* installing *source* package ‘DRsurvCRT’ ...
** this is package ‘DRsurvCRT’ version ‘0.0.1’
** using staged installation
** libs
using C++ compiler: ‘Debian clang version 21.1.6 (2)’
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic   -c RcppExports.cpp -o RcppExports.o
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic   -c frailty_cox.cpp -o frailty_cox.o
frailty_cox.cpp:65:63: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
   65 |   auto sdiv = [](double a,double b){ return (b<=0.0 || !arma::is_finite(b)) ? 0.0 : (a/b); };
      |                                                               ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:164:3: note: 'is_finite<double>' has been explicitly marked deprecated here
  164 | [[deprecated("change arma::is_finite(val) to std::isfinite(val)")]]
      |   ^
frailty_cox.cpp:107:19: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  107 |         if(!arma::is_finite(H[i]) || H[i] < eps) H[i] = eps;
      |                   ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:164:3: note: 'is_finite<double>' has been explicitly marked deprecated here
  164 | [[deprecated("change arma::is_finite(val) to std::isfinite(val)")]]
      |   ^
frailty_cox.cpp:116:17: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  116 |       if(!arma::is_finite(K_before[i]) || K_before[i] < eps) K_before[i] = eps;
      |                 ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:164:3: note: 'is_finite<double>' has been explicitly marked deprecated here
  164 | [[deprecated("change arma::is_finite(val) to std::isfinite(val)")]]
      |   ^
frailty_cox.cpp:144:19: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  144 |         if(!arma::is_finite(K[i]) || K[i] < eps) K[i] = eps;
      |                   ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:164:3: note: 'is_finite<double>' has been explicitly marked deprecated here
  164 | [[deprecated("change arma::is_finite(val) to std::isfinite(val)")]]
      |   ^
frailty_cox.cpp:149:19: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  149 |         if(!arma::is_finite(K_before[i]) || K_before[i] < eps) K_before[i] = eps;
      |                   ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:164:3: note: 'is_finite<double>' has been explicitly marked deprecated here
  164 | [[deprecated("change arma::is_finite(val) to std::isfinite(val)")]]
      |   ^
frailty_cox.cpp:268:21: warning: 'operator<<' is deprecated: use braced initialiser list instead [-Wdeprecated-declarations]
  268 |   rowvec init; init << 1.0 << 1.0 << 0.0;
      |                     ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/current/armadillo_bits/Row_bones.hpp:94:5: note: 'operator<<' has been explicitly marked deprecated here
   94 |   [[deprecated("use braced initialiser list instead")]] inline mat_injector<Row> operator<<(const eT val);
      |     ^
6 warnings generated.
clang++-21 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic   -c marginal_cox.cpp -o marginal_cox.o
marginal_cox.cpp:73:63: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
   73 |   auto sdiv = [](double a,double b){ return (b<=0.0 || !arma::is_finite(b)) ? 0.0 : (a/b); };
      |                                                               ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:164:3: note: 'is_finite<double>' has been explicitly marked deprecated here
  164 | [[deprecated("change arma::is_finite(val) to std::isfinite(val)")]]
      |   ^
marginal_cox.cpp:119:17: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  119 |       if(!arma::is_finite(denomKH[i]) || denomKH[i] < eps) denomKH[i] = eps;
      |                 ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:164:3: note: 'is_finite<double>' has been explicitly marked deprecated here
  164 | [[deprecated("change arma::is_finite(val) to std::isfinite(val)")]]
      |   ^
marginal_cox.cpp:135:17: warning: 'is_finite<double>' is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  135 |       if(!arma::is_finite(denomKminus[i]) || denomKminus[i] < eps) denomKminus[i] = eps;
      |                 ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:164:3: note: 'is_finite<double>' has been explicitly marked deprecated here
  164 | [[deprecated("change arma::is_finite(val) to std::isfinite(val)")]]
      |   ^
marginal_cox.cpp:230:21: warning: 'operator<<' is deprecated: use braced initialiser list instead [-Wdeprecated-declarations]
  230 |   rowvec init; init << 1.0 << 1.0 << 0.0;
      |                     ^
/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/current/armadillo_bits/Row_bones.hpp:94:5: note: 'operator<<' has been explicitly marked deprecated here
   94 |   [[deprecated("use braced initialiser list instead")]] inline mat_injector<Row> operator<<(const eT val);
      |     ^
4 warnings generated.
clang++-21 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-21/lib -Wl,-O1 -o DRsurvCRT.so RcppExports.o frailty_cox.o marginal_cox.o -L/home/hornik/tmp/R-d-clang-21/lib -lR
installing to /srv/hornik/tmp/CRAN_pretest/DRsurvCRT.Rcheck/00LOCK-DRsurvCRT/00new/DRsurvCRT/libs
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (DRsurvCRT)