* using log directory 'd:/RCompile/CRANincoming/R-devel/DEploid.Rcheck'
* using R Under development (unstable) (2024-10-11 r87226 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'DEploid/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'DEploid' version '0.5.4'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [14s] NOTE
Maintainer: 'Joe Zhu <sha.joe.zhu@gmail.com>'

New submission

Package was archived on CRAN

Possibly misspelled words in DESCRIPTION:
  Deconvolute (3:8)
  MCMC (17:3)
  Plasmodium (21:26)
  deconvoluting (23:48)
  falciparum (21:37)
  haplotype (17:64)
  haplotypes (23:68)

CRAN repository db overrides:
  X-CRAN-Comment: Archived on 2021-08-01 as check problems were not
    corrected despite multiple reminders.

Found the following (possibly) invalid URLs:
  URL: http://www.biorxiv.org/content/early/2017/01/10/099499 (moved to https://www.biorxiv.org/content/10.1101/099499v1)
    From: inst/CITATION
    Status: 301
    Message: Moved Permanently
  URL: https://codecov.io/gh/DEploid-dev/DEploid-r (moved to https://app.codecov.io/gh/DEploid-dev/DEploid-r)
    From: README.md
    Status: 301
    Message: Moved Permanently
  URL: https://travis-ci.org/DEploid-dev/DEploid-r (moved to https://app.travis-ci.com/DEploid-dev/DEploid-r)
    From: README.md
    Status: 301
    Message: Moved Permanently
  URL: https://www.biorxiv.org/content/early/2018/08/09/387266 (moved to https://www.biorxiv.org/content/10.1101/387266v1)
    From: inst/doc/dEploid-Arguments.html
    Status: 301
    Message: Moved Permanently
  URL: https://www.biorxiv.org/content/early/2018/08/09/387266.full.pdf (moved to https://www.biorxiv.org/content/biorxiv/early/2018/08/09/387266.full.pdf)
    From: inst/doc/dEploid-Arguments.html
    Status: 301
    Message: Moved Permanently
For content that is 'Moved Permanently', please change http to https,
add trailing slashes, or replace the old by the new URL.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking serialization versions ... OK
* checking whether package 'DEploid' can be installed ... ERROR
Installation failed.
See 'd:/RCompile/CRANincoming/R-devel/DEploid.Rcheck/00install.out' for details.
* DONE
Status: 1 ERROR, 1 NOTE