate(dt.name = dt.name, the.variables = the.variables, 
      the.functions = "character.coercion.culprits", the.filter = the.filter, 
      grouping.variables = grouping.variables, grouping.type = grouping.type, 
      add.function.name = add.function.name, other.params = other.params, 
      ...)`: Error:  the.functions must be specified with functions that are loaded.  Make sure to call library() for the required packages.
  Backtrace:
      ▆
   1. └─DTwrappers2::dt.character.coercion.culprits(...) at test-dt.character.coercion.culprits.R:38:7
   2.   └─DTwrappers::dt.calculate(...)
  ── Error ('test-dt.character.coercion.culprits.R:46:7'): Grouping functionality: correctly groups the results ──
  Error in `dt.calculate(dt.name = dt.name, the.variables = the.variables, 
      the.functions = "character.coercion.culprits", the.filter = the.filter, 
      grouping.variables = grouping.variables, grouping.type = grouping.type, 
      add.function.name = add.function.name, other.params = other.params, 
      ...)`: Error:  the.functions must be specified with functions that are loaded.  Make sure to call library() for the required packages.
  Backtrace:
      ▆
   1. └─DTwrappers2::dt.character.coercion.culprits(...) at test-dt.character.coercion.culprits.R:46:7
   2.   └─DTwrappers::dt.calculate(...)
  ── Error ('test-dt.character.coercion.culprits.R:55:7'): Return type handling: handles different return types correctly ──
  Error in `dt.calculate(dt.name = dt.name, the.variables = the.variables, 
      the.functions = "character.coercion.culprits", the.filter = the.filter, 
      grouping.variables = grouping.variables, grouping.type = grouping.type, 
      add.function.name = add.function.name, other.params = other.params, 
      ...)`: Error:  the.functions must be specified with functions that are loaded.  Make sure to call library() for the required packages.
  Backtrace:
      ▆
   1. └─DTwrappers2::dt.character.coercion.culprits(...) at test-dt.character.coercion.culprits.R:55:7
   2.   └─DTwrappers::dt.calculate(...)
  ── Error ('test-dt.max.numerics.R:12:5'): dt.max.numerics functionality: computes maximum values correctly for each group ──
  Error in `dt.calculate(dt.name = dt.name, the.variables = the.variables, 
      the.functions = "max.numerics", the.filter = the.filter, 
      grouping.variables = grouping.variables, sortby.group = sortby.group, 
      other.params = other.params, table.format = table.format, 
      add.function.name = add.function.name, return.as = return.as, 
      envir = envir, ...)`: Error:  the.functions must be specified with functions that are loaded.  Make sure to call library() for the required packages.
  Backtrace:
      ▆
   1. └─DTwrappers2::dt.max.numerics(...) at test-dt.max.numerics.R:12:5
   2.   └─DTwrappers::dt.calculate(...)
  ── Error ('test-dt.max.numerics.R:26:5'): dt.max.numerics functionality: handles non-numeric columns according to non.numeric.value parameter ──
  Error in `dt.calculate(dt.name = dt.name, the.variables = the.variables, 
      the.functions = "max.numerics", the.filter = the.filter, 
      grouping.variables = grouping.variables, sortby.group = sortby.group, 
      other.params = other.params, table.format = table.format, 
      add.function.name = add.function.name, return.as = return.as, 
      envir = envir, ...)`: Error:  the.functions must be specified with functions that are loaded.  Make sure to call library() for the required packages.
  Backtrace:
      ▆
   1. └─DTwrappers2::dt.max.numerics(...) at test-dt.max.numerics.R:26:5
   2.   └─DTwrappers::dt.calculate(...)
  ── Error ('test-dt.mean.measured.R:14:5'): dt.mean.measured functionality: calculates the proportion of measured values correctly ──
  Error in `dt.calculate(dt.name = dt.name, the.variables = the.variables, 
      the.functions = "mean.measured", the.filter = the.filter, 
      grouping.variables = grouping.variables, sortby.group = sortby.group, 
      table.format = table.format, add.function.name = add.function.name, 
      return.as = return.as, envir = envir, ...)`: Error:  the.functions must be specified with functions that are loaded.  Make sure to call library() for the required packages.
  Backtrace:
      ▆
   1. └─DTwrappers2::dt.mean.measured(...) at test-dt.mean.measured.R:14:5
   2.   └─DTwrappers::dt.calculate(...)
  ── Error ('test-dt.mean.measured.R:27:5'): dt.mean.measured functionality: applies filters correctly ──
  Error in `dt.calculate(dt.name = dt.name, the.variables = the.variables, 
      the.functions = "mean.measured", the.filter = the.filter, 
      grouping.variables = grouping.variables, sortby.group = sortby.group, 
      table.format = table.format, add.function.name = add.function.name, 
      return.as = return.as, envir = envir, ...)`: Error:  the.functions must be specified with functions that are loaded.  Make sure to call library() for the required packages.
  Backtrace:
      ▆
   1. └─DTwrappers2::dt.mean.measured(...) at test-dt.mean.measured.R:27:5
   2.   └─DTwrappers::dt.calculate(...)
  ── Error ('test-dt.mean.missing.R:14:5'): dt.mean.missing functionality: calculates the proportion of missing values correctly ──
  Error in `dt.calculate(dt.name = dt.name, the.variables = the.variables, 
      the.functions = "mean.missing", the.filter = the.filter, 
      grouping.variables = grouping.variables, sortby.group = sortby.group, 
      table.format = table.format, add.function.name = add.function.name, 
      return.as = return.as, envir = envir, ...)`: Error:  the.functions must be specified with functions that are loaded.  Make sure to call library() for the required packages.
  Backtrace:
      ▆
   1. └─DTwrappers2::dt.mean.missing(...) at test-dt.mean.missing.R:14:5
   2.   └─DTwrappers::dt.calculate(...)
  ── Error ('test-dt.mean.missing.R:25:5'): dt.mean.missing functionality: applies filters and grouping correctly ──
  Error in `dt.calculate(dt.name = dt.name, the.variables = the.variables, 
      the.functions = "mean.missing", the.filter = the.filter, 
      grouping.variables = grouping.variables, sortby.group = sortby.group, 
      table.format = table.format, add.function.name = add.function.name, 
      return.as = return.as, envir = envir, ...)`: Error:  the.functions must be specified with functions that are loaded.  Make sure to call library() for the required packages.
  Backtrace:
      ▆
   1. └─DTwrappers2::dt.mean.missing(...) at test-dt.mean.missing.R:25:5
   2.   └─DTwrappers::dt.calculate(...)
  ── Error ('test-dt.mean.numerics.R:12:5'): dt.mean.numerics functionality: computes mean values correctly with filter and grouping ──
  Error in `dt.calculate(dt.name = dt.name, the.variables = the.variables, 
      the.functions = "mean.numerics", the.filter = the.filter, 
      grouping.variables = grouping.variables, sortby.group = sortby.group, 
      other.params = other.params, table.format = table.format, 
      add.function.name = add.function.name, return.as = return.as, 
      envir = envir, ...)`: Error:  the.functions must be specified with functions that are loaded.  Make sure to call library() for the required packages.
  Backtrace:
      ▆
   1. └─DTwrappers2::dt.mean.numerics(...) at test-dt.mean.numerics.R:12:5
   2.   └─DTwrappers::dt.calculate(...)
  ── Error ('test-dt.median.numerics.R:12:5'): dt.median.numerics functionality: computes median values correctly with filter and grouping ──
  Error in `dt.calculate(dt.name = dt.name, the.variables = the.variables, 
      the.functions = "median.numerics", the.filter = the.filter, 
      grouping.variables = grouping.variables, sortby.group = sortby.group, 
      other.params = other.params, table.format = table.format, 
      add.function.name = add.function.name, return.as = return.as, 
      envir = envir, ...)`: Error:  the.functions must be specified with functions that are loaded.  Make sure to call library() for the required packages.
  Backtrace:
      ▆
   1. └─DTwrappers2::dt.median.numerics(...) at test-dt.median.numerics.R:12:5
   2.   └─DTwrappers::dt.calculate(...)
  ── Error ('test-dt.min.numerics.R:8:5'): dt.min.numerics functionality: computes minimum values correctly with grouping by species ──
  Error in `dt.calculate(dt.name = dt.name, the.variables = the.variables, 
      the.functions = "min.numerics", the.filter = the.filter, 
      grouping.variables = grouping.variables, sortby.group = sortby.group, 
      other.params = other.params, table.format = table.format, 
      add.function.name = add.function.name, return.as = return.as, 
      envir = envir, ...)`: Error:  the.functions must be specified with functions that are loaded.  Make sure to call library() for the required packages.
  Backtrace:
      ▆
   1. └─DTwrappers2::dt.min.numerics(...) at test-dt.min.numerics.R:8:5
   2.   └─DTwrappers::dt.calculate(...)
  ── Error ('test-dt.remove.erroneous.characters.R:12:5'): Functionality of dt.remove.erroneous.characters: executes without errors and returns a data.table ──
  Error in `dt.calculate(dt.name = dt.name, the.functions = "remove.erroneous.characters", 
      the.variables = the.variables, the.filter = the.filter, grouping.variables = NULL, 
      sortby.group = TRUE, other.params = other.params, table.format = "wide", 
      add.function.name = FALSE, individual.variables = TRUE, output.as.table = TRUE, 
      return.as = return.as, envir = envir)`: Error:  the.functions must be specified with functions that are loaded.  Make sure to call library() for the required packages.
  Backtrace:
      ▆
   1. └─DTwrappers2::dt.remove.erroneous.characters(...) at test-dt.remove.erroneous.characters.R:12:5
   2.   └─DTwrappers::dt.calculate(...)
  ── Error ('test-dt.round.numerics.R:18:5'): Functionality of dt.round.numerics: correctly rounds the numeric values to specified digits ──
  Error in `dt.calculate(dt.name = dt.name, the.variables = the.variables, 
      the.functions = "round.numerics", the.filter = the.filter, 
      grouping.variables = grouping.variables, sortby.group = sortby.group, 
      other.params = other.params, table.format = "wide", add.function.name = add.function.name, 
      return.as = return.as, envir = envir, ...)`: Error:  the.functions must be specified with functions that are loaded.  Make sure to call library() for the required packages.
  Backtrace:
      ▆
   1. └─DTwrappers2::dt.round.numerics(dt.name = "grouped.means", digits = 2) at test-dt.round.numerics.R:18:5
   2.   └─DTwrappers::dt.calculate(...)
  
  [ FAIL 16 | WARN 0 | SKIP 0 | PASS 0 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... NOTE
'library' or 'require' call not declared from: ‘markdown’
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [0s/0s] OK
* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [0s/0s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR, 3 NOTEs