* installing *source* package 'DEploid' ...
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 13.2.0'
using C++ compiler: 'g++.exe (GCC) 13.2.0'
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1  -I/usr/share/R/include/ -IDEploid/ -IDEploid/codeCogs/ -IDEploid/random/ -IDEploid/gzstream/ -IDEploid/lasso/  -DVERSION="\"R\"" -DRBUILD -DSTRICT_R_HEADERS -Wno-return-stack-address -Wno-strict-prototypes -Wno-bitwise-instead-of-logical   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -c rvcf.cpp -o rvcf.o
cc1plus.exe: warning: command-line option '-Wno-strict-prototypes' is valid for C/ObjC but not for C++
cc1plus.exe: note: unrecognized command-line option '-Wno-bitwise-instead-of-logical' may have been intended to silence earlier diagnostics
cc1plus.exe: note: unrecognized command-line option '-Wno-return-stack-address' may have been intended to silence earlier diagnostics
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1  -I/usr/share/R/include/ -IDEploid/ -IDEploid/codeCogs/ -IDEploid/random/ -IDEploid/gzstream/ -IDEploid/lasso/  -DVERSION="\"R\"" -DRBUILD -DSTRICT_R_HEADERS -Wno-return-stack-address -Wno-strict-prototypes -Wno-bitwise-instead-of-logical   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -c dEploidr.cpp -o dEploidr.o
cc1plus.exe: warning: command-line option '-Wno-strict-prototypes' is valid for C/ObjC but not for C++
cc1plus.exe: note: unrecognized command-line option '-Wno-bitwise-instead-of-logical' may have been intended to silence earlier diagnostics
cc1plus.exe: note: unrecognized command-line option '-Wno-return-stack-address' may have been intended to silence earlier diagnostics
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1  -I/usr/share/R/include/ -IDEploid/ -IDEploid/codeCogs/ -IDEploid/random/ -IDEploid/gzstream/ -IDEploid/lasso/  -DVERSION="\"R\"" -DRBUILD -DSTRICT_R_HEADERS -Wno-return-stack-address -Wno-strict-prototypes -Wno-bitwise-instead-of-logical   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -c test_exports.cpp -o test_exports.o
cc1plus.exe: warning: command-line option '-Wno-strict-prototypes' is valid for C/ObjC but not for C++
cc1plus.exe: note: unrecognized command-line option '-Wno-bitwise-instead-of-logical' may have been intended to silence earlier diagnostics
cc1plus.exe: note: unrecognized command-line option '-Wno-return-stack-address' may have been intended to silence earlier diagnostics
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1  -I/usr/share/R/include/ -IDEploid/ -IDEploid/codeCogs/ -IDEploid/random/ -IDEploid/gzstream/ -IDEploid/lasso/  -DVERSION="\"R\"" -DRBUILD -DSTRICT_R_HEADERS -Wno-return-stack-address -Wno-strict-prototypes -Wno-bitwise-instead-of-logical   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -c RcppExports.cpp -o RcppExports.o
cc1plus.exe: warning: command-line option '-Wno-strict-prototypes' is valid for C/ObjC but not for C++
cc1plus.exe: note: unrecognized command-line option '-Wno-bitwise-instead-of-logical' may have been intended to silence earlier diagnostics
cc1plus.exe: note: unrecognized command-line option '-Wno-return-stack-address' may have been intended to silence earlier diagnostics
gcc  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c init.c -o init.o
init.c:13:1: warning: function declaration isn't a prototype [-Wstrict-prototypes]
   13 | extern SEXP _DEploid_test_RRG_sample();
      | ^~~~~~
init.c:15:1: warning: function declaration isn't a prototype [-Wstrict-prototypes]
   15 | extern SEXP _DEploid_test_RRG_sampleUnitExpo();
      | ^~~~~~
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1  -I/usr/share/R/include/ -IDEploid/ -IDEploid/codeCogs/ -IDEploid/random/ -IDEploid/gzstream/ -IDEploid/lasso/  -DVERSION="\"R\"" -DRBUILD -DSTRICT_R_HEADERS -Wno-return-stack-address -Wno-strict-prototypes -Wno-bitwise-instead-of-logical   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -c DEploid/dEploidIO.cpp -o DEploid/dEploidIO.o
cc1plus.exe: warning: command-line option '-Wno-strict-prototypes' is valid for C/ObjC but not for C++
cc1plus.exe: note: unrecognized command-line option '-Wno-bitwise-instead-of-logical' may have been intended to silence earlier diagnostics
cc1plus.exe: note: unrecognized command-line option '-Wno-return-stack-address' may have been intended to silence earlier diagnostics
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1  -I/usr/share/R/include/ -IDEploid/ -IDEploid/codeCogs/ -IDEploid/random/ -IDEploid/gzstream/ -IDEploid/lasso/  -DVERSION="\"R\"" -DRBUILD -DSTRICT_R_HEADERS -Wno-return-stack-address -Wno-strict-prototypes -Wno-bitwise-instead-of-logical   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -c DEploid/ibd.cpp -o DEploid/ibd.o
cc1plus.exe: warning: command-line option '-Wno-strict-prototypes' is valid for C/ObjC but not for C++
cc1plus.exe: note: unrecognized command-line option '-Wno-bitwise-instead-of-logical' may have been intended to silence earlier diagnostics
cc1plus.exe: note: unrecognized command-line option '-Wno-return-stack-address' may have been intended to silence earlier diagnostics
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1  -I/usr/share/R/include/ -IDEploid/ -IDEploid/codeCogs/ -IDEploid/random/ -IDEploid/gzstream/ -IDEploid/lasso/  -DVERSION="\"R\"" -DRBUILD -DSTRICT_R_HEADERS -Wno-return-stack-address -Wno-strict-prototypes -Wno-bitwise-instead-of-logical   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -c DEploid/mcmc.cpp -o DEploid/mcmc.o
cc1plus.exe: warning: command-line option '-Wno-strict-prototypes' is valid for C/ObjC but not for C++
cc1plus.exe: note: unrecognized command-line option '-Wno-bitwise-instead-of-logical' may have been intended to silence earlier diagnostics
cc1plus.exe: note: unrecognized command-line option '-Wno-return-stack-address' may have been intended to silence earlier diagnostics
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1  -I/usr/share/R/include/ -IDEploid/ -IDEploid/codeCogs/ -IDEploid/random/ -IDEploid/gzstream/ -IDEploid/lasso/  -DVERSION="\"R\"" -DRBUILD -DSTRICT_R_HEADERS -Wno-return-stack-address -Wno-strict-prototypes -Wno-bitwise-instead-of-logical   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -c DEploid/panel.cpp -o DEploid/panel.o
cc1plus.exe: warning: command-line option '-Wno-strict-prototypes' is valid for C/ObjC but not for C++
cc1plus.exe: note: unrecognized command-line option '-Wno-bitwise-instead-of-logical' may have been intended to silence earlier diagnostics
cc1plus.exe: note: unrecognized command-line option '-Wno-return-stack-address' may have been intended to silence earlier diagnostics
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1  -I/usr/share/R/include/ -IDEploid/ -IDEploid/codeCogs/ -IDEploid/random/ -IDEploid/gzstream/ -IDEploid/lasso/  -DVERSION="\"R\"" -DRBUILD -DSTRICT_R_HEADERS -Wno-return-stack-address -Wno-strict-prototypes -Wno-bitwise-instead-of-logical   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -c DEploid/txtReader.cpp -o DEploid/txtReader.o
cc1plus.exe: warning: command-line option '-Wno-strict-prototypes' is valid for C/ObjC but not for C++
cc1plus.exe: note: unrecognized command-line option '-Wno-bitwise-instead-of-logical' may have been intended to silence earlier diagnostics
cc1plus.exe: note: unrecognized command-line option '-Wno-return-stack-address' may have been intended to silence earlier diagnostics
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1  -I/usr/share/R/include/ -IDEploid/ -IDEploid/codeCogs/ -IDEploid/random/ -IDEploid/gzstream/ -IDEploid/lasso/  -DVERSION="\"R\"" -DRBUILD -DSTRICT_R_HEADERS -Wno-return-stack-address -Wno-strict-prototypes -Wno-bitwise-instead-of-logical   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -c DEploid/updateHap.cpp -o DEploid/updateHap.o
cc1plus.exe: warning: command-line option '-Wno-strict-prototypes' is valid for C/ObjC but not for C++
cc1plus.exe: note: unrecognized command-line option '-Wno-bitwise-instead-of-logical' may have been intended to silence earlier diagnostics
cc1plus.exe: note: unrecognized command-line option '-Wno-return-stack-address' may have been intended to silence earlier diagnostics
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1  -I/usr/share/R/include/ -IDEploid/ -IDEploid/codeCogs/ -IDEploid/random/ -IDEploid/gzstream/ -IDEploid/lasso/  -DVERSION="\"R\"" -DRBUILD -DSTRICT_R_HEADERS -Wno-return-stack-address -Wno-strict-prototypes -Wno-bitwise-instead-of-logical   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -c DEploid/utility.cpp -o DEploid/utility.o
cc1plus.exe: warning: command-line option '-Wno-strict-prototypes' is valid for C/ObjC but not for C++
cc1plus.exe: note: unrecognized command-line option '-Wno-bitwise-instead-of-logical' may have been intended to silence earlier diagnostics
cc1plus.exe: note: unrecognized command-line option '-Wno-return-stack-address' may have been intended to silence earlier diagnostics
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1  -I/usr/share/R/include/ -IDEploid/ -IDEploid/codeCogs/ -IDEploid/random/ -IDEploid/gzstream/ -IDEploid/lasso/  -DVERSION="\"R\"" -DRBUILD -DSTRICT_R_HEADERS -Wno-return-stack-address -Wno-strict-prototypes -Wno-bitwise-instead-of-logical   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -c DEploid/variantIndex.cpp -o DEploid/variantIndex.o
cc1plus.exe: warning: command-line option '-Wno-strict-prototypes' is valid for C/ObjC but not for C++
cc1plus.exe: note: unrecognized command-line option '-Wno-bitwise-instead-of-logical' may have been intended to silence earlier diagnostics
cc1plus.exe: note: unrecognized command-line option '-Wno-return-stack-address' may have been intended to silence earlier diagnostics
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1  -I/usr/share/R/include/ -IDEploid/ -IDEploid/codeCogs/ -IDEploid/random/ -IDEploid/gzstream/ -IDEploid/lasso/  -DVERSION="\"R\"" -DRBUILD -DSTRICT_R_HEADERS -Wno-return-stack-address -Wno-strict-prototypes -Wno-bitwise-instead-of-logical   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -c DEploid/vcfReader.cpp -o DEploid/vcfReader.o
cc1plus.exe: warning: command-line option '-Wno-strict-prototypes' is valid for C/ObjC but not for C++
cc1plus.exe: note: unrecognized command-line option '-Wno-bitwise-instead-of-logical' may have been intended to silence earlier diagnostics
cc1plus.exe: note: unrecognized command-line option '-Wno-return-stack-address' may have been intended to silence earlier diagnostics
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1  -I/usr/share/R/include/ -IDEploid/ -IDEploid/codeCogs/ -IDEploid/random/ -IDEploid/gzstream/ -IDEploid/lasso/  -DVERSION="\"R\"" -DRBUILD -DSTRICT_R_HEADERS -Wno-return-stack-address -Wno-strict-prototypes -Wno-bitwise-instead-of-logical   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -c DEploid/gzstream/gzstream.cpp -o DEploid/gzstream/gzstream.o
cc1plus.exe: warning: command-line option '-Wno-strict-prototypes' is valid for C/ObjC but not for C++
cc1plus.exe: note: unrecognized command-line option '-Wno-bitwise-instead-of-logical' may have been intended to silence earlier diagnostics
cc1plus.exe: note: unrecognized command-line option '-Wno-return-stack-address' may have been intended to silence earlier diagnostics
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1  -I/usr/share/R/include/ -IDEploid/ -IDEploid/codeCogs/ -IDEploid/random/ -IDEploid/gzstream/ -IDEploid/lasso/  -DVERSION="\"R\"" -DRBUILD -DSTRICT_R_HEADERS -Wno-return-stack-address -Wno-strict-prototypes -Wno-bitwise-instead-of-logical   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -c DEploid/random/fastfunc.cpp -o DEploid/random/fastfunc.o
cc1plus.exe: warning: command-line option '-Wno-strict-prototypes' is valid for C/ObjC but not for C++
cc1plus.exe: note: unrecognized command-line option '-Wno-bitwise-instead-of-logical' may have been intended to silence earlier diagnostics
cc1plus.exe: note: unrecognized command-line option '-Wno-return-stack-address' may have been intended to silence earlier diagnostics
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1  -I/usr/share/R/include/ -IDEploid/ -IDEploid/codeCogs/ -IDEploid/random/ -IDEploid/gzstream/ -IDEploid/lasso/  -DVERSION="\"R\"" -DRBUILD -DSTRICT_R_HEADERS -Wno-return-stack-address -Wno-strict-prototypes -Wno-bitwise-instead-of-logical   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -c DEploid/random/random_generator.cpp -o DEploid/random/random_generator.o
cc1plus.exe: warning: command-line option '-Wno-strict-prototypes' is valid for C/ObjC but not for C++
cc1plus.exe: note: unrecognized command-line option '-Wno-bitwise-instead-of-logical' may have been intended to silence earlier diagnostics
cc1plus.exe: note: unrecognized command-line option '-Wno-return-stack-address' may have been intended to silence earlier diagnostics
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1  -I/usr/share/R/include/ -IDEploid/ -IDEploid/codeCogs/ -IDEploid/random/ -IDEploid/gzstream/ -IDEploid/lasso/  -DVERSION="\"R\"" -DRBUILD -DSTRICT_R_HEADERS -Wno-return-stack-address -Wno-strict-prototypes -Wno-bitwise-instead-of-logical   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -c DEploid/random/mersenne_twister.cpp -o DEploid/random/mersenne_twister.o
cc1plus.exe: warning: command-line option '-Wno-strict-prototypes' is valid for C/ObjC but not for C++
cc1plus.exe: note: unrecognized command-line option '-Wno-bitwise-instead-of-logical' may have been intended to silence earlier diagnostics
cc1plus.exe: note: unrecognized command-line option '-Wno-return-stack-address' may have been intended to silence earlier diagnostics
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1  -I/usr/share/R/include/ -IDEploid/ -IDEploid/codeCogs/ -IDEploid/random/ -IDEploid/gzstream/ -IDEploid/lasso/  -DVERSION="\"R\"" -DRBUILD -DSTRICT_R_HEADERS -Wno-return-stack-address -Wno-strict-prototypes -Wno-bitwise-instead-of-logical   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -c DEploid/export/dEploidIOExportPosteriorProb.cpp -o DEploid/export/dEploidIOExportPosteriorProb.o
cc1plus.exe: warning: command-line option '-Wno-strict-prototypes' is valid for C/ObjC but not for C++
cc1plus.exe: note: unrecognized command-line option '-Wno-bitwise-instead-of-logical' may have been intended to silence earlier diagnostics
cc1plus.exe: note: unrecognized command-line option '-Wno-return-stack-address' may have been intended to silence earlier diagnostics
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1  -I/usr/share/R/include/ -IDEploid/ -IDEploid/codeCogs/ -IDEploid/random/ -IDEploid/gzstream/ -IDEploid/lasso/  -DVERSION="\"R\"" -DRBUILD -DSTRICT_R_HEADERS -Wno-return-stack-address -Wno-strict-prototypes -Wno-bitwise-instead-of-logical   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -c DEploid/export/writeMcmcRelated.cpp -o DEploid/export/writeMcmcRelated.o
cc1plus.exe: warning: command-line option '-Wno-strict-prototypes' is valid for C/ObjC but not for C++
cc1plus.exe: note: unrecognized command-line option '-Wno-bitwise-instead-of-logical' may have been intended to silence earlier diagnostics
cc1plus.exe: note: unrecognized command-line option '-Wno-return-stack-address' may have been intended to silence earlier diagnostics
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1  -I/usr/share/R/include/ -IDEploid/ -IDEploid/codeCogs/ -IDEploid/random/ -IDEploid/gzstream/ -IDEploid/lasso/  -DVERSION="\"R\"" -DRBUILD -DSTRICT_R_HEADERS -Wno-return-stack-address -Wno-strict-prototypes -Wno-bitwise-instead-of-logical   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -c DEploid/lasso/dEploidLasso.cpp -o DEploid/lasso/dEploidLasso.o
cc1plus.exe: warning: command-line option '-Wno-strict-prototypes' is valid for C/ObjC but not for C++
cc1plus.exe: note: unrecognized command-line option '-Wno-bitwise-instead-of-logical' may have been intended to silence earlier diagnostics
cc1plus.exe: note: unrecognized command-line option '-Wno-return-stack-address' may have been intended to silence earlier diagnostics
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1  -I/usr/share/R/include/ -IDEploid/ -IDEploid/codeCogs/ -IDEploid/random/ -IDEploid/gzstream/ -IDEploid/lasso/  -DVERSION="\"R\"" -DRBUILD -DSTRICT_R_HEADERS -Wno-return-stack-address -Wno-strict-prototypes -Wno-bitwise-instead-of-logical   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -c DEploid/lasso/lasso.cpp -o DEploid/lasso/lasso.o
cc1plus.exe: warning: command-line option '-Wno-strict-prototypes' is valid for C/ObjC but not for C++
cc1plus.exe: note: unrecognized command-line option '-Wno-bitwise-instead-of-logical' may have been intended to silence earlier diagnostics
cc1plus.exe: note: unrecognized command-line option '-Wno-return-stack-address' may have been intended to silence earlier diagnostics
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1  -I/usr/share/R/include/ -IDEploid/ -IDEploid/codeCogs/ -IDEploid/random/ -IDEploid/gzstream/ -IDEploid/lasso/  -DVERSION="\"R\"" -DRBUILD -DSTRICT_R_HEADERS -Wno-return-stack-address -Wno-strict-prototypes -Wno-bitwise-instead-of-logical   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -c DEploid/lasso/lassoDBG.cpp -o DEploid/lasso/lassoDBG.o
cc1plus.exe: warning: command-line option '-Wno-strict-prototypes' is valid for C/ObjC but not for C++
cc1plus.exe: note: unrecognized command-line option '-Wno-bitwise-instead-of-logical' may have been intended to silence earlier diagnostics
cc1plus.exe: note: unrecognized command-line option '-Wno-return-stack-address' may have been intended to silence earlier diagnostics
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1  -I/usr/share/R/include/ -IDEploid/ -IDEploid/codeCogs/ -IDEploid/random/ -IDEploid/gzstream/ -IDEploid/lasso/  -DVERSION="\"R\"" -DRBUILD -DSTRICT_R_HEADERS -Wno-return-stack-address -Wno-strict-prototypes -Wno-bitwise-instead-of-logical   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -c DEploid/debug/vcfReaderDebug.cpp -o DEploid/debug/vcfReaderDebug.o
cc1plus.exe: warning: command-line option '-Wno-strict-prototypes' is valid for C/ObjC but not for C++
cc1plus.exe: note: unrecognized command-line option '-Wno-bitwise-instead-of-logical' may have been intended to silence earlier diagnostics
cc1plus.exe: note: unrecognized command-line option '-Wno-return-stack-address' may have been intended to silence earlier diagnostics
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1  -I/usr/share/R/include/ -IDEploid/ -IDEploid/codeCogs/ -IDEploid/random/ -IDEploid/gzstream/ -IDEploid/lasso/  -DVERSION="\"R\"" -DRBUILD -DSTRICT_R_HEADERS -Wno-return-stack-address -Wno-strict-prototypes -Wno-bitwise-instead-of-logical   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -c DEploid/debug/mcmcDebug.cpp -o DEploid/debug/mcmcDebug.o
cc1plus.exe: warning: command-line option '-Wno-strict-prototypes' is valid for C/ObjC but not for C++
cc1plus.exe: note: unrecognized command-line option '-Wno-bitwise-instead-of-logical' may have been intended to silence earlier diagnostics
cc1plus.exe: note: unrecognized command-line option '-Wno-return-stack-address' may have been intended to silence earlier diagnostics
g++ -std=gnu++17 -shared -s -static-libgcc -o DEploid.dll tmp.def rvcf.o dEploidr.o test_exports.o RcppExports.o init.o DEploid/dEploidIO.o DEploid/ibd.o DEploid/mcmc.o DEploid/panel.o DEploid/txtReader.o DEploid/updateHap.o DEploid/utility.o DEploid/variantIndex.o DEploid/vcfReader.o DEploid/gzstream/gzstream.o DEploid/random/fastfunc.o DEploid/random/random_generator.o DEploid/random/mersenne_twister.o DEploid/export/dEploidIOExportPosteriorProb.o DEploid/export/writeMcmcRelated.o DEploid/lasso/dEploidLasso.o DEploid/lasso/lasso.o DEploid/lasso/lassoDBG.o DEploid/debug/vcfReaderDebug.o DEploid/debug/mcmcDebug.o -lz -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R/bin/x64 -lR
installing to d:/RCompile/CRANincoming/R-devel/lib/00LOCK-DEploid/00new/DEploid/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (DEploid)