# Loads helper_00-freqs.R # From DNAtools01022, i.e. version 0.1-22 from before refactoring if (FALSE) { #devtools::load_all('.') OLD_db_comp_dbExample_5 <- dbCompare(dbExample, hit = 5, trace = FALSE, threads = 1) dput(OLD_db_comp_dbExample_5) } OLD_db_comp_dbExample_5 <- structure(list(m = structure(c(102L, 206L, 165L, 72L, 22L, 6L, 0L, 0L, 0L, 0L, 0L, 1368L, 2114L, 1477L, 556L, 149L, 19L, 2L, 0L, 0L, 0L, 0L, 7122L, 10013L, 5710L, 1821L, 360L, 44L, 3L, 0L, 0L, 0L, 0L, 21878L, 26084L, 12566L, 3250L, 493L, 41L, 0L, 0L, 0L, 0L, 0L, 44189L, 43656L, 17049L, 3361L, 379L, 26L, 0L, 0L, 0L, 0L, 0L, 59463L, 47418L, 14642L, 2135L, 156L, 5L, 0L, 0L, 0L, 0L, 0L, 54601L, 34320L, 7570L, 719L, 34L, 0L, 0L, 0L, 0L, 0L, 0L, 34203L, 15463L, 2220L, 116L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 13571L, 4145L, 310L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 3281L, 472L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 353L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L), .Dim = c(11L, 11L), .Dimnames = structure(list( match = c("0", "1", "2", "3", "4", "5", "6", "7", "8", "9", "10"), partial = c("0", "1", "2", "3", "4", "5", "6", "7", "8", "9", "10")), .Names = c("match", "partial"))), hits = structure(list( id1 = c("1", "1", "2", "6", "16", "16", "18", "19", "25", "28", "35", "40", "45", "50", "50", "50", "64", "67", "69", "69", "69", "76", "77", "77", "78", "79", "85", "92", "92", "99", "125", "134", "134", "139", "151", "152", "153", "153", "161", "161", "166", "167", "171", "171", "177", "188", "192", "197", "213", "215", "215", "218", "226", "226", "229", "230", "235", "238", "252", "252", "254", "254", "255", "258", "266", "273", "288", "290", "295", "298", "300", "305", "325", "327", "340", "345", "348", "350", "350", "352", "354", "361", "367", "379", "379", "381", "383", "385", "388", "397", "405", "409", "412", "412", "412", "413", "413", "413", "413", "415", "422", "436", "439", "440", "444", "447", "455", "456", "480", "488", "506", "511", "513", "514", "515", "529", "545", "551", "555", "562", "568", "568", "571", "576", "585", "622", "625", "626", "630", "639", "641", "651", "652", "660", "674", "679", "683", "688", "694", "725", "775", "776", "795", "798", "867", "956" ), id2 = c("416", "458", "63", "47", "105", "408", "997", "301", "52", "535", "65", "520", "761", "218", "575", "801", "401", "352", "294", "298", "997", "876", "356", "560", "125", "840", "803", "298", "485", "608", "546", "350", "553", "730", "764", "581", "652", "687", "881", "912", "677", "777", "258", "273", "298", "506", "390", "570", "819", "788", "857", "377", "759", "974", "456", "500", "884", "757", "292", "372", "474", "742", "746", "659", "315", "413", "658", "324", "299", "943", "441", "393", "877", "838", "518", "781", "854", "392", "515", "548", "589", "502", "877", "560", "795", "851", "910", "655", "506", "976", "645", "893", "571", "750", "842", "435", "580", "900", "932", "512", "881", "723", "640", "770", "482", "685", "567", "634", "574", "870", "910", "801", "888", "675", "839", "761", "799", "748", "622", "898", "913", "963", "681", "615", "611", "763", "641", "945", "777", "890", "697", "782", "676", "921", "828", "737", "712", "778", "855", "921", "958", "994", "801", "953", "928", "985"), match = c(5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 6L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 6L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 6L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 6L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 5L, 6L, 5L, 5L, 5L, 5L, 5L, 5L, 5L), partial = c(2L, 3L, 0L, 3L, 3L, 3L, 1L, 3L, 1L, 3L, 4L, 2L, 3L, 5L, 3L, 3L, 4L, 2L, 1L, 3L, 2L, 4L, 2L, 2L, 0L, 4L, 0L, 3L, 4L, 4L, 4L, 4L, 2L, 3L, 5L, 1L, 2L, 2L, 2L, 2L, 1L, 1L, 2L, 4L, 3L, 1L, 2L, 2L, 3L, 4L, 1L, 2L, 3L, 2L, 3L, 2L, 4L, 3L, 0L, 2L, 3L, 2L, 2L, 3L, 3L, 3L, 3L, 2L, 4L, 3L, 3L, 4L, 4L, 2L, 2L, 0L, 2L, 2L, 4L, 4L, 3L, 2L, 1L, 1L, 4L, 3L, 2L, 1L, 5L, 2L, 2L, 3L, 4L, 3L, 1L, 3L, 2L, 4L, 2L, 3L, 1L, 2L, 4L, 5L, 1L, 3L, 3L, 2L, 2L, 4L, 4L, 2L, 2L, 3L, 1L, 2L, 3L, 4L, 3L, 0L, 3L, 3L, 4L, 2L, 3L, 5L, 2L, 1L, 2L, 3L, 3L, 2L, 2L, 2L, 1L, 2L, 1L, 4L, 2L, 2L, 1L, 1L, 2L, 4L, 3L, 1L)), .Names = c("id1", "id2", "match", "partial"), row.names = c(NA, -146L), class = "data.frame"), excludedProfiles = "none"), .Names = c("m", "hits", "excludedProfiles" ), call = structure(list(loci = 10, single = 0, collapse = FALSE, vector = FALSE, wildcard = c(FALSE, FALSE), hit = 5), .Names = c("loci", "single", "collapse", "vector", "wildcard", "hit")), class = "dbcompare")