* using log directory ‘/srv/hornik/tmp/CRAN/DFA.Rcheck’ * using R Under development (unstable) (2024-02-19 r85946) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 17.0.6 (5) Debian flang-new version 17.0.6 (5) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘DFA/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘DFA’ version ‘1.0.0’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [4s/35s] NOTE Maintainer: ‘Victor Barreto Mesquita ’ Possibly misspelled words in DESCRIPTION: ABI (7:317) Barreto (7:533) Benadjaoud (7:891) Bioinformatics (7:726) Canas (7:585) Danilevicz (7:815) Filho (7:568) Florêncio (7:542) Hees (7:837) Heide (7:857) Landré (7:879) Mendes (7:552) Mesquita (7:516) Oliveira (7:559) Paulo (7:579) Rodrigues (7:591) Sabia (7:909) accelerometer (7:1034) der (7:853) interpretability (7:1008) The Description field contains 1278-1284. , Please write DOIs as . * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘DFA’ can be installed ... [1s/1s] WARNING Found the following significant warnings: Warning: /srv/hornik/tmp/CRAN/DFA.Rcheck/00_pkg_src/DFA/man/DFA_aux.Rd:16: unknown macro '\item' Warning: /srv/hornik/tmp/CRAN/DFA.Rcheck/00_pkg_src/DFA/man/DFA_aux.Rd:18: unknown macro '\item' Warning: /srv/hornik/tmp/CRAN/DFA.Rcheck/00_pkg_src/DFA/man/DFA_aux.Rd:21: unknown macro '\item' Warning: /srv/hornik/tmp/CRAN/DFA.Rcheck/00_pkg_src/DFA/man/DFA_aux.Rd:24: unknown macro '\item' Warning: /srv/hornik/tmp/CRAN/DFA.Rcheck/00_pkg_src/DFA/man/DFA_aux.Rd:27: unknown macro '\item' Warning: /srv/hornik/tmp/CRAN/DFA.Rcheck/00_pkg_src/DFA/man/DFA_aux.Rd:34: unexpected section header '\details' Warning: /srv/hornik/tmp/CRAN/DFA.Rcheck/00_pkg_src/DFA/man/DFA_aux.Rd:37: unexpected section header '\value' Warning: /srv/hornik/tmp/CRAN/DFA.Rcheck/00_pkg_src/DFA/man/DFA_aux.Rd:42: unexpected section header '\author' Warning: /srv/hornik/tmp/CRAN/DFA.Rcheck/00_pkg_src/DFA/man/DFA_aux.Rd:46: unexpected section header '\references' Warning: /srv/hornik/tmp/CRAN/DFA.Rcheck/00_pkg_src/DFA/man/DFA_aux.Rd:66: unexpected section header '\examples' Warning: /srv/hornik/tmp/CRAN/DFA.Rcheck/00_pkg_src/DFA/man/DFA_aux.Rd:71: unexpected END_OF_INPUT ' See ‘/srv/hornik/tmp/CRAN/DFA.Rcheck/00install.out’ for details. * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Description field: should contain one or more complete sentences. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [0s/0s] OK * checking whether the package can be loaded with stated dependencies ... [0s/0s] OK * checking whether the package can be unloaded cleanly ... [0s/0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK * checking whether the namespace can be unloaded cleanly ... [0s/0s] OK * checking loading without being on the library search path ... [0s/0s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [3s/3s] NOTE Found if() conditions comparing class() to string: File ‘DFA/R/DFA.R’: if (class(file) == "data.frame" || class(file2) == "data.frame") ... File ‘DFA/R/DFA.R’: if (class(file) == "data.frame" || class(file2) == "data.frame") ... File ‘DFA/R/DFA.R’: if (class(file) == "data.frame" || class(file2) == "data.frame") ... File ‘DFA/R/DFA.R’: if (class(file) == "data.frame" || class(file2) == "data.frame" || class(file3) == "data.frame" || class(file4) == "data.frame") ... Use inherits() (or maybe is()) instead. * checking Rd files ... [0s/0s] WARNING prepare_Rd: ./man/DFA_aux.Rd:16: unknown macro '\item' prepare_Rd: ./man/DFA_aux.Rd:18: unknown macro '\item' prepare_Rd: ./man/DFA_aux.Rd:21: unknown macro '\item' prepare_Rd: ./man/DFA_aux.Rd:24: unknown macro '\item' prepare_Rd: ./man/DFA_aux.Rd:27: unknown macro '\item' prepare_Rd: ./man/DFA_aux.Rd:34: unexpected section header '\details' prepare_Rd: ./man/DFA_aux.Rd:37: unexpected section header '\value' prepare_Rd: ./man/DFA_aux.Rd:42: unexpected section header '\author' prepare_Rd: ./man/DFA_aux.Rd:46: unexpected section header '\references' prepare_Rd: ./man/DFA_aux.Rd:66: unexpected section header '\examples' prepare_Rd: ./man/DFA_aux.Rd:71: unexpected END_OF_INPUT ' ' checkRd: (-1) DFA_aux.Rd:16: Lost braces 16 | \item{box_size}{ | ^ checkRd: (-1) DFA_aux.Rd:16-23: Lost braces 16 | \item{box_size}{ | ^ checkRd: (-1) DFA_aux.Rd:18: Lost braces 18 | \item{ninbox2}{ | ^ checkRd: (-1) DFA_aux.Rd:18-20: Lost braces 18 | \item{ninbox2}{ | ^ checkRd: (-1) DFA_aux.Rd:21: Lost braces 21 | \item{file}{ | ^ checkRd: (-1) DFA_aux.Rd:21-22: Lost braces 21 | \item{file}{ | ^ checkRd: (-1) DFA_aux.Rd:24: Lost braces 24 | \item{y_k}{ | ^ checkRd: (-1) DFA_aux.Rd:24-26: Lost braces 24 | \item{y_k}{ | ^ checkRd: (-1) DFA_aux.Rd:27: Lost braces 27 | \item{m}{ | ^ checkRd: (-1) DFA_aux.Rd:27-28: Lost braces 27 | \item{m}{ | ^ checkRd: (-1) DFA_aux.Rd:34-36: Lost braces 34 | \details{ | ^ checkRd: (-1) DFA_aux.Rd:37-40: Lost braces 37 | \value{ | ^ checkRd: (-1) DFA_aux.Rd:42-44: Lost braces 42 | \author{ | ^ checkRd: (-1) DFA_aux.Rd:46-64: Lost braces 46 | \references{ | ^ checkRd: (-1) DFA_aux.Rd:66-68: Lost braces 66 | \examples{ | ^ * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... WARNING Undocumented arguments in Rd file 'DFA_aux.Rd' ‘box_size’ ‘ninbox2’ ‘file’ ‘y_k’ ‘m’ Functions with \usage entries need to have the appropriate \alias entries, and all their arguments documented. The \usage entries must correspond to syntactically valid R code. See chapter ‘Writing R documentation files’ in the ‘Writing R Extensions’ manual. * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [0s/0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... [10s/10s] NOTE Examples with CPU (user + system) or elapsed time > 5s user system elapsed SSP 6.621 0 6.623 * checking PDF version of manual ... [3s/3s] OK * checking HTML version of manual ... [1s/1s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 3 WARNINGs, 4 NOTEs