Package check result: OK

Changes to worse in reverse depends:

Package: BIEN
Check: re-building of vignette outputs
New result: ERROR
  Error(s) in re-building vignettes:
    ...
  --- re-building ‘BIEN.Rmd’ using rmarkdown
  [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
  --- finished re-building ‘BIEN.Rmd’
  
  --- re-building ‘BIEN_tutorial.Rmd’ using rmarkdown
  
  Quitting from BIEN_tutorial.Rmd:101-105 [xs-occurrences]
  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  <error/rlang_error>
  Error in `postgresqlNewConnection()`:
  ! RPosgreSQL error: could not connect public_bien@vegbiendev.nceas.ucsb.edu:5432 on dbname "public_vegbien": connection to server at "vegbiendev.nceas.ucsb.edu" (128.111.85.31), port 5432 failed: Connection timed out
  	Is the server running on that host and accepting TCP/IP connections?
  ---
  Backtrace:
      ▆
   1. └─BIEN::BIEN_occurrence_species(species = "Xanthium strumarium")
   2.   └─BIEN:::.BIEN_sql(query, ...)
   3.     ├─DBI::dbConnect(...)
   4.     └─RPostgreSQL::dbConnect(...)
   5.       └─RPostgreSQL::postgresqlNewConnection(drv, ...)
  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  
  Error: processing vignette 'BIEN_tutorial.Rmd' failed with diagnostics:
  RPosgreSQL error: could not connect public_bien@vegbiendev.nceas.ucsb.edu:5432 on dbname "public_vegbien": connection to server at "vegbiendev.nceas.ucsb.edu" (128.111.85.31), port 5432 failed: Connection timed out
  	Is the server running on that host and accepting TCP/IP connections?
  
  --- failed re-building ‘BIEN_tutorial.Rmd’
  
  SUMMARY: processing the following file failed:
    ‘BIEN_tutorial.Rmd’
  
  Error: Vignette re-building failed.
  Execution halted

Package: dittodb
Check: examples
New result: ERROR
  Running examples in ‘dittodb-Ex.R’ failed
  The error most likely occurred in:
  
  > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
  > ### Name: nycflights_sqlite
  > ### Title: An SQLite connection to a subset of nycflights13
  > ### Aliases: nycflights_sqlite
  > 
  > ### ** Examples
  > 
  > if (check_for_pkg("RSQLite", message)) {
  +   con <- nycflights_sqlite()
  + 
  +   DBI::dbGetQuery(con, "SELECT flight, tailnum, origin, dest FROM flights LIMIT 10")
  +   DBI::dbGetQuery(con, "SELECT faa, name, lat, lon, alt, tz FROM airports")
  + 
  +   DBI::dbDisconnect(con)
  + }
  Error in find_file(path) : 
    Couldn't find the file _home_hornik_tmp_CRAN_recheck_dittodb.Rcheck_dittodb_nycflights.sqlite/SELECT-c36080.R in any of the mock directories.
  Calls: <Anonymous> ... dbFetch -> dbFetch -> read_file -> source -> find_file
  Execution halted

Package: dittodb
Check: tests
New result: ERROR
    Running ‘spelling.R’ [0s/0s]
    Running ‘testthat.R’ [14s/14s]
  Running the tests in ‘tests/testthat.R’ failed.
  Complete output:
    > library(testthat)
    > test_check("dittodb")
    Loading required package: dittodb
    Loading required package: DBI
    Saving _problems/test-a-recording-9.R
    Saving _problems/test-a-recording-38.R
    Saving _problems/test-a-recording-49.R
    Saving _problems/test-connection-13.R
    There is no mock database being used.
    Saving _problems/test-dbi-sqlite-integration-2.R
    Saving _problems/test-dbplyr-integration-7.R
    There is no mock database being used.
    There is no mock database being used.
    Saving _problems/test-nycflights13-4.R
    Saving _problems/test-nycflights13-137.R
    There is no mock database being used.
    [ FAIL 10 | WARN 0 | SKIP 7 | PASS 174 ]
    
    ══ Skipped tests (7) ═══════════════════════════════════════════════════════════
    • Skipping tests that need functioning MariaDB. (1):
      'test-dbi-generic-integration.R:49:5'
    • Skipping tests that need functioning Postgres. (6):
      'test-dbi-generic-integration.R:49:5', 'test-dbi-generic-integration.R:49:5',
      'test-dbi-generic-integration.R:49:5', 'test-nycflights13.R:16:3',
      'test-nycflights13.R:57:3', 'test-nycflights13.R:97:3'
    
    ══ Failed tests ════════════════════════════════════════════════════════════════
    ── Error ('test-a-recording.R:9:3'): We can capture db interactions ────────────
    Error in `get_dbname(list(...), drv = drv)`: unused argument (drv = drv)
    Backtrace:
        ▆
     1. ├─base::suppressMessages(con <- nycflights13_create_sqlite(verbose = FALSE)) at test-a-recording.R:9:3
     2. │ └─base::withCallingHandlers(...)
     3. └─dittodb::nycflights13_create_sqlite(verbose = FALSE)
     4.   └─DBI::dbConnect(RSQLite::SQLite(), location)
     5.     ├─base::.doTrace(...)
     6.     │ └─base::eval.parent(exprObj)
     7.     │   └─base::eval(expr, p)
     8.     │     └─base::eval(expr, p)
     9.     └─base::file.path(db_mock_paths()[1], get_dbname(list(...), drv = drv))
    ── Error ('test-a-recording.R:38:3'): We can specify the path when starting capture ──
    Error in `get_dbname(list(...), drv = drv)`: unused argument (drv = drv)
    Backtrace:
        ▆
     1. ├─base::suppressMessages(con <- nycflights13_create_sqlite()) at test-a-recording.R:38:3
     2. │ └─base::withCallingHandlers(...)
     3. └─dittodb::nycflights13_create_sqlite()
     4.   └─DBI::dbConnect(RSQLite::SQLite(), location)
     5.     ├─base::.doTrace(...)
     6.     │ └─base::eval.parent(exprObj)
     7.     │   └─base::eval(expr, p)
     8.     │     └─base::eval(expr, p)
     9.     └─base::file.path(db_mock_paths()[1], get_dbname(list(...), drv = drv))
    ── Error ('test-a-recording.R:49:3'): dbGetQuery error checking ────────────────
    Error in `get_dbname(list(...), drv = drv)`: unused argument (drv = drv)
    Backtrace:
        ▆
     1. ├─base::suppressMessages(con <- nycflights13_create_sqlite(verbose = FALSE)) at test-a-recording.R:49:3
     2. │ └─base::withCallingHandlers(...)
     3. └─dittodb::nycflights13_create_sqlite(verbose = FALSE)
     4.   └─DBI::dbConnect(RSQLite::SQLite(), location)
     5.     ├─base::.doTrace(...)
     6.     │ └─base::eval.parent(exprObj)
     7.     │   └─base::eval(expr, p)
     8.     │     └─base::eval(expr, p)
     9.     └─base::file.path(db_mock_paths()[1], get_dbname(list(...), drv = drv))
    ── Error ('test-connection.R:13:7'): And that RSQLite, without anything captures ──
    Error in `get_dbname(list(...), drv = drv)`: unused argument (drv = drv)
    Backtrace:
         ▆
      1. ├─dittodb::capture_db_requests(...) at test-connection.R:11:3
      2. │ ├─dittodb::with_mock_path(path, eval(expr, where))
      3. │ │ └─base::eval.parent(expr)
      4. │ │   └─base::eval(expr, p)
      5. │ └─base::eval(expr, where)
      6. └─DBI::dbConnect(RSQLite::SQLite()) at test-connection.R:13:7
      7.   ├─base::.doTrace(...)
      8.   │ └─base::eval.parent(exprObj)
      9.   │   └─base::eval(expr, p)
     10.   │     └─base::eval(expr, p)
     11.   └─base::file.path(db_mock_paths()[1], get_dbname(list(...), drv = drv))
    ── Error ('test-dbi-sqlite-integration.R:2:1'): (code run outside of `test_that()`) ──
    Error in `find_file(path)`: Couldn't find the file _memory_/dbListTables.R in any of the mock directories.
    Backtrace:
         ▆
      1. ├─base::suppressMessages(con <- nycflights13_create_sqlite()) at test-dbi-sqlite-integration.R:2:1
      2. │ └─base::withCallingHandlers(...)
      3. └─dittodb::nycflights13_create_sqlite()
      4.   └─dittodb::nycflights13_create_sql(sqlite_con, schema = "", ...)
      5.     ├─DBI::dbListTables(con)
      6.     └─dittodb::dbListTables(con)
      7.       └─dittodb:::list_helper("dbListTables", conn, ...)
      8.         ├─dittodb:::read_file(find_file(path))
      9.         │ └─base::source(file_path, keep.source = FALSE)
     10.         └─dittodb:::find_file(path)
    ── Error ('test-dbplyr-integration.R:7:1'): (code run outside of `test_that()`) ──
    Error in `find_file(path)`: Couldn't find the file _home_hornik_tmp_scratch_RtmpteZM8D_dbplyr_integration/dbListTables.R in any of the mock directories.
    Backtrace:
         ▆
      1. ├─base::suppressMessages(con <- nycflights13_create_sqlite(temp_path)) at test-dbplyr-integration.R:7:1
      2. │ └─base::withCallingHandlers(...)
      3. └─dittodb::nycflights13_create_sqlite(temp_path)
      4.   └─dittodb::nycflights13_create_sql(sqlite_con, schema = "", ...)
      5.     ├─DBI::dbListTables(con)
      6.     └─dittodb::dbListTables(con)
      7.       └─dittodb:::list_helper("dbListTables", conn, ...)
      8.         ├─dittodb:::read_file(find_file(path))
      9.         │ └─base::source(file_path, keep.source = FALSE)
     10.         └─dittodb:::find_file(path)
    ── Error ('test-nycflights13.R:4:3'): nycflights sqlite can be created ─────────
    Error in `find_file(path)`: Couldn't find the file _memory_/dbListTables.R in any of the mock directories.
    Backtrace:
         ▆
      1. ├─base::suppressMessages(con <- nycflights13_create_sqlite()) at test-nycflights13.R:4:3
      2. │ └─base::withCallingHandlers(...)
      3. └─dittodb::nycflights13_create_sqlite()
      4.   └─dittodb::nycflights13_create_sql(sqlite_con, schema = "", ...)
      5.     ├─DBI::dbListTables(con)
      6.     └─dittodb::dbListTables(con)
      7.       └─dittodb:::list_helper("dbListTables", conn, ...)
      8.         ├─dittodb:::read_file(find_file(path))
      9.         │ └─base::source(file_path, keep.source = FALSE)
     10.         └─dittodb:::find_file(path)
    ── Error ('test-nycflights13.R:137:3'): nycflights_db() test databes ───────────
    Error in `find_file(path)`: Couldn't find the file _home_hornik_tmp_CRAN_recheck_dittodb.Rcheck_dittodb_nycflights.sqlite/SELECT-4013df.R in any of the mock directories.
    Backtrace:
        ▆
     1. ├─DBI::dbGetQuery(con, "SELECT * FROM flights LIMIT 10;") at test-nycflights13.R:137:3
     2. └─DBI::dbGetQuery(con, "SELECT * FROM flights LIMIT 10;")
     3.   └─DBI (local) .local(conn, statement, ...)
     4.     ├─DBI::dbFetch(rs, n = n, ...)
     5.     └─dittodb::dbFetch(rs, n = n, ...)
     6.       ├─dittodb:::read_file(find_file(path))
     7.       │ └─base::source(file_path, keep.source = FALSE)
     8.       └─dittodb:::find_file(path)
    ── Error ('test-verbosity.R:9:7'): level 1 includes statements and hashes ──────
    Error in `get_dbname(list(...), drv = drv)`: unused argument (drv = drv)
    Backtrace:
         ▆
      1. ├─withr::with_options(...) at test-verbosity.R:4:5
      2. │ └─base::force(code)
      3. ├─base::suppressMessages(con <- nycflights13_create_sqlite()) at test-verbosity.R:9:7
      4. │ └─base::withCallingHandlers(...)
      5. └─dittodb::nycflights13_create_sqlite()
      6.   └─DBI::dbConnect(RSQLite::SQLite(), location)
      7.     ├─base::.doTrace(...)
      8.     │ └─base::eval.parent(exprObj)
      9.     │   └─base::eval(expr, p)
     10.     │     └─base::eval(expr, p)
     11.     └─base::file.path(db_mock_paths()[1], get_dbname(list(...), drv = drv))
    ── Error ('test-verbosity.R:59:11'): level 2 includes more ─────────────────────
    Error in `get_dbname(list(...), drv = drv)`: unused argument (drv = drv)
    Backtrace:
         ▆
      1. ├─withr::with_options(...) at test-verbosity.R:52:5
      2. │ └─base::force(code)
      3. ├─base::suppressMessages(...) at test-verbosity.R:56:7
      4. │ └─base::withCallingHandlers(...)
      5. ├─testthat::expect_message(...)
      6. │ └─testthat:::expect_condition_matching_(...)
      7. │   └─testthat:::quasi_capture(...)
      8. │     ├─testthat (local) .capture(...)
      9. │     │ └─base::withCallingHandlers(...)
     10. │     └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
     11. └─dittodb::nycflights13_create_sqlite() at test-verbosity.R:59:11
     12.   └─DBI::dbConnect(RSQLite::SQLite(), location)
     13.     ├─base::.doTrace(...)
     14.     │ └─base::eval.parent(exprObj)
     15.     │   └─base::eval(expr, p)
     16.     │     └─base::eval(expr, p)
     17.     └─base::file.path(db_mock_paths()[1], get_dbname(list(...), drv = drv))
    
    [ FAIL 10 | WARN 0 | SKIP 7 | PASS 174 ]
    Error:
    ! Test failures.
    Execution halted

Package: OpenRange
Check: re-building of vignette outputs
New result: ERROR
  Error(s) in re-building vignettes:
    ...
  --- re-building ‘OpenRange.rmd’ using rmarkdown
  
  Quitting from OpenRange.rmd:22-31 [load species]
  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  <error/rlang_error>
  Error in `postgresqlNewConnection()`:
  ! RPosgreSQL error: could not connect public_bien@vegbiendev.nceas.ucsb.edu:5432 on dbname "vegbien": connection to server at "vegbiendev.nceas.ucsb.edu" (128.111.85.31), port 5432 failed: Connection timed out
  	Is the server running on that host and accepting TCP/IP connections?
  ---
  Backtrace:
      ▆
   1. └─OpenRange::OpenRange_load_species(species = "Pinus contorta")
   2.   └─OpenRange:::ranges_sql(query)
   3.     ├─DBI::dbConnect(...)
   4.     └─DBI::dbConnect(...)
   5.       └─RPostgreSQL::postgresqlNewConnection(drv, ...)
  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  
  Error: processing vignette 'OpenRange.rmd' failed with diagnostics:
  RPosgreSQL error: could not connect public_bien@vegbiendev.nceas.ucsb.edu:5432 on dbname "vegbien": connection to server at "vegbiendev.nceas.ucsb.edu" (128.111.85.31), port 5432 failed: Connection timed out
  	Is the server running on that host and accepting TCP/IP connections?
  
  --- failed re-building ‘OpenRange.rmd’
  
  SUMMARY: processing the following file failed:
    ‘OpenRange.rmd’
  
  Error: Vignette re-building failed.
  Execution halted