* installing *source* package 'DEploid' ...
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 13.2.0'
using C++ compiler: 'g++.exe (GCC) 13.2.0'
using C++11
g++  -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1  -I/usr/share/R/include/ -IDEploid/ -IDEploid/codeCogs/ -IDEploid/random/ -IDEploid/gzstream/ -IDEploid/lasso/  -DVERSION="\"R\"" -DRBUILD -DSTRICT_R_HEADERS   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -c rvcf.cpp -o rvcf.o
g++  -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1  -I/usr/share/R/include/ -IDEploid/ -IDEploid/codeCogs/ -IDEploid/random/ -IDEploid/gzstream/ -IDEploid/lasso/  -DVERSION="\"R\"" -DRBUILD -DSTRICT_R_HEADERS   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -c dEploidr.cpp -o dEploidr.o
g++  -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1  -I/usr/share/R/include/ -IDEploid/ -IDEploid/codeCogs/ -IDEploid/random/ -IDEploid/gzstream/ -IDEploid/lasso/  -DVERSION="\"R\"" -DRBUILD -DSTRICT_R_HEADERS   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -c test_exports.cpp -o test_exports.o
g++  -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1  -I/usr/share/R/include/ -IDEploid/ -IDEploid/codeCogs/ -IDEploid/random/ -IDEploid/gzstream/ -IDEploid/lasso/  -DVERSION="\"R\"" -DRBUILD -DSTRICT_R_HEADERS   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -c RcppExports.cpp -o RcppExports.o
gcc  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c init.c -o init.o
init.c:13:1: warning: function declaration isn't a prototype [-Wstrict-prototypes]
   13 | extern SEXP _DEploid_test_RRG_sample();
      | ^~~~~~
init.c:15:1: warning: function declaration isn't a prototype [-Wstrict-prototypes]
   15 | extern SEXP _DEploid_test_RRG_sampleUnitExpo();
      | ^~~~~~
g++  -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1  -I/usr/share/R/include/ -IDEploid/ -IDEploid/codeCogs/ -IDEploid/random/ -IDEploid/gzstream/ -IDEploid/lasso/  -DVERSION="\"R\"" -DRBUILD -DSTRICT_R_HEADERS   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -c DEploid/dEploidIO.cpp -o DEploid/dEploidIO.o
g++  -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1  -I/usr/share/R/include/ -IDEploid/ -IDEploid/codeCogs/ -IDEploid/random/ -IDEploid/gzstream/ -IDEploid/lasso/  -DVERSION="\"R\"" -DRBUILD -DSTRICT_R_HEADERS   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -c DEploid/ibd.cpp -o DEploid/ibd.o
g++  -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1  -I/usr/share/R/include/ -IDEploid/ -IDEploid/codeCogs/ -IDEploid/random/ -IDEploid/gzstream/ -IDEploid/lasso/  -DVERSION="\"R\"" -DRBUILD -DSTRICT_R_HEADERS   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -c DEploid/mcmc.cpp -o DEploid/mcmc.o
g++  -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1  -I/usr/share/R/include/ -IDEploid/ -IDEploid/codeCogs/ -IDEploid/random/ -IDEploid/gzstream/ -IDEploid/lasso/  -DVERSION="\"R\"" -DRBUILD -DSTRICT_R_HEADERS   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -c DEploid/panel.cpp -o DEploid/panel.o
g++  -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1  -I/usr/share/R/include/ -IDEploid/ -IDEploid/codeCogs/ -IDEploid/random/ -IDEploid/gzstream/ -IDEploid/lasso/  -DVERSION="\"R\"" -DRBUILD -DSTRICT_R_HEADERS   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -c DEploid/txtReader.cpp -o DEploid/txtReader.o
g++  -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1  -I/usr/share/R/include/ -IDEploid/ -IDEploid/codeCogs/ -IDEploid/random/ -IDEploid/gzstream/ -IDEploid/lasso/  -DVERSION="\"R\"" -DRBUILD -DSTRICT_R_HEADERS   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -c DEploid/updateHap.cpp -o DEploid/updateHap.o
g++  -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1  -I/usr/share/R/include/ -IDEploid/ -IDEploid/codeCogs/ -IDEploid/random/ -IDEploid/gzstream/ -IDEploid/lasso/  -DVERSION="\"R\"" -DRBUILD -DSTRICT_R_HEADERS   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -c DEploid/utility.cpp -o DEploid/utility.o
g++  -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1  -I/usr/share/R/include/ -IDEploid/ -IDEploid/codeCogs/ -IDEploid/random/ -IDEploid/gzstream/ -IDEploid/lasso/  -DVERSION="\"R\"" -DRBUILD -DSTRICT_R_HEADERS   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -c DEploid/variantIndex.cpp -o DEploid/variantIndex.o
g++  -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1  -I/usr/share/R/include/ -IDEploid/ -IDEploid/codeCogs/ -IDEploid/random/ -IDEploid/gzstream/ -IDEploid/lasso/  -DVERSION="\"R\"" -DRBUILD -DSTRICT_R_HEADERS   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -c DEploid/vcfReader.cpp -o DEploid/vcfReader.o
g++  -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1  -I/usr/share/R/include/ -IDEploid/ -IDEploid/codeCogs/ -IDEploid/random/ -IDEploid/gzstream/ -IDEploid/lasso/  -DVERSION="\"R\"" -DRBUILD -DSTRICT_R_HEADERS   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -c DEploid/gzstream/gzstream.cpp -o DEploid/gzstream/gzstream.o
g++  -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1  -I/usr/share/R/include/ -IDEploid/ -IDEploid/codeCogs/ -IDEploid/random/ -IDEploid/gzstream/ -IDEploid/lasso/  -DVERSION="\"R\"" -DRBUILD -DSTRICT_R_HEADERS   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -c DEploid/random/fastfunc.cpp -o DEploid/random/fastfunc.o
In file included from DEploid/random/fastfunc.cpp:26:
DEploid/random/fastfunc.hpp: In member function 'double FastFunc::fastexp_up(double)':
DEploid/random/fastfunc.hpp:69:5: error: 'int64_t' does not name a type
   69 |     int64_t i;
      |     ^~~~~~~
DEploid/random/fastfunc.hpp:32:1: note: 'int64_t' is defined in header '<cstdint>'; did you forget to '#include <cstdint>'?
   31 | #include <vector>
  +++ |+#include <cstdint>
   32 | 
DEploid/random/fastfunc.hpp:71:5: error: 'union FastFunc::fastexp_up(double)::<unnamed>' has no member named 'i'
   71 |   n.i = (((long long)(EXP_A*y)) + (1072693248 - EXP_C_UP)) << 32;
      |     ^
DEploid/random/fastfunc.hpp: In member function 'double FastFunc::fastexp_lo(double)':
DEploid/random/fastfunc.hpp:80:5: error: 'int64_t' does not name a type
   80 |     int64_t i;
      |     ^~~~~~~
DEploid/random/fastfunc.hpp:80:5: note: 'int64_t' is defined in header '<cstdint>'; did you forget to '#include <cstdint>'?
DEploid/random/fastfunc.hpp:82:5: error: 'union FastFunc::fastexp_lo(double)::<unnamed>' has no member named 'i'
   82 |   n.i = (((long long)(EXP_A*y)) + (1072693248 - EXP_C_LO)) << 32;
      |     ^
DEploid/random/fastfunc.hpp: In member function 'double FastFunc::fastlog(double)':
DEploid/random/fastfunc.hpp:89:3: error: 'int64_t' was not declared in this scope
   89 |   int64_t* yint = reinterpret_cast<int64_t*>(&x);
      |   ^~~~~~~
DEploid/random/fastfunc.hpp:89:3: note: 'int64_t' is defined in header '<cstdint>'; did you forget to '#include <cstdint>'?
DEploid/random/fastfunc.hpp:89:12: error: 'yint' was not declared in this scope; did you mean 'rint'?
   89 |   int64_t* yint = reinterpret_cast<int64_t*>(&x);
      |            ^~~~
      |            rint
DEploid/random/fastfunc.hpp:89:36: error: 'int64_t' does not name a type
   89 |   int64_t* yint = reinterpret_cast<int64_t*>(&x);
      |                                    ^~~~~~~
DEploid/random/fastfunc.hpp:89:36: note: 'int64_t' is defined in header '<cstdint>'; did you forget to '#include <cstdint>'?
DEploid/random/fastfunc.hpp:89:43: error: expected '>' before '*' token
   89 |   int64_t* yint = reinterpret_cast<int64_t*>(&x);
      |                                           ^
DEploid/random/fastfunc.hpp:89:43: error: expected '(' before '*' token
   89 |   int64_t* yint = reinterpret_cast<int64_t*>(&x);
      |                                           ^
      |                                           (
DEploid/random/fastfunc.hpp:89:44: error: expected primary-expression before '>' token
   89 |   int64_t* yint = reinterpret_cast<int64_t*>(&x);
      |                                            ^
DEploid/random/fastfunc.hpp:89:49: error: expected ')' before ';' token
   89 |   int64_t* yint = reinterpret_cast<int64_t*>(&x);
      |                                                 ^
      |                                                 )
make: *** [D:/RCompile/recent/R/etc/x64/Makeconf:297: DEploid/random/fastfunc.o] Error 1
ERROR: compilation failed for package 'DEploid'
* removing 'd:/RCompile/CRANincoming/R-devel/lib/DEploid'