* using log directory ‘/srv/hornik/tmp/CRAN_pretest/DTEBOP2.Rcheck’
* using R Under development (unstable) (2025-04-21 r88169)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 19.1.7 (3)
    Debian flang-new version 19.1.7 (3)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘DTEBOP2/DESCRIPTION’ ... OK
* this is package ‘DTEBOP2’ version ‘1.0.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [3s/3s] NOTE
Maintainer: ‘Zhongheng Cai <zhonghengcai123@gmail.com>’

New submission
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘DTEBOP2’ can be installed ... [1s/1s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s/0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
* checking loading without being on the library search path ... [0s/0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [3s/3s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [9s/9s] NOTE
Examples with CPU (user + system) or elapsed time > 5s
                      user system elapsed
getoc_2arm_piecewise 8.462      0   8.464
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [7s/7s] ERROR
Error(s) in re-building vignettes:
  ...
--- re-building ‘DTEBOP2.Rmd’ using rmarkdown
** Processing: /srv/hornik/tmp/CRAN_pretest/DTEBOP2.Rcheck/vign_test/DTEBOP2/vignettes/DTEBOP2_files/figure-html/setup-1.png
3000x2100 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 147860 bytes
Input file size = 148154 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 128025
  zc = 9  zm = 8  zs = 1  f = 0
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 128025

Output IDAT size = 128025 bytes (19835 bytes decrease)
Output file size = 128103 bytes (20051 bytes = 13.53% decrease)

** Processing: /srv/hornik/tmp/CRAN_pretest/DTEBOP2.Rcheck/vign_test/DTEBOP2/vignettes/DTEBOP2_files/figure-html/unnamed-chunk-4-1.png
3000x2100 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 53372 bytes
Input file size = 54302 bytes

Trying:
  zc = 9  zm = 8  zs = 0  f = 0		IDAT size = 45884
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 45112
  zc = 1  zm = 8  zs = 2  f = 0
  zc = 9  zm = 8  zs = 3  f = 0
  zc = 9  zm = 8  zs = 0  f = 5
  zc = 9  zm = 8  zs = 1  f = 5
  zc = 1  zm = 8  zs = 2  f = 5
  zc = 9  zm = 8  zs = 3  f = 5
                               
Selecting parameters:
  zc = 9  zm = 8  zs = 1  f = 0		IDAT size = 45112

Output IDAT size = 45112 bytes (8260 bytes decrease)
Output file size = 45190 bytes (9112 bytes = 16.78% decrease)


Quitting from DTEBOP2.Rmd:323-327 [unnamed-chunk-7]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `setwd()`:
! cannot change working directory
---
Backtrace:
    ▆
 1. └─base::setwd("C:\\Users\\zcai13\\OneDrive - St. Jude Children's Research Hospital\\Desktop\\meeing_ht\\meeing_ht\\Jianrong Wu\\NPH\\BOP2+NPH\\R code\\cache")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'DTEBOP2.Rmd' failed with diagnostics:
cannot change working directory
--- failed re-building ‘DTEBOP2.Rmd’

SUMMARY: processing the following file failed:
  ‘DTEBOP2.Rmd’

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... [3s/2s] OK
* checking HTML version of manual ... [0s/0s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR, 2 NOTEs