* installing *source* package 'DRsurvCRT' ...
** this is package 'DRsurvCRT' version '0.0.1'
** using staged installation
** libs
using C++ compiler: 'g++.exe (GCC) 14.3.0'
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include'   -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include"      -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include'   -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include"      -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c frailty_cox.cpp -o frailty_cox.o
frailty_cox.cpp: In lambda function:
frailty_cox.cpp:65:72: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
   65 |   auto sdiv = [](double a,double b){ return (b<=0.0 || !arma::is_finite(b)) ? 0.0 : (a/b); };
      |                                                         ~~~~~~~~~~~~~~~^~~
In file included from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo:518,
                 from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
                 from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/RcppArmadillo.h:32,
                 from frailty_cox.cpp:1:
D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
  167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
      | ^~~~~~~~~
frailty_cox.cpp: In function 'std::pair<arma::Col<double>, arma::Col<double> > accumulate_arm_frailty(const arma::vec&, const arma::vec&, const arma::vec&, const arma::vec&, double, const arma::vec&, const arma::vec&, const arma::vec&, const arma::vec&, double, double, const arma::uvec&, const arma::uvec&)':
frailty_cox.cpp:107:28: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  107 |         if(!arma::is_finite(H[i]) || H[i] < eps) H[i] = eps;
      |             ~~~~~~~~~~~~~~~^~~~~~
D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
  167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
      | ^~~~~~~~~
frailty_cox.cpp:116:26: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  116 |       if(!arma::is_finite(K_before[i]) || K_before[i] < eps) K_before[i] = eps;
      |           ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
  167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
      | ^~~~~~~~~
frailty_cox.cpp:144:28: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  144 |         if(!arma::is_finite(K[i]) || K[i] < eps) K[i] = eps;
      |             ~~~~~~~~~~~~~~~^~~~~~
D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
  167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
      | ^~~~~~~~~
frailty_cox.cpp:149:28: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  149 |         if(!arma::is_finite(K_before[i]) || K_before[i] < eps) K_before[i] = eps;
      |             ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
  167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
      | ^~~~~~~~~
frailty_cox.cpp: In function 'Rcpp::List frailty_est(const arma::vec&, const arma::vec&, arma::vec, const arma::vec&, const double&, const double&, const arma::mat&, const arma::mat&, const arma::vec&, const arma::vec&, const double&, const double&, const arma::vec&, const arma::vec&, const double&, const double&, const arma::vec&, bool)':
frailty_cox.cpp:268:24: warning: 'arma::mat_injector<arma::Row<eT> > arma::Row<eT>::operator<<(eT) [with eT = double]' is deprecated: use braced initialiser list instead [-Wdeprecated-declarations]
  268 |   rowvec init; init << 1.0 << 1.0 << 0.0;
      |                        ^~~
In file included from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo:203:
D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo_bits/Row_bones.hpp:94:82: note: declared here
   94 |   [[deprecated("use braced initialiser list instead")]] inline mat_injector<Row> operator<<(const eT val);
      |                                                                                  ^~~~~~~~
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.6/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include'   -I"d:/rtools45/x86_64-w64-mingw32.static.posix/include"      -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign    -c marginal_cox.cpp -o marginal_cox.o
marginal_cox.cpp: In lambda function:
marginal_cox.cpp:73:72: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
   73 |   auto sdiv = [](double a,double b){ return (b<=0.0 || !arma::is_finite(b)) ? 0.0 : (a/b); };
      |                                                         ~~~~~~~~~~~~~~~^~~
In file included from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo:518,
                 from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
                 from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/RcppArmadillo.h:32,
                 from marginal_cox.cpp:1:
D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
  167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
      | ^~~~~~~~~
marginal_cox.cpp: In function 'std::pair<arma::Col<double>, arma::Col<double> > accumulate_arm(const arma::vec&, const arma::vec&, const arma::vec&, const arma::vec&, double, const arma::vec&, const arma::vec&, const arma::vec&, const arma::vec&, const arma::uvec&, const arma::uvec&)':
marginal_cox.cpp:119:26: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  119 |       if(!arma::is_finite(denomKH[i]) || denomKH[i] < eps) denomKH[i] = eps;
      |           ~~~~~~~~~~~~~~~^~~~~~~~~~~~
D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
  167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
      | ^~~~~~~~~
marginal_cox.cpp:135:26: warning: 'bool arma::is_finite(eT, const typename arma_scalar_only<eT>::result*) [with eT = double; typename arma_scalar_only<eT>::result = double]' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  135 |       if(!arma::is_finite(denomKminus[i]) || denomKminus[i] < eps) denomKminus[i] = eps;
      |           ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
  167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
      | ^~~~~~~~~
marginal_cox.cpp: In function 'Rcpp::List marginal_est(const arma::vec&, const arma::vec&, arma::vec, const arma::vec&, const double&, const double&, const arma::mat&, const arma::mat&, const arma::vec&, const arma::vec&, const arma::vec&, const arma::vec&, const arma::vec&, bool)':
marginal_cox.cpp:230:24: warning: 'arma::mat_injector<arma::Row<eT> > arma::Row<eT>::operator<<(eT) [with eT = double]' is deprecated: use braced initialiser list instead [-Wdeprecated-declarations]
  230 |   rowvec init; init << 1.0 << 1.0 << 0.0;
      |                        ^~~
In file included from D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo:203:
D:/RCompile/CRANpkg/lib/4.6/RcppArmadillo/include/current/armadillo_bits/Row_bones.hpp:94:82: note: declared here
   94 |   [[deprecated("use braced initialiser list instead")]] inline mat_injector<Row> operator<<(const eT val);
      |                                                                                  ^~~~~~~~
g++ -std=gnu++17 -shared -s -static-libgcc -o DRsurvCRT.dll tmp.def RcppExports.o frailty_cox.o marginal_cox.o -LD:/RCompile/recent/R/bin/x64 -lRlapack -LD:/RCompile/recent/R/bin/x64 -lRblas -lgfortran -lquadmath -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools45/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R/bin/x64 -lR
installing to d:/RCompile/CRANincoming/R-devel/lib/00LOCK-DRsurvCRT/00new/DRsurvCRT/libs/x64
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (DRsurvCRT)