R Under development (unstable) (2026-02-26 r89489 ucrt) -- "Unsuffered Consequences" Copyright (C) 2026 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > test_check("Cyclops") Loading required package: Cyclops Sparseness = 52.175 % Sorting outcomes by rowId Sorting covariates by covariateId and rowId Sorting outcomes by rowId Sorting covariates by covariateId and rowId Sparseness = 52.175 % Sorting outcomes by rowId Sorting covariates by covariateId and rowId Sorting outcomes by rowId Sorting covariates by covariateId and rowId Sparseness = 52.175 % Sorting outcomes by stratumId, time (descending), y and rowId Sorting covariates by covariateId, stratumId, time (descending), y, and rowId Sorting outcomes by stratumId, time (descending), y and rowId Sorting covariates by covariateId, stratumId, time (descending), y, and rowId Sorting outcomes by stratumId and rowId Sorting covariates by covariateId, stratumId, and rowId Sparseness = 98.99 % Sorting covariates by covariateId and rowId Using cross-validation selector type byRow Performing 10-fold cross-validation [seed = 1772232136] with data partitions of sizes 100 100 100 100 100 100 100 100 100 100 Using 1 thread(s) Starting var = 0.0101 (default) Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #1 Rep #1 pred log like = -42.2824 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #2 Rep #1 pred log like = -30.1617 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #3 Rep #1 pred log like = -35.2858 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #4 Rep #1 pred log like = -33.5661 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #5 Rep #1 pred log like = -33.5661 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #6 Rep #1 pred log like = -33.5661 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #7 Rep #1 pred log like = -25.1406 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #8 Rep #1 pred log like = -21.8491 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #9 Rep #1 pred log like = -28.4767 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #10 Rep #1 pred log like = -40.5153 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #1 Rep #2 pred log like = -33.5661 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #2 Rep #2 pred log like = -31.8582 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #3 Rep #2 pred log like = -47.6568 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #4 Rep #2 pred log like = -44.0616 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #5 Rep #2 pred log like = -26.803 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #6 Rep #2 pred log like = -37.0171 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #7 Rep #2 pred log like = -20.2198 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #8 Rep #2 pred log like = -33.5661 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #9 Rep #2 pred log like = -23.4893 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #10 Rep #2 pred log like = -26.803 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #1 Rep #3 pred log like = -44.0616 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #2 Rep #3 pred log like = -30.1617 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #3 Rep #3 pred log like = -31.8582 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #4 Rep #3 pred log like = -38.7602 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #5 Rep #3 pred log like = -30.1617 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #6 Rep #3 pred log like = -31.8582 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #7 Rep #3 pred log like = -33.5661 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #8 Rep #3 pred log like = -28.4767 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #9 Rep #3 pred log like = -40.5153 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #10 Rep #3 pred log like = -15.397 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #1 Rep #4 pred log like = -33.5661 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #2 Rep #4 pred log like = -21.8491 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #3 Rep #4 pred log like = -23.4893 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #4 Rep #4 pred log like = -49.4731 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #5 Rep #4 pred log like = -28.4767 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #6 Rep #4 pred log like = -37.0171 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #7 Rep #4 pred log like = -33.5661 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #8 Rep #4 pred log like = -30.1617 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #9 Rep #4 pred log like = -38.7602 Running at Laplace(14.072) None Grid-point #1 at 0.0101 Fold #10 Rep #4 pred log like = -28.4767 AvgPred = -32.4776 with stdev = 7.39066 Completed at 0.0101 Next point at 0.101 with value 0 and continue = 1 search[ 0.0101 ] = -32.4776(7.39066) Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #1 Rep #1 pred log like = -42.2824 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #2 Rep #1 pred log like = -30.1617 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #3 Rep #1 pred log like = -35.2858 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #4 Rep #1 pred log like = -33.5661 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #5 Rep #1 pred log like = -33.5661 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #6 Rep #1 pred log like = -33.5661 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #7 Rep #1 pred log like = -25.1488 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #8 Rep #1 pred log like = -21.8491 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #9 Rep #1 pred log like = -28.4767 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #10 Rep #1 pred log like = -40.5153 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #1 Rep #2 pred log like = -33.5661 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #2 Rep #2 pred log like = -31.8582 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #3 Rep #2 pred log like = -47.6568 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #4 Rep #2 pred log like = -44.0616 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #5 Rep #2 pred log like = -26.803 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #6 Rep #2 pred log like = -37.0171 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #7 Rep #2 pred log like = -20.2198 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #8 Rep #2 pred log like = -33.5661 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #9 Rep #2 pred log like = -23.4893 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #10 Rep #2 pred log like = -26.803 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #1 Rep #3 pred log like = -44.0616 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #2 Rep #3 pred log like = -30.1617 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #3 Rep #3 pred log like = -31.8582 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #4 Rep #3 pred log like = -38.7602 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #5 Rep #3 pred log like = -30.1617 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #6 Rep #3 pred log like = -31.8582 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #7 Rep #3 pred log like = -33.5661 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #8 Rep #3 pred log like = -28.4767 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #9 Rep #3 pred log like = -40.5153 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #10 Rep #3 pred log like = -15.397 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #1 Rep #4 pred log like = -33.5661 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #2 Rep #4 pred log like = -21.8491 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #3 Rep #4 pred log like = -23.4964 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #4 Rep #4 pred log like = -49.4731 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #5 Rep #4 pred log like = -28.4767 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #6 Rep #4 pred log like = -37.0171 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #7 Rep #4 pred log like = -33.5661 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #8 Rep #4 pred log like = -30.1617 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #9 Rep #4 pred log like = -38.7602 Running at Laplace(4.44994) None Grid-point #2 at 0.101 Fold #10 Rep #4 pred log like = -28.4767 AvgPred = -32.478 with stdev = 7.39024 Completed at 0.101 Next point at 0.00101 with value 0 and continue = 1 search[ 0.0101 ] = -32.4776(7.39066) search[ 0.101 ] = -32.478(7.39024) Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #1 Rep #1 pred log like = -42.2824 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #2 Rep #1 pred log like = -30.1617 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #3 Rep #1 pred log like = -35.2858 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #4 Rep #1 pred log like = -33.5661 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #5 Rep #1 pred log like = -33.5661 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #6 Rep #1 pred log like = -33.5661 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #7 Rep #1 pred log like = -25.1406 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #8 Rep #1 pred log like = -21.8491 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #9 Rep #1 pred log like = -28.4767 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #10 Rep #1 pred log like = -40.5153 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #1 Rep #2 pred log like = -33.5661 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #2 Rep #2 pred log like = -31.8582 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #3 Rep #2 pred log like = -47.6568 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #4 Rep #2 pred log like = -44.0616 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #5 Rep #2 pred log like = -26.803 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #6 Rep #2 pred log like = -37.0171 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #7 Rep #2 pred log like = -20.2198 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #8 Rep #2 pred log like = -33.5661 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #9 Rep #2 pred log like = -23.4893 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #10 Rep #2 pred log like = -26.803 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #1 Rep #3 pred log like = -44.0616 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #2 Rep #3 pred log like = -30.1617 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #3 Rep #3 pred log like = -31.8582 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #4 Rep #3 pred log like = -38.7602 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #5 Rep #3 pred log like = -30.1617 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #6 Rep #3 pred log like = -31.8582 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #7 Rep #3 pred log like = -33.5661 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #8 Rep #3 pred log like = -28.4767 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #9 Rep #3 pred log like = -40.5153 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #10 Rep #3 pred log like = -15.397 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #1 Rep #4 pred log like = -33.5661 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #2 Rep #4 pred log like = -21.8491 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #3 Rep #4 pred log like = -23.4893 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #4 Rep #4 pred log like = -49.4731 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #5 Rep #4 pred log like = -28.4767 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #6 Rep #4 pred log like = -37.0171 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #7 Rep #4 pred log like = -33.5661 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #8 Rep #4 pred log like = -30.1617 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #9 Rep #4 pred log like = -38.7602 Running at Laplace(44.4994) None Grid-point #3 at 0.00101 Fold #10 Rep #4 pred log like = -28.4767 AvgPred = -32.4776 with stdev = 7.39066 Completed at 0.00101 Next point at 0.0031939 with value -32.4776 and continue = 0 search[ 0.00101 ] = -32.4776(7.39066) search[ 0.0101 ] = -32.4776(7.39066) search[ 0.101 ] = -32.478(7.39024) Maximum predicted log likelihood (-32.4776) estimated at: 0.0031939 (variance) 25.0239 (lambda) Fitting model at optimal hyperparameter Using prior: Laplace(25.0239) None Sorting outcomes by stratumId and rowId Sorting covariates by covariateId, stratumId, and rowId Sorting outcomes by stratumId, time (descending), y and rowId Sorting covariates by covariateId, stratumId, time (descending), y, and rowId Sorting outcomes by stratumId, time (descending), y and rowId Sorting covariates by covariateId, stratumId, time (descending), y, and rowId Sorting outcomes by stratumId, time (descending), y and rowId Sorting covariates by covariateId, stratumId, time (descending), y, and rowId Sparseness = 75.605 % Sorting covariates by covariateId and rowId Sparseness = 98.96 % Sorting covariates by covariateId and rowId Sorting covariates by covariateId and rowId Sorting covariates by covariateId and rowId Sparseness = 98.96 % Sorting outcomes by rowId Sorting covariates by covariateId and rowId Sparseness = 76.15 % Sorting covariates by covariateId and rowId Sparseness = 75.695 % Sorting covariates by covariateId and rowId Sparseness = 75.9 % Sorting covariates by covariateId and rowId Sparseness = 75.3 % Sorting covariates by covariateId and rowId Sparseness = 13.23 % Sorting outcomes by stratumId, time (descending), y and rowId Sorting covariates by covariateId, stratumId, time (descending), y, and rowId Sparseness = 76.4 % Sorting covariates by covariateId and rowId Analysis took 0.0399 secs ( 0.00137 ) Fitting model using clogit Analysis took 0.129 secs Sparseness = 76.4 % Sorting outcomes by stratumId, time (descending), y and rowId Sorting covariates by covariateId, stratumId, time (descending), y, and rowId Sorting outcomes by stratumId, time (descending), y and rowId Sorting covariates by covariateId, stratumId, time (descending), y, and rowId Sorting outcomes by stratumId, time (descending), y and rowId Sorting covariates by covariateId, stratumId, time (descending), y, and rowId Analysis took 0.0138 secs ( 0.000299 ) Fitting model using coxpht Analysis took 0.00904 secs Using prior: None log post: -153.562 (-153.562 + 0) (iter:1, conv: 1.49516) log post: -140.336 (-140.336 + 0) (iter:2, conv: 0.417984) log post: -132.01 (-132.01 + 0) (iter:3, conv: 0.261069) log post: -126.375 (-126.375 + 0) (iter:4, conv: 0.183922) log post: -122.375 (-122.375 + 0) (iter:5, conv: 0.136891) log post: -119.439 (-119.439 + 0) (iter:6, conv: 0.106878) log post: -117.228 (-117.228 + 0) (iter:7, conv: 0.0862994) log post: -115.53 (-115.53 + 0) (iter:8, conv: 0.071395) log post: -114.206 (-114.206 + 0) (iter:9, conv: 0.060154) log post: -113.159 (-113.159 + 0) (iter:10, conv: 0.051408) log post: -112.323 (-112.323 + 0) (iter:11, conv: 0.0444337) log post: -111.649 (-111.649 + 0) (iter:12, conv: 0.0387604) log post: -111.102 (-111.102 + 0) (iter:13, conv: 0.0340695) log post: -110.655 (-110.655 + 0) (iter:14, conv: 0.0301375) log post: -110.288 (-110.288 + 0) (iter:15, conv: 0.0268034) log post: -109.985 (-109.985 + 0) (iter:16, conv: 0.0239483) log post: -109.733 (-109.733 + 0) (iter:17, conv: 0.0214827) log post: -109.524 (-109.524 + 0) (iter:18, conv: 0.0193378) log post: -109.349 (-109.349 + 0) (iter:19, conv: 0.0174597) log post: -109.202 (-109.202 + 0) (iter:20, conv: 0.0158061) log post: -109.079 (-109.079 + 0) (iter:21, conv: 0.0143429) log post: -108.976 (-108.976 + 0) (iter:22, conv: 0.0130423) log post: -108.889 (-108.889 + 0) (iter:23, conv: 0.0118819) log post: -108.815 (-108.815 + 0) (iter:24, conv: 0.0108428) log post: -108.752 (-108.752 + 0) (iter:25, conv: 0.00990905) log post: -108.7 (-108.7 + 0) (iter:26, conv: 0.00906454) log post: -108.655 (-108.655 + 0) (iter:27, conv: 0.00830244) log post: -108.616 (-108.616 + 0) (iter:28, conv: 0.00761308) log post: -108.584 (-108.584 + 0) (iter:29, conv: 0.00698817) log post: -108.556 (-108.556 + 0) (iter:30, conv: 0.00642058) log post: -108.533 (-108.533 + 0) (iter:31, conv: 0.00590412) log post: -108.512 (-108.512 + 0) (iter:32, conv: 0.00543344) log post: -108.495 (-108.495 + 0) (iter:33, conv: 0.00500383) log post: -108.48 (-108.48 + 0) (iter:34, conv: 0.00461118) log post: -108.468 (-108.468 + 0) (iter:35, conv: 0.00425187) log post: -108.457 (-108.457 + 0) (iter:36, conv: 0.00392269) log post: -108.448 (-108.448 + 0) (iter:37, conv: 0.00362081) log post: -108.44 (-108.44 + 0) (iter:38, conv: 0.00334369) log post: -108.433 (-108.433 + 0) (iter:39, conv: 0.00308909) log post: -108.427 (-108.427 + 0) (iter:40, conv: 0.00285498) log post: -108.422 (-108.422 + 0) (iter:41, conv: 0.00263955) log post: -108.418 (-108.418 + 0) (iter:42, conv: 0.00244118) log post: -108.415 (-108.415 + 0) (iter:43, conv: 0.0022584) log post: -108.411 (-108.411 + 0) (iter:44, conv: 0.00208989) log post: -108.409 (-108.409 + 0) (iter:45, conv: 0.00193445) log post: -108.406 (-108.406 + 0) (iter:46, conv: 0.001791) log post: -108.404 (-108.404 + 0) (iter:47, conv: 0.00165855) log post: -108.403 (-108.403 + 0) (iter:48, conv: 0.00153621) log post: -108.401 (-108.401 + 0) (iter:49, conv: 0.00142316) log post: -108.4 (-108.4 + 0) (iter:50, conv: 0.00131866) log post: -108.399 (-108.399 + 0) (iter:51, conv: 0.00122202) log post: -108.398 (-108.398 + 0) (iter:52, conv: 0.00113264) log post: -108.397 (-108.397 + 0) (iter:53, conv: 0.00104994) log post: -108.396 (-108.396 + 0) (iter:54, conv: 0.000973398) log post: -108.396 (-108.396 + 0) (iter:55, conv: 0.000902544) log post: -108.395 (-108.395 + 0) (iter:56, conv: 0.000836938) log post: -108.395 (-108.395 + 0) (iter:57, conv: 0.00077618) log post: -108.394 (-108.394 + 0) (iter:58, conv: 0.0007199) log post: -108.394 (-108.394 + 0) (iter:59, conv: 0.000667758) log post: -108.394 (-108.394 + 0) (iter:60, conv: 0.000619443) log post: -108.393 (-108.393 + 0) (iter:61, conv: 0.000574666) log post: -108.393 (-108.393 + 0) (iter:62, conv: 0.000533163) log post: -108.393 (-108.393 + 0) (iter:63, conv: 0.000494688) log post: -108.393 (-108.393 + 0) (iter:64, conv: 0.000459018) log post: -108.393 (-108.393 + 0) (iter:65, conv: 0.000425942) log post: -108.393 (-108.393 + 0) (iter:66, conv: 0.000395271) log post: -108.393 (-108.393 + 0) (iter:67, conv: 0.000366825) log post: -108.393 (-108.393 + 0) (iter:68, conv: 0.000340441) log post: -108.392 (-108.392 + 0) (iter:69, conv: 0.000315968) log post: -108.392 (-108.392 + 0) (iter:70, conv: 0.000293265) log post: -108.392 (-108.392 + 0) (iter:71, conv: 0.000272203) log post: -108.392 (-108.392 + 0) (iter:72, conv: 0.000252661) log post: -108.392 (-108.392 + 0) (iter:73, conv: 0.00023453) log post: -108.392 (-108.392 + 0) (iter:74, conv: 0.000217706) log post: -108.392 (-108.392 + 0) (iter:75, conv: 0.000202094) log post: -108.392 (-108.392 + 0) (iter:76, conv: 0.000187606) log post: -108.392 (-108.392 + 0) (iter:77, conv: 0.00017416) log post: -108.392 (-108.392 + 0) (iter:78, conv: 0.000161682) log post: -108.392 (-108.392 + 0) (iter:79, conv: 0.000150101) log post: -108.392 (-108.392 + 0) (iter:80, conv: 0.000139351) log post: -108.392 (-108.392 + 0) (iter:81, conv: 0.000129374) log post: -108.392 (-108.392 + 0) (iter:82, conv: 0.000120112) log post: -108.392 (-108.392 + 0) (iter:83, conv: 0.000111516) log post: -108.392 (-108.392 + 0) (iter:84, conv: 0.000103536) log post: -108.392 (-108.392 + 0) (iter:85, conv: 9.6128e-05) log post: -108.392 (-108.392 + 0) (iter:86, conv: 8.92512e-05) log post: -108.392 (-108.392 + 0) (iter:87, conv: 8.28673e-05) log post: -108.392 (-108.392 + 0) (iter:88, conv: 7.69408e-05) log post: -108.392 (-108.392 + 0) (iter:89, conv: 7.14387e-05) log post: -108.392 (-108.392 + 0) (iter:90, conv: 6.63307e-05) log post: -108.392 (-108.392 + 0) (iter:91, conv: 6.15884e-05) log post: -108.392 (-108.392 + 0) (iter:92, conv: 5.71856e-05) log post: -108.392 (-108.392 + 0) (iter:93, conv: 5.30979e-05) log post: -108.392 (-108.392 + 0) (iter:94, conv: 4.93026e-05) log post: -108.392 (-108.392 + 0) (iter:95, conv: 4.5779e-05) log post: -108.392 (-108.392 + 0) (iter:96, conv: 4.25074e-05) log post: -108.392 (-108.392 + 0) (iter:97, conv: 3.94698e-05) log post: -108.392 (-108.392 + 0) (iter:98, conv: 3.66494e-05) log post: -108.392 (-108.392 + 0) (iter:99, conv: 3.40307e-05) log post: -108.392 (-108.392 + 0) (iter:100, conv: 3.15993e-05) log post: -108.392 (-108.392 + 0) (iter:101, conv: 2.93417e-05) log post: -108.392 (-108.392 + 0) (iter:102, conv: 2.72454e-05) log post: -108.392 (-108.392 + 0) (iter:103, conv: 2.5299e-05) log post: -108.392 (-108.392 + 0) (iter:104, conv: 2.34918e-05) log post: -108.392 (-108.392 + 0) (iter:105, conv: 2.18137e-05) log post: -108.392 (-108.392 + 0) (iter:106, conv: 2.02555e-05) log post: -108.392 (-108.392 + 0) (iter:107, conv: 1.88087e-05) log post: -108.392 (-108.392 + 0) (iter:108, conv: 1.74652e-05) log post: -108.392 (-108.392 + 0) (iter:109, conv: 1.62178e-05) log post: -108.392 (-108.392 + 0) (iter:110, conv: 1.50595e-05) log post: -108.392 (-108.392 + 0) (iter:111, conv: 1.39839e-05) log post: -108.392 (-108.392 + 0) (iter:112, conv: 1.29852e-05) log post: -108.392 (-108.392 + 0) (iter:113, conv: 1.20578e-05) log post: -108.392 (-108.392 + 0) (iter:114, conv: 1.11967e-05) log post: -108.392 (-108.392 + 0) (iter:115, conv: 1.0397e-05) log post: -108.392 (-108.392 + 0) (iter:116, conv: 9.65454e-06) log post: -108.392 (-108.392 + 0) (iter:117, conv: 8.96507e-06) log post: -108.392 (-108.392 + 0) (iter:118, conv: 8.32486e-06) log post: -108.392 (-108.392 + 0) (iter:119, conv: 7.73036e-06) log post: -108.392 (-108.392 + 0) (iter:120, conv: 7.17833e-06) log post: -108.392 (-108.392 + 0) (iter:121, conv: 6.66573e-06) log post: -108.392 (-108.392 + 0) (iter:122, conv: 6.18973e-06) log post: -108.392 (-108.392 + 0) (iter:123, conv: 5.74773e-06) log post: -108.392 (-108.392 + 0) (iter:124, conv: 5.3373e-06) log post: -108.392 (-108.392 + 0) (iter:125, conv: 4.95617e-06) log post: -108.392 (-108.392 + 0) (iter:126, conv: 4.60227e-06) log post: -108.392 (-108.392 + 0) (iter:127, conv: 4.27364e-06) log post: -108.392 (-108.392 + 0) (iter:128, conv: 3.96847e-06) log post: -108.392 (-108.392 + 0) (iter:129, conv: 3.6851e-06) log post: -108.392 (-108.392 + 0) (iter:130, conv: 3.42197e-06) log post: -108.392 (-108.392 + 0) (iter:131, conv: 3.17762e-06) log post: -108.392 (-108.392 + 0) (iter:132, conv: 2.95073e-06) log post: -108.392 (-108.392 + 0) (iter:133, conv: 2.74003e-06) log post: -108.392 (-108.392 + 0) (iter:134, conv: 2.54439e-06) log post: -108.392 (-108.392 + 0) (iter:135, conv: 2.36271e-06) log post: -108.392 (-108.392 + 0) (iter:136, conv: 2.194e-06) log post: -108.392 (-108.392 + 0) (iter:137, conv: 2.03734e-06) log post: -108.392 (-108.392 + 0) (iter:138, conv: 1.89187e-06) log post: -108.392 (-108.392 + 0) (iter:139, conv: 1.75679e-06) log post: -108.392 (-108.392 + 0) (iter:140, conv: 1.63135e-06) log post: -108.392 (-108.392 + 0) (iter:141, conv: 1.51487e-06) log post: -108.392 (-108.392 + 0) (iter:142, conv: 1.4067e-06) log post: -108.392 (-108.392 + 0) (iter:143, conv: 1.30626e-06) log post: -108.392 (-108.392 + 0) (iter:144, conv: 1.21299e-06) log post: -108.392 (-108.392 + 0) (iter:145, conv: 1.12638e-06) log post: -108.392 (-108.392 + 0) (iter:146, conv: 1.04596e-06) log post: -108.392 (-108.392 + 0) (iter:147, conv: 9.71275e-07) Reached convergence criterion Using prior: Laplace(1.41421) None KKT Swindle count 1, activeSet size = 1 update time: 3.14e-05 in 1 iterations. Inactive set violations: 1 KKT Swindle count 2, activeSet size = 2 update time: 0.0053916 in 134 iterations. Sparseness = 99.012 % Sorting outcomes by stratumId, time (descending), y and rowId Sorting covariates by covariateId, stratumId, time (descending), y, and rowId Sorting covariates by covariateId, stratumId, time (descending), y, and rowId Sorting covariates by covariateId, stratumId, time (descending), y, and rowId Generating censoring weights Generating censoring weights Sorting outcomes by stratumId, time (descending), y and rowId Sorting covariates by covariateId, stratumId, time (descending), y, and rowId Sorting outcomes by stratumId, time (descending), y and rowId Sorting covariates by covariateId, stratumId, time (descending), y, and rowId Using cross-validation selector type byRow Performing 10-fold cross-validation [seed = 1772232147] with data partitions of sizes 1 1 1 1 1 1 1 1 1 0 Using 1 thread(s) Starting var = 0.333333 (default) Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #1 Rep #1 pred log like = 112.869 Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #2 Rep #1 pred log like = 24.9457 Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #3 Rep #1 pred log like = 79.8291 Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #4 Rep #1 pred log like = 106.597 Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #5 Rep #1 pred log like = 14.674 Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #6 Rep #1 pred log like = 33.625 Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #7 Rep #1 pred log like = 59.4894 Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #8 Rep #1 pred log like = 20.3427 Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #9 Rep #1 pred log like = 44.5701 Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #10 Rep #1 pred log like = 0 AvgPred = 49.6942 with stdev = 36.9966 Completed at 0.333333 Next point at 3.33333 with value 0 and continue = 1 search[ 0.333333 ] = 49.6942(36.9966) Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #1 Rep #1 pred log like = 110.219 Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #2 Rep #1 pred log like = 24.7919 Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #3 Rep #1 pred log like = 79.7968 Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #4 Rep #1 pred log like = 106.149 Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #5 Rep #1 pred log like = 14.5878 Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #6 Rep #1 pred log like = 32.8915 Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #7 Rep #1 pred log like = 57.3441 Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #8 Rep #1 pred log like = 20.3443 Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #9 Rep #1 pred log like = 44.6337 Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #10 Rep #1 pred log like = 0 AvgPred = 49.0758 with stdev = 36.4729 Completed at 3.33333 Next point at 0.0333333 with value 0 and continue = 1 search[ 0.333333 ] = 49.6942(36.9966) search[ 3.33333 ] = 49.0758(36.4729) Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #1 Rep #1 pred log like = 118.443 Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #2 Rep #1 pred log like = 25.0614 Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #3 Rep #1 pred log like = 79.6334 Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #4 Rep #1 pred log like = 107.806 Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #5 Rep #1 pred log like = 15.7525 Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #6 Rep #1 pred log like = 34.0061 Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #7 Rep #1 pred log like = 60.6085 Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #8 Rep #1 pred log like = 20.3273 Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #9 Rep #1 pred log like = 43.169 Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #10 Rep #1 pred log like = 0 AvgPred = 50.4807 with stdev = 38.0685 Completed at 0.0333333 Next point at 0.00333333 with value 0 and continue = 1 search[ 0.0333333 ] = 50.4807(38.0685) search[ 0.333333 ] = 49.6942(36.9966) search[ 3.33333 ] = 49.0758(36.4729) Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #1 Rep #1 pred log like = 118.246 Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #2 Rep #1 pred log like = 25.4635 Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #3 Rep #1 pred log like = 79.0526 Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #4 Rep #1 pred log like = 106.001 Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #5 Rep #1 pred log like = 16.8111 Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #6 Rep #1 pred log like = 33.9945 Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #7 Rep #1 pred log like = 62.1884 Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #8 Rep #1 pred log like = 19.9614 Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #9 Rep #1 pred log like = 42.498 Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #10 Rep #1 pred log like = 0 AvgPred = 50.4216 with stdev = 37.6865 Completed at 0.00333333 Next point at 0.00386588 with value 50.4733 and continue = 0 search[ 0.00333333 ] = 50.4216(37.6865) search[ 0.0333333 ] = 50.4807(38.0685) search[ 0.333333 ] = 49.6942(36.9966) search[ 3.33333 ] = 49.0758(36.4729) Maximum predicted log likelihood (50.4733) estimated at: 0.00386588 (variance) 22.7453 (lambda) Fitting model at optimal hyperparameter Using prior: Laplace(22.7453) None Warning: BLR gradient is ill-conditioned Enforcing convergence! Performing 10-fold cross-validation [seed = 1772232147] with data partitions of sizes 1 1 1 1 1 1 1 1 1 0 Using 1 thread(s) Starting var = 0.333333 (default) Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #1 Rep #1 pred log like = 112.877 Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #2 Rep #1 pred log like = 24.9443 Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #3 Rep #1 pred log like = 79.8289 Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #4 Rep #1 pred log like = 106.597 Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #5 Rep #1 pred log like = 14.6736 Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #6 Rep #1 pred log like = 33.6273 Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #7 Rep #1 pred log like = 59.4948 Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #8 Rep #1 pred log like = 20.3426 Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #9 Rep #1 pred log like = 44.5887 Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #10 Rep #1 pred log like = 0 AvgPred = 49.6975 with stdev = 36.9979 Completed at 0.333333 Next point at 3.33333 with value 0 and continue = 1 search[ 0.333333 ] = 49.6975(36.9979) Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #1 Rep #1 pred log like = 110.226 Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #2 Rep #1 pred log like = 24.7792 Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #3 Rep #1 pred log like = 79.7715 Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #4 Rep #1 pred log like = 106.152 Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #5 Rep #1 pred log like = 14.5912 Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #6 Rep #1 pred log like = 32.9162 Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #7 Rep #1 pred log like = 57.3837 Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #8 Rep #1 pred log like = 20.3443 Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #9 Rep #1 pred log like = 44.6604 Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #10 Rep #1 pred log like = 0 AvgPred = 49.0824 with stdev = 36.4723 Completed at 3.33333 Next point at 0.0333333 with value 0 and continue = 1 search[ 0.333333 ] = 49.6975(36.9979) search[ 3.33333 ] = 49.0824(36.4723) Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #1 Rep #1 pred log like = 118.437 Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #2 Rep #1 pred log like = 25.0599 Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #3 Rep #1 pred log like = 79.633 Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #4 Rep #1 pred log like = 107.811 Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #5 Rep #1 pred log like = 15.7527 Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #6 Rep #1 pred log like = 34.0058 Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #7 Rep #1 pred log like = 60.6085 Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #8 Rep #1 pred log like = 20.3269 Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #9 Rep #1 pred log like = 43.169 Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #10 Rep #1 pred log like = 0 AvgPred = 50.4804 with stdev = 38.0683 Completed at 0.0333333 Next point at 0.00333333 with value 0 and continue = 1 search[ 0.0333333 ] = 50.4804(38.0683) search[ 0.333333 ] = 49.6975(36.9979) search[ 3.33333 ] = 49.0824(36.4723) Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #1 Rep #1 pred log like = 118.246 Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #2 Rep #1 pred log like = 25.4639 Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #3 Rep #1 pred log like = 79.0544 Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #4 Rep #1 pred log like = 106.001 Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #5 Rep #1 pred log like = 16.8122 Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #6 Rep #1 pred log like = 33.9947 Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #7 Rep #1 pred log like = 62.1884 Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #8 Rep #1 pred log like = 19.9614 Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #9 Rep #1 pred log like = 42.498 Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #10 Rep #1 pred log like = 0 AvgPred = 50.422 with stdev = 37.6865 Completed at 0.00333333 Next point at 0.00384963 with value 50.4734 and continue = 0 search[ 0.00333333 ] = 50.422(37.6865) search[ 0.0333333 ] = 50.4804(38.0683) search[ 0.333333 ] = 49.6975(36.9979) search[ 3.33333 ] = 49.0824(36.4723) Maximum predicted log likelihood (50.4734) estimated at: 0.00384963 (variance) 22.7932 (lambda) Fitting model at optimal hyperparameter Using prior: Laplace(22.7932) None Warning: BLR gradient is ill-conditioned Enforcing convergence! Sparseness = 80.112 % Sorting covariates by covariateId, stratumId, and rowId Using cross-validation selector type byPid Performing 10-fold cross-validation [seed = 123] with data partitions of sizes 100 100 100 100 100 100 100 100 100 100 Using 1 thread(s) Starting var = 0.1 Running at Laplace(4.47214) None Grid-point #1 at 0.1 Fold #1 Rep #1 pred log like = -14146.5 Running at Laplace(4.47214) None Grid-point #1 at 0.1 Fold #2 Rep #1 pred log like = -13824.3 Running at Laplace(4.47214) None Grid-point #1 at 0.1 Fold #3 Rep #1 pred log like = -13922.5 Running at Laplace(4.47214) None Grid-point #1 at 0.1 Fold #4 Rep #1 pred log like = -12009.7 Running at Laplace(4.47214) None Grid-point #1 at 0.1 Fold #5 Rep #1 pred log like = -13190.5 Running at Laplace(4.47214) None Grid-point #1 at 0.1 Fold #6 Rep #1 pred log like = -14032 Running at Laplace(4.47214) None Grid-point #1 at 0.1 Fold #7 Rep #1 pred log like = -13053.7 Running at Laplace(4.47214) None Grid-point #1 at 0.1 Fold #8 Rep #1 pred log like = -13911.1 Running at Laplace(4.47214) None Grid-point #1 at 0.1 Fold #9 Rep #1 pred log like = -13560.8 Running at Laplace(4.47214) None Grid-point #1 at 0.1 Fold #10 Rep #1 pred log like = -13052.5 AvgPred = -13470.4 with stdev = 621.67 Completed at 0.1 Next point at 1 with value 0 and continue = 1 search[ 0.1 ] = -13470.4(621.67) Running at Laplace(1.41421) None Grid-point #2 at 1 Fold #1 Rep #1 pred log like = -14146.5 Running at Laplace(1.41421) None Grid-point #2 at 1 Fold #2 Rep #1 pred log like = -13824.3 Running at Laplace(1.41421) None Grid-point #2 at 1 Fold #3 Rep #1 pred log like = -13922.5 Running at Laplace(1.41421) None Grid-point #2 at 1 Fold #4 Rep #1 pred log like = -12009.7 Running at Laplace(1.41421) None Grid-point #2 at 1 Fold #5 Rep #1 pred log like = -13190.5 Running at Laplace(1.41421) None Grid-point #2 at 1 Fold #6 Rep #1 pred log like = -14032 Running at Laplace(1.41421) None Grid-point #2 at 1 Fold #7 Rep #1 pred log like = -13053.7 Running at Laplace(1.41421) None Grid-point #2 at 1 Fold #8 Rep #1 pred log like = -13911.1 Running at Laplace(1.41421) None Grid-point #2 at 1 Fold #9 Rep #1 pred log like = -13560.8 Running at Laplace(1.41421) None Grid-point #2 at 1 Fold #10 Rep #1 pred log like = -13052.4 AvgPred = -13470.4 with stdev = 621.671 Completed at 1 Next point at 0.01 with value 0 and continue = 1 search[ 0.1 ] = -13470.4(621.67) search[ 1 ] = -13470.4(621.671) Running at Laplace(14.1421) None Grid-point #3 at 0.01 Fold #1 Rep #1 pred log like = -14146.5 Running at Laplace(14.1421) None Grid-point #3 at 0.01 Fold #2 Rep #1 pred log like = -13824.3 Running at Laplace(14.1421) None Grid-point #3 at 0.01 Fold #3 Rep #1 pred log like = -13922.5 Running at Laplace(14.1421) None Grid-point #3 at 0.01 Fold #4 Rep #1 pred log like = -12009.7 Running at Laplace(14.1421) None Grid-point #3 at 0.01 Fold #5 Rep #1 pred log like = -13190.3 Running at Laplace(14.1421) None Grid-point #3 at 0.01 Fold #6 Rep #1 pred log like = -14031.9 Running at Laplace(14.1421) None Grid-point #3 at 0.01 Fold #7 Rep #1 pred log like = -13053.7 Running at Laplace(14.1421) None Grid-point #3 at 0.01 Fold #8 Rep #1 pred log like = -13911.1 Running at Laplace(14.1421) None Grid-point #3 at 0.01 Fold #9 Rep #1 pred log like = -13560.8 Running at Laplace(14.1421) None Grid-point #3 at 0.01 Fold #10 Rep #1 pred log like = -13052.6 AvgPred = -13470.3 with stdev = 621.666 Completed at 0.01 Next point at 0.001 with value 0 and continue = 1 search[ 0.01 ] = -13470.3(621.666) search[ 0.1 ] = -13470.4(621.67) search[ 1 ] = -13470.4(621.671) Running at Laplace(44.7214) None Grid-point #4 at 0.001 Fold #1 Rep #1 pred log like = -14146.6 Running at Laplace(44.7214) None Grid-point #4 at 0.001 Fold #2 Rep #1 pred log like = -13824.2 Running at Laplace(44.7214) None Grid-point #4 at 0.001 Fold #3 Rep #1 pred log like = -13922.5 Running at Laplace(44.7214) None Grid-point #4 at 0.001 Fold #4 Rep #1 pred log like = -12009.6 Running at Laplace(44.7214) None Grid-point #4 at 0.001 Fold #5 Rep #1 pred log like = -13189.8 Running at Laplace(44.7214) None Grid-point #4 at 0.001 Fold #6 Rep #1 pred log like = -14031.6 Running at Laplace(44.7214) None Grid-point #4 at 0.001 Fold #7 Rep #1 pred log like = -13053.7 Running at Laplace(44.7214) None Grid-point #4 at 0.001 Fold #8 Rep #1 pred log like = -13911.2 Running at Laplace(44.7214) None Grid-point #4 at 0.001 Fold #9 Rep #1 pred log like = -13561 Running at Laplace(44.7214) None Grid-point #4 at 0.001 Fold #10 Rep #1 pred log like = -13052.9 AvgPred = -13470.3 with stdev = 621.685 Completed at 0.001 Next point at 0.0001 with value 0 and continue = 1 search[ 0.001 ] = -13470.3(621.685) search[ 0.01 ] = -13470.3(621.666) search[ 0.1 ] = -13470.4(621.67) search[ 1 ] = -13470.4(621.671) Running at Laplace(141.421) None Grid-point #5 at 0.0001 Fold #1 Rep #1 pred log like = -14146.6 Running at Laplace(141.421) None Grid-point #5 at 0.0001 Fold #2 Rep #1 pred log like = -13824.4 Running at Laplace(141.421) None Grid-point #5 at 0.0001 Fold #3 Rep #1 pred log like = -13922.3 Running at Laplace(141.421) None Grid-point #5 at 0.0001 Fold #4 Rep #1 pred log like = -12009.6 Running at Laplace(141.421) None Grid-point #5 at 0.0001 Fold #5 Rep #1 pred log like = -13189 Running at Laplace(141.421) None Grid-point #5 at 0.0001 Fold #6 Rep #1 pred log like = -14030.9 Running at Laplace(141.421) None Grid-point #5 at 0.0001 Fold #7 Rep #1 pred log like = -13053.6 Running at Laplace(141.421) None Grid-point #5 at 0.0001 Fold #8 Rep #1 pred log like = -13911.5 Running at Laplace(141.421) None Grid-point #5 at 0.0001 Fold #9 Rep #1 pred log like = -13561 Running at Laplace(141.421) None Grid-point #5 at 0.0001 Fold #10 Rep #1 pred log like = -13053.1 AvgPred = -13470.2 with stdev = 621.656 Completed at 0.0001 Next point at 1e-05 with value 0 and continue = 1 search[ 0.0001 ] = -13470.2(621.656) search[ 0.001 ] = -13470.3(621.685) search[ 0.01 ] = -13470.3(621.666) search[ 0.1 ] = -13470.4(621.67) search[ 1 ] = -13470.4(621.671) Running at Laplace(447.214) None Grid-point #6 at 1e-05 Fold #1 Rep #1 pred log like = -14146.6 Running at Laplace(447.214) None Grid-point #6 at 1e-05 Fold #2 Rep #1 pred log like = -13825.3 Running at Laplace(447.214) None Grid-point #6 at 1e-05 Fold #3 Rep #1 pred log like = -13922.8 Running at Laplace(447.214) None Grid-point #6 at 1e-05 Fold #4 Rep #1 pred log like = -12011.1 Running at Laplace(447.214) None Grid-point #6 at 1e-05 Fold #5 Rep #1 pred log like = -13189.7 Running at Laplace(447.214) None Grid-point #6 at 1e-05 Fold #6 Rep #1 pred log like = -14031.3 Running at Laplace(447.214) None Grid-point #6 at 1e-05 Fold #7 Rep #1 pred log like = -13054.9 Running at Laplace(447.214) None Grid-point #6 at 1e-05 Fold #8 Rep #1 pred log like = -13912.9 Running at Laplace(447.214) None Grid-point #6 at 1e-05 Fold #9 Rep #1 pred log like = -13562 Running at Laplace(447.214) None Grid-point #6 at 1e-05 Fold #10 Rep #1 pred log like = -13054.1 AvgPred = -13471.1 with stdev = 621.373 Completed at 1e-05 Next point at 0.0125877 with value -13470.2 and continue = 0 search[ 1e-05 ] = -13471.1(621.373) search[ 0.0001 ] = -13470.2(621.656) search[ 0.001 ] = -13470.3(621.685) search[ 0.01 ] = -13470.3(621.666) search[ 0.1 ] = -13470.4(621.67) search[ 1 ] = -13470.4(621.671) Maximum predicted log likelihood (-13470.2) estimated at: 0.0125877 (variance) 12.605 (lambda) Fitting model at optimal hyperparameter Using prior: Laplace(12.605) None Sparseness = 80.112 % Sorting outcomes by stratumId, time (descending), y and rowId Sorting covariates by covariateId, stratumId, time (descending), y, and rowId Sparseness = 99.09 % Sorting covariates by covariateId and rowId [ FAIL 0 | WARN 0 | SKIP 26 | PASS 347 ] ══ Skipped tests (26) ══════════════════════════════════════════════════════════ • Current not working (1): 'test-offsetPoisson.R:41:5' • GPU not available (6): 'test-gpucox.R:12:5', 'test-gpucox.R:37:5', 'test-gpucox.R:63:5', 'test-gpucox.R:88:5', 'test-gpucox.R:118:5', 'test-timevaryingCox.R:8:5' • Needs debugging (1): 'test-profileLikelihood.R:126:2' • On CRAN (11): 'test-cv.R:37:5', 'test-cv.R:110:5', 'test-cv.R:148:5', 'test-dataConversionStratified.R:113:3', 'test-largeBernoulli.R:26:5', 'test-largeBernoulli.R:73:5', 'test-outOfSample.R:7:5', 'test-parameterizedPriors.R:88:5', 'test-smallExactCLR.R:9:5', 'test-smallExactCLR.R:32:5', 'test-weighted_cv.R:5:5' • empty test (6): 'test-believedBroken.R:75:1', 'test-cprViaSql.R:5:1', 'test-multitypePoisson.R:113:1', 'test-multitypePoisson.R:146:1', 'test-sqlConstructor.R:101:1', 'test-weighting.R:259:1' • for debugging purposes; simulation takes too long (1): 'test-floatingPoint.R:57:5' [ FAIL 0 | WARN 0 | SKIP 26 | PASS 347 ] > > proc.time() user system elapsed 166.42 4.60 170.06