R Under development (unstable) (2025-07-17 r88424 ucrt) -- "Unsuffered Consequences" Copyright (C) 2025 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > test_check("Cyclops") Loading required package: Cyclops Sorting outcomes by stratumId and rowId Sorting covariates by covariateId, stratumId, and rowId Sparseness = 98.87 % Sorting covariates by covariateId and rowId Using cross-validation selector type byRow Performing 10-fold cross-validation [seed = 1752854838] with data partitions of sizes 100 100 100 100 100 100 100 100 100 100 Using 1 thread(s) Starting var = 0.0113 (default) Running at Laplace(13.3038) None Grid-point #1 at 0.0113 Fold #1 Rep #1 pred log like = -53.1115 Running at Laplace(13.3038) None Grid-point #1 at 0.0113 Fold #2 Rep #1 pred log like = -25.9128 Running at Laplace(13.3038) None Grid-point #1 at 0.0113 Fold #3 Rep #1 pred log like = -29.1562 Running at Laplace(13.3038) None Grid-point #1 at 0.0113 Fold #4 Rep #1 pred log like = -30.7941 Running at Laplace(13.3038) None Grid-point #1 at 0.0113 Fold #5 Rep #1 pred log like = -24.3071 Running at Laplace(13.3038) None Grid-point #1 at 0.0113 Fold #6 Rep #1 pred log like = -25.9128 Running at Laplace(13.3038) None Grid-point #1 at 0.0113 Fold #7 Rep #1 pred log like = -37.4555 Running at Laplace(13.3038) None Grid-point #1 at 0.0113 Fold #8 Rep #1 pred log like = -40.8534 Running at Laplace(13.3038) None Grid-point #1 at 0.0113 Fold #9 Rep #1 pred log like = -44.2971 Running at Laplace(13.3038) None Grid-point #1 at 0.0113 Fold #10 Rep #1 pred log like = -19.553 Running at Laplace(13.3038) None Grid-point #1 at 0.0113 Fold #1 Rep #2 pred log like = -32.4429 Running at Laplace(13.3038) None Grid-point #1 at 0.0113 Fold #2 Rep #2 pred log like = -35.7735 Running at Laplace(13.3038) None Grid-point #1 at 0.0113 Fold #3 Rep #2 pred log like = -35.7735 Running at Laplace(13.3038) None Grid-point #1 at 0.0113 Fold #4 Rep #2 pred log like = -25.9128 Running at Laplace(13.3038) None Grid-point #1 at 0.0113 Fold #5 Rep #2 pred log like = -39.1488 Running at Laplace(13.3038) None Grid-point #1 at 0.0113 Fold #6 Rep #2 pred log like = -27.5291 Running at Laplace(13.3038) None Grid-point #1 at 0.0113 Fold #7 Rep #2 pred log like = -32.4429 Running at Laplace(13.3038) None Grid-point #1 at 0.0113 Fold #8 Rep #2 pred log like = -40.8534 Running at Laplace(13.3038) None Grid-point #1 at 0.0113 Fold #9 Rep #2 pred log like = -24.3071 Running at Laplace(13.3038) None Grid-point #1 at 0.0113 Fold #10 Rep #2 pred log like = -35.7735 Running at Laplace(13.3038) None Grid-point #1 at 0.0113 Fold #1 Rep #3 pred log like = -27.5291 Running at Laplace(13.3038) None Grid-point #1 at 0.0113 Fold #2 Rep #3 pred log like = -40.8534 Running at Laplace(13.3038) None Grid-point #1 at 0.0113 Fold #3 Rep #3 pred log like = -29.1562 Running at Laplace(13.3038) None Grid-point #1 at 0.0113 Fold #4 Rep #3 pred log like = -37.4555 Running at Laplace(13.3038) None Grid-point #1 at 0.0113 Fold #5 Rep #3 pred log like = -39.1488 Running at Laplace(13.3038) None Grid-point #1 at 0.0113 Fold #6 Rep #3 pred log like = -30.7941 Running at Laplace(13.3038) None Grid-point #1 at 0.0113 Fold #7 Rep #3 pred log like = -22.7119 Running at Laplace(13.3038) None Grid-point #1 at 0.0113 Fold #8 Rep #3 pred log like = -35.7735 Running at Laplace(13.3038) None Grid-point #1 at 0.0113 Fold #9 Rep #3 pred log like = -29.1562 Running at Laplace(13.3038) None Grid-point #1 at 0.0113 Fold #10 Rep #3 pred log like = -37.4555 Running at Laplace(13.3038) None Grid-point #1 at 0.0113 Fold #1 Rep #4 pred log like = -32.4429 Running at Laplace(13.3038) None Grid-point #1 at 0.0113 Fold #2 Rep #4 pred log like = -35.7735 Running at Laplace(13.3038) None Grid-point #1 at 0.0113 Fold #3 Rep #4 pred log like = -32.4429 Running at Laplace(13.3038) None Grid-point #1 at 0.0113 Fold #4 Rep #4 pred log like = -34.1027 Running at Laplace(13.3038) None Grid-point #1 at 0.0113 Fold #5 Rep #4 pred log like = -30.7941 Running at Laplace(13.3038) None Grid-point #1 at 0.0113 Fold #6 Rep #4 pred log like = -32.4429 Running at Laplace(13.3038) None Grid-point #1 at 0.0113 Fold #7 Rep #4 pred log like = -25.9128 Running at Laplace(13.3038) None Grid-point #1 at 0.0113 Fold #8 Rep #4 pred log like = -40.8534 Running at Laplace(13.3038) None Grid-point #1 at 0.0113 Fold #9 Rep #4 pred log like = -32.4429 Running at Laplace(13.3038) None Grid-point #1 at 0.0113 Fold #10 Rep #4 pred log like = -32.4429 AvgPred = -33.0249 with stdev = 6.54465 Completed at 0.0113 Next point at 0.113 with value 0 and continue = 1 search[ 0.0113 ] = -33.0249(6.54465) Running at Laplace(4.20703) None Grid-point #2 at 0.113 Fold #1 Rep #1 pred log like = -53.1115 Running at Laplace(4.20703) None Grid-point #2 at 0.113 Fold #2 Rep #1 pred log like = -25.9128 Running at Laplace(4.20703) None Grid-point #2 at 0.113 Fold #3 Rep #1 pred log like = -29.1562 Running at Laplace(4.20703) None Grid-point #2 at 0.113 Fold #4 Rep #1 pred log like = -30.7941 Running at Laplace(4.20703) None Grid-point #2 at 0.113 Fold #5 Rep #1 pred log like = -24.3071 Running at Laplace(4.20703) None Grid-point #2 at 0.113 Fold #6 Rep #1 pred log like = -25.9128 Running at Laplace(4.20703) None Grid-point #2 at 0.113 Fold #7 Rep #1 pred log like = -37.4555 Running at Laplace(4.20703) None Grid-point #2 at 0.113 Fold #8 Rep #1 pred log like = -40.8534 Running at Laplace(4.20703) None Grid-point #2 at 0.113 Fold #9 Rep #1 pred log like = -44.2971 Running at Laplace(4.20703) None Grid-point #2 at 0.113 Fold #10 Rep #1 pred log like = -19.553 Running at Laplace(4.20703) None Grid-point #2 at 0.113 Fold #1 Rep #2 pred log like = -32.4429 Running at Laplace(4.20703) None Grid-point #2 at 0.113 Fold #2 Rep #2 pred log like = -35.7735 Running at Laplace(4.20703) None Grid-point #2 at 0.113 Fold #3 Rep #2 pred log like = -35.7735 Running at Laplace(4.20703) None Grid-point #2 at 0.113 Fold #4 Rep #2 pred log like = -25.9128 Running at Laplace(4.20703) None Grid-point #2 at 0.113 Fold #5 Rep #2 pred log like = -39.1488 Running at Laplace(4.20703) None Grid-point #2 at 0.113 Fold #6 Rep #2 pred log like = -27.5291 Running at Laplace(4.20703) None Grid-point #2 at 0.113 Fold #7 Rep #2 pred log like = -32.4429 Running at Laplace(4.20703) None Grid-point #2 at 0.113 Fold #8 Rep #2 pred log like = -40.8534 Running at Laplace(4.20703) None Grid-point #2 at 0.113 Fold #9 Rep #2 pred log like = -24.3071 Running at Laplace(4.20703) None Grid-point #2 at 0.113 Fold #10 Rep #2 pred log like = -35.7735 Running at Laplace(4.20703) None Grid-point #2 at 0.113 Fold #1 Rep #3 pred log like = -27.5291 Running at Laplace(4.20703) None Grid-point #2 at 0.113 Fold #2 Rep #3 pred log like = -40.8534 Running at Laplace(4.20703) None Grid-point #2 at 0.113 Fold #3 Rep #3 pred log like = -29.1562 Running at Laplace(4.20703) None Grid-point #2 at 0.113 Fold #4 Rep #3 pred log like = -37.4555 Running at Laplace(4.20703) None Grid-point #2 at 0.113 Fold #5 Rep #3 pred log like = -39.1488 Running at Laplace(4.20703) None Grid-point #2 at 0.113 Fold #6 Rep #3 pred log like = -30.7941 Running at Laplace(4.20703) None Grid-point #2 at 0.113 Fold #7 Rep #3 pred log like = -22.7119 Running at Laplace(4.20703) None Grid-point #2 at 0.113 Fold #8 Rep #3 pred log like = -35.7735 Running at Laplace(4.20703) None Grid-point #2 at 0.113 Fold #9 Rep #3 pred log like = -29.1562 Running at Laplace(4.20703) None Grid-point #2 at 0.113 Fold #10 Rep #3 pred log like = -37.4555 Running at Laplace(4.20703) None Grid-point #2 at 0.113 Fold #1 Rep #4 pred log like = -32.4429 Running at Laplace(4.20703) None Grid-point #2 at 0.113 Fold #2 Rep #4 pred log like = -35.7735 Running at Laplace(4.20703) None Grid-point #2 at 0.113 Fold #3 Rep #4 pred log like = -32.4429 Running at Laplace(4.20703) None Grid-point #2 at 0.113 Fold #4 Rep #4 pred log like = -34.1027 Running at Laplace(4.20703) None Grid-point #2 at 0.113 Fold #5 Rep #4 pred log like = -30.7941 Running at Laplace(4.20703) None Grid-point #2 at 0.113 Fold #6 Rep #4 pred log like = -32.4429 Running at Laplace(4.20703) None Grid-point #2 at 0.113 Fold #7 Rep #4 pred log like = -25.9128 Running at Laplace(4.20703) None Grid-point #2 at 0.113 Fold #8 Rep #4 pred log like = -40.8534 Running at Laplace(4.20703) None Grid-point #2 at 0.113 Fold #9 Rep #4 pred log like = -32.4429 Running at Laplace(4.20703) None Grid-point #2 at 0.113 Fold #10 Rep #4 pred log like = -32.4429 AvgPred = -33.0249 with stdev = 6.54465 Completed at 0.113 Next point at 1.13 with value 0 and continue = 1 search[ 0.0113 ] = -33.0249(6.54465) search[ 0.113 ] = -33.0249(6.54465) Running at Laplace(1.33038) None Grid-point #3 at 1.13 Fold #1 Rep #1 pred log like = -53.1629 Running at Laplace(1.33038) None Grid-point #3 at 1.13 Fold #2 Rep #1 pred log like = -25.8658 Running at Laplace(1.33038) None Grid-point #3 at 1.13 Fold #3 Rep #1 pred log like = -29.4397 Running at Laplace(1.33038) None Grid-point #3 at 1.13 Fold #4 Rep #1 pred log like = -30.6825 Running at Laplace(1.33038) None Grid-point #3 at 1.13 Fold #5 Rep #1 pred log like = -24.2524 Running at Laplace(1.33038) None Grid-point #3 at 1.13 Fold #6 Rep #1 pred log like = -25.7769 Running at Laplace(1.33038) None Grid-point #3 at 1.13 Fold #7 Rep #1 pred log like = -37.6809 Running at Laplace(1.33038) None Grid-point #3 at 1.13 Fold #8 Rep #1 pred log like = -40.7429 Running at Laplace(1.33038) None Grid-point #3 at 1.13 Fold #9 Rep #1 pred log like = -44.3435 Running at Laplace(1.33038) None Grid-point #3 at 1.13 Fold #10 Rep #1 pred log like = -19.5235 Running at Laplace(1.33038) None Grid-point #3 at 1.13 Fold #1 Rep #2 pred log like = -32.423 Running at Laplace(1.33038) None Grid-point #3 at 1.13 Fold #2 Rep #2 pred log like = -35.8048 Running at Laplace(1.33038) None Grid-point #3 at 1.13 Fold #3 Rep #2 pred log like = -35.8884 Running at Laplace(1.33038) None Grid-point #3 at 1.13 Fold #4 Rep #2 pred log like = -25.7769 Running at Laplace(1.33038) None Grid-point #3 at 1.13 Fold #5 Rep #2 pred log like = -39.1165 Running at Laplace(1.33038) None Grid-point #3 at 1.13 Fold #6 Rep #2 pred log like = -27.4919 Running at Laplace(1.33038) None Grid-point #3 at 1.13 Fold #7 Rep #2 pred log like = -32.3382 Running at Laplace(1.33038) None Grid-point #3 at 1.13 Fold #8 Rep #2 pred log like = -41.0487 Running at Laplace(1.33038) None Grid-point #3 at 1.13 Fold #9 Rep #2 pred log like = -24.2636 Running at Laplace(1.33038) None Grid-point #3 at 1.13 Fold #10 Rep #2 pred log like = -35.7839 Running at Laplace(1.33038) None Grid-point #3 at 1.13 Fold #1 Rep #3 pred log like = -27.4737 Running at Laplace(1.33038) None Grid-point #3 at 1.13 Fold #2 Rep #3 pred log like = -40.8581 Running at Laplace(1.33038) None Grid-point #3 at 1.13 Fold #3 Rep #3 pred log like = -29.4021 Running at Laplace(1.33038) None Grid-point #3 at 1.13 Fold #4 Rep #3 pred log like = -37.4235 Running at Laplace(1.33038) None Grid-point #3 at 1.13 Fold #5 Rep #3 pred log like = -39.1805 Running at Laplace(1.33038) None Grid-point #3 at 1.13 Fold #6 Rep #3 pred log like = -30.7467 Running at Laplace(1.33038) None Grid-point #3 at 1.13 Fold #7 Rep #3 pred log like = -22.5951 Running at Laplace(1.33038) None Grid-point #3 at 1.13 Fold #8 Rep #3 pred log like = -35.7636 Running at Laplace(1.33038) None Grid-point #3 at 1.13 Fold #9 Rep #3 pred log like = -29.4379 Running at Laplace(1.33038) None Grid-point #3 at 1.13 Fold #10 Rep #3 pred log like = -37.4235 Running at Laplace(1.33038) None Grid-point #3 at 1.13 Fold #1 Rep #4 pred log like = -32.3731 Running at Laplace(1.33038) None Grid-point #3 at 1.13 Fold #2 Rep #4 pred log like = -35.5827 Running at Laplace(1.33038) None Grid-point #3 at 1.13 Fold #3 Rep #4 pred log like = -32.4475 Running at Laplace(1.33038) None Grid-point #3 at 1.13 Fold #4 Rep #4 pred log like = -34.0146 Running at Laplace(1.33038) None Grid-point #3 at 1.13 Fold #5 Rep #4 pred log like = -30.7713 Running at Laplace(1.33038) None Grid-point #3 at 1.13 Fold #6 Rep #4 pred log like = -32.7572 Running at Laplace(1.33038) None Grid-point #3 at 1.13 Fold #7 Rep #4 pred log like = -26.2772 Running at Laplace(1.33038) None Grid-point #3 at 1.13 Fold #8 Rep #4 pred log like = -40.8029 Running at Laplace(1.33038) None Grid-point #3 at 1.13 Fold #9 Rep #4 pred log like = -32.6519 Running at Laplace(1.33038) None Grid-point #3 at 1.13 Fold #10 Rep #4 pred log like = -32.4679 AvgPred = -33.0465 with stdev = 6.55391 Completed at 1.13 Next point at 0.0357337 with value -33.0222 and continue = 0 search[ 0.0113 ] = -33.0249(6.54465) search[ 0.113 ] = -33.0249(6.54465) search[ 1.13 ] = -33.0465(6.55391) Maximum predicted log likelihood (-33.0222) estimated at: 0.0357337 (variance) 7.48128 (lambda) Fitting model at optimal hyperparameter Using prior: Laplace(7.48128) None Sorting outcomes by stratumId and rowId Sorting covariates by covariateId, stratumId, and rowId Sorting outcomes by stratumId, time (descending), y and rowId Sorting covariates by covariateId, stratumId, time (descending), y, and rowId Sorting outcomes by stratumId, time (descending), y and rowId Sorting covariates by covariateId, stratumId, time (descending), y, and rowId Sorting outcomes by stratumId, time (descending), y and rowId Sorting covariates by covariateId, stratumId, time (descending), y, and rowId Sparseness = 75.595 % Sorting covariates by covariateId and rowId Sparseness = 98.96 % Sorting covariates by covariateId and rowId Sorting covariates by covariateId and rowId Sorting covariates by covariateId and rowId Sparseness = 98.96 % Sorting outcomes by rowId Sorting covariates by covariateId and rowId Sparseness = 76.15 % Sorting covariates by covariateId and rowId Sparseness = 75.695 % Sorting covariates by covariateId and rowId Sparseness = 75.9 % Sorting covariates by covariateId and rowId Sparseness = 75.3 % Sorting covariates by covariateId and rowId Sparseness = 76.4 % Sorting covariates by covariateId and rowId Analysis took 0.0323 secs ( 0.00109 ) Fitting model using clogit Analysis took 0.108 secs Sparseness = 76.4 % Sorting outcomes by stratumId, time (descending), y and rowId Sorting covariates by covariateId, stratumId, time (descending), y, and rowId Sorting outcomes by stratumId, time (descending), y and rowId Sorting covariates by covariateId, stratumId, time (descending), y, and rowId Sorting outcomes by stratumId, time (descending), y and rowId Sorting covariates by covariateId, stratumId, time (descending), y, and rowId Analysis took 0.0113 secs ( 0.000242 ) Fitting model using coxpht Analysis took 0.00879 secs Using prior: None log post: -153.562 (-153.562 + 0) (iter:1, conv: 1.49516) log post: -140.336 (-140.336 + 0) (iter:2, conv: 0.417984) log post: -132.01 (-132.01 + 0) (iter:3, conv: 0.261069) log post: -126.375 (-126.375 + 0) (iter:4, conv: 0.183922) log post: -122.375 (-122.375 + 0) (iter:5, conv: 0.136891) log post: -119.439 (-119.439 + 0) (iter:6, conv: 0.106878) log post: -117.228 (-117.228 + 0) (iter:7, conv: 0.0862994) log post: -115.53 (-115.53 + 0) (iter:8, conv: 0.071395) log post: -114.206 (-114.206 + 0) (iter:9, conv: 0.060154) log post: -113.159 (-113.159 + 0) (iter:10, conv: 0.051408) log post: -112.323 (-112.323 + 0) (iter:11, conv: 0.0444337) log post: -111.649 (-111.649 + 0) (iter:12, conv: 0.0387604) log post: -111.102 (-111.102 + 0) (iter:13, conv: 0.0340695) log post: -110.655 (-110.655 + 0) (iter:14, conv: 0.0301375) log post: -110.288 (-110.288 + 0) (iter:15, conv: 0.0268034) log post: -109.985 (-109.985 + 0) (iter:16, conv: 0.0239483) log post: -109.733 (-109.733 + 0) (iter:17, conv: 0.0214827) log post: -109.524 (-109.524 + 0) (iter:18, conv: 0.0193378) log post: -109.349 (-109.349 + 0) (iter:19, conv: 0.0174597) log post: -109.202 (-109.202 + 0) (iter:20, conv: 0.0158061) log post: -109.079 (-109.079 + 0) (iter:21, conv: 0.0143429) log post: -108.976 (-108.976 + 0) (iter:22, conv: 0.0130423) log post: -108.889 (-108.889 + 0) (iter:23, conv: 0.0118819) log post: -108.815 (-108.815 + 0) (iter:24, conv: 0.0108428) log post: -108.752 (-108.752 + 0) (iter:25, conv: 0.00990905) log post: -108.7 (-108.7 + 0) (iter:26, conv: 0.00906454) log post: -108.655 (-108.655 + 0) (iter:27, conv: 0.00830244) log post: -108.616 (-108.616 + 0) (iter:28, conv: 0.00761308) log post: -108.584 (-108.584 + 0) (iter:29, conv: 0.00698817) log post: -108.556 (-108.556 + 0) (iter:30, conv: 0.00642058) log post: -108.533 (-108.533 + 0) (iter:31, conv: 0.00590412) log post: -108.512 (-108.512 + 0) (iter:32, conv: 0.00543344) log post: -108.495 (-108.495 + 0) (iter:33, conv: 0.00500383) log post: -108.48 (-108.48 + 0) (iter:34, conv: 0.00461118) log post: -108.468 (-108.468 + 0) (iter:35, conv: 0.00425187) log post: -108.457 (-108.457 + 0) (iter:36, conv: 0.00392269) log post: -108.448 (-108.448 + 0) (iter:37, conv: 0.00362081) log post: -108.44 (-108.44 + 0) (iter:38, conv: 0.00334369) log post: -108.433 (-108.433 + 0) (iter:39, conv: 0.00308909) log post: -108.427 (-108.427 + 0) (iter:40, conv: 0.00285498) log post: -108.422 (-108.422 + 0) (iter:41, conv: 0.00263955) log post: -108.418 (-108.418 + 0) (iter:42, conv: 0.00244118) log post: -108.415 (-108.415 + 0) (iter:43, conv: 0.0022584) log post: -108.411 (-108.411 + 0) (iter:44, conv: 0.00208989) log post: -108.409 (-108.409 + 0) (iter:45, conv: 0.00193445) log post: -108.406 (-108.406 + 0) (iter:46, conv: 0.001791) log post: -108.404 (-108.404 + 0) (iter:47, conv: 0.00165855) log post: -108.403 (-108.403 + 0) (iter:48, conv: 0.00153621) log post: -108.401 (-108.401 + 0) (iter:49, conv: 0.00142316) log post: -108.4 (-108.4 + 0) (iter:50, conv: 0.00131866) log post: -108.399 (-108.399 + 0) (iter:51, conv: 0.00122202) log post: -108.398 (-108.398 + 0) (iter:52, conv: 0.00113264) log post: -108.397 (-108.397 + 0) (iter:53, conv: 0.00104994) log post: -108.396 (-108.396 + 0) (iter:54, conv: 0.000973398) log post: -108.396 (-108.396 + 0) (iter:55, conv: 0.000902544) log post: -108.395 (-108.395 + 0) (iter:56, conv: 0.000836938) log post: -108.395 (-108.395 + 0) (iter:57, conv: 0.00077618) log post: -108.394 (-108.394 + 0) (iter:58, conv: 0.0007199) log post: -108.394 (-108.394 + 0) (iter:59, conv: 0.000667758) log post: -108.394 (-108.394 + 0) (iter:60, conv: 0.000619443) log post: -108.393 (-108.393 + 0) (iter:61, conv: 0.000574666) log post: -108.393 (-108.393 + 0) (iter:62, conv: 0.000533163) log post: -108.393 (-108.393 + 0) (iter:63, conv: 0.000494688) log post: -108.393 (-108.393 + 0) (iter:64, conv: 0.000459018) log post: -108.393 (-108.393 + 0) (iter:65, conv: 0.000425942) log post: -108.393 (-108.393 + 0) (iter:66, conv: 0.000395271) log post: -108.393 (-108.393 + 0) (iter:67, conv: 0.000366825) log post: -108.393 (-108.393 + 0) (iter:68, conv: 0.000340441) log post: -108.392 (-108.392 + 0) (iter:69, conv: 0.000315968) log post: -108.392 (-108.392 + 0) (iter:70, conv: 0.000293265) log post: -108.392 (-108.392 + 0) (iter:71, conv: 0.000272203) log post: -108.392 (-108.392 + 0) (iter:72, conv: 0.000252661) log post: -108.392 (-108.392 + 0) (iter:73, conv: 0.00023453) log post: -108.392 (-108.392 + 0) (iter:74, conv: 0.000217706) log post: -108.392 (-108.392 + 0) (iter:75, conv: 0.000202094) log post: -108.392 (-108.392 + 0) (iter:76, conv: 0.000187606) log post: -108.392 (-108.392 + 0) (iter:77, conv: 0.00017416) log post: -108.392 (-108.392 + 0) (iter:78, conv: 0.000161682) log post: -108.392 (-108.392 + 0) (iter:79, conv: 0.000150101) log post: -108.392 (-108.392 + 0) (iter:80, conv: 0.000139351) log post: -108.392 (-108.392 + 0) (iter:81, conv: 0.000129374) log post: -108.392 (-108.392 + 0) (iter:82, conv: 0.000120112) log post: -108.392 (-108.392 + 0) (iter:83, conv: 0.000111516) log post: -108.392 (-108.392 + 0) (iter:84, conv: 0.000103536) log post: -108.392 (-108.392 + 0) (iter:85, conv: 9.6128e-05) log post: -108.392 (-108.392 + 0) (iter:86, conv: 8.92512e-05) log post: -108.392 (-108.392 + 0) (iter:87, conv: 8.28673e-05) log post: -108.392 (-108.392 + 0) (iter:88, conv: 7.69408e-05) log post: -108.392 (-108.392 + 0) (iter:89, conv: 7.14387e-05) log post: -108.392 (-108.392 + 0) (iter:90, conv: 6.63307e-05) log post: -108.392 (-108.392 + 0) (iter:91, conv: 6.15884e-05) log post: -108.392 (-108.392 + 0) (iter:92, conv: 5.71856e-05) log post: -108.392 (-108.392 + 0) (iter:93, conv: 5.30979e-05) log post: -108.392 (-108.392 + 0) (iter:94, conv: 4.93026e-05) log post: -108.392 (-108.392 + 0) (iter:95, conv: 4.5779e-05) log post: -108.392 (-108.392 + 0) (iter:96, conv: 4.25074e-05) log post: -108.392 (-108.392 + 0) (iter:97, conv: 3.94698e-05) log post: -108.392 (-108.392 + 0) (iter:98, conv: 3.66494e-05) log post: -108.392 (-108.392 + 0) (iter:99, conv: 3.40307e-05) log post: -108.392 (-108.392 + 0) (iter:100, conv: 3.15993e-05) log post: -108.392 (-108.392 + 0) (iter:101, conv: 2.93417e-05) log post: -108.392 (-108.392 + 0) (iter:102, conv: 2.72454e-05) log post: -108.392 (-108.392 + 0) (iter:103, conv: 2.5299e-05) log post: -108.392 (-108.392 + 0) (iter:104, conv: 2.34918e-05) log post: -108.392 (-108.392 + 0) (iter:105, conv: 2.18137e-05) log post: -108.392 (-108.392 + 0) (iter:106, conv: 2.02555e-05) log post: -108.392 (-108.392 + 0) (iter:107, conv: 1.88087e-05) log post: -108.392 (-108.392 + 0) (iter:108, conv: 1.74652e-05) log post: -108.392 (-108.392 + 0) (iter:109, conv: 1.62178e-05) log post: -108.392 (-108.392 + 0) (iter:110, conv: 1.50595e-05) log post: -108.392 (-108.392 + 0) (iter:111, conv: 1.39839e-05) log post: -108.392 (-108.392 + 0) (iter:112, conv: 1.29852e-05) log post: -108.392 (-108.392 + 0) (iter:113, conv: 1.20578e-05) log post: -108.392 (-108.392 + 0) (iter:114, conv: 1.11967e-05) log post: -108.392 (-108.392 + 0) (iter:115, conv: 1.0397e-05) log post: -108.392 (-108.392 + 0) (iter:116, conv: 9.65454e-06) log post: -108.392 (-108.392 + 0) (iter:117, conv: 8.96507e-06) log post: -108.392 (-108.392 + 0) (iter:118, conv: 8.32486e-06) log post: -108.392 (-108.392 + 0) (iter:119, conv: 7.73036e-06) log post: -108.392 (-108.392 + 0) (iter:120, conv: 7.17833e-06) log post: -108.392 (-108.392 + 0) (iter:121, conv: 6.66573e-06) log post: -108.392 (-108.392 + 0) (iter:122, conv: 6.18973e-06) log post: -108.392 (-108.392 + 0) (iter:123, conv: 5.74773e-06) log post: -108.392 (-108.392 + 0) (iter:124, conv: 5.3373e-06) log post: -108.392 (-108.392 + 0) (iter:125, conv: 4.95617e-06) log post: -108.392 (-108.392 + 0) (iter:126, conv: 4.60227e-06) log post: -108.392 (-108.392 + 0) (iter:127, conv: 4.27364e-06) log post: -108.392 (-108.392 + 0) (iter:128, conv: 3.96847e-06) log post: -108.392 (-108.392 + 0) (iter:129, conv: 3.6851e-06) log post: -108.392 (-108.392 + 0) (iter:130, conv: 3.42197e-06) log post: -108.392 (-108.392 + 0) (iter:131, conv: 3.17762e-06) log post: -108.392 (-108.392 + 0) (iter:132, conv: 2.95073e-06) log post: -108.392 (-108.392 + 0) (iter:133, conv: 2.74003e-06) log post: -108.392 (-108.392 + 0) (iter:134, conv: 2.54439e-06) log post: -108.392 (-108.392 + 0) (iter:135, conv: 2.36271e-06) log post: -108.392 (-108.392 + 0) (iter:136, conv: 2.194e-06) log post: -108.392 (-108.392 + 0) (iter:137, conv: 2.03734e-06) log post: -108.392 (-108.392 + 0) (iter:138, conv: 1.89187e-06) log post: -108.392 (-108.392 + 0) (iter:139, conv: 1.75679e-06) log post: -108.392 (-108.392 + 0) (iter:140, conv: 1.63135e-06) log post: -108.392 (-108.392 + 0) (iter:141, conv: 1.51487e-06) log post: -108.392 (-108.392 + 0) (iter:142, conv: 1.4067e-06) log post: -108.392 (-108.392 + 0) (iter:143, conv: 1.30626e-06) log post: -108.392 (-108.392 + 0) (iter:144, conv: 1.21299e-06) log post: -108.392 (-108.392 + 0) (iter:145, conv: 1.12638e-06) log post: -108.392 (-108.392 + 0) (iter:146, conv: 1.04596e-06) log post: -108.392 (-108.392 + 0) (iter:147, conv: 9.71275e-07) Reached convergence criterion Using prior: Laplace(1.41421) None KKT Swindle count 1, activeSet size = 1 update time: 2.97e-05 in 1 iterations. Inactive set violations: 1 KKT Swindle count 2, activeSet size = 2 update time: 0.0044445 in 134 iterations. Sparseness = 99.012 % Sorting outcomes by stratumId, time (descending), y and rowId Sorting covariates by covariateId, stratumId, time (descending), y, and rowId Sorting covariates by covariateId, stratumId, time (descending), y, and rowId Sorting covariates by covariateId, stratumId, time (descending), y, and rowId Generating censoring weights Generating censoring weights Sorting outcomes by stratumId, time (descending), y and rowId Sorting covariates by covariateId, stratumId, time (descending), y, and rowId Sorting outcomes by stratumId, time (descending), y and rowId Sorting covariates by covariateId, stratumId, time (descending), y, and rowId Using cross-validation selector type byRow Performing 10-fold cross-validation [seed = 1752854852] with data partitions of sizes 1 1 1 1 1 1 1 1 1 0 Using 1 thread(s) Starting var = 0.333333 (default) Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #1 Rep #1 pred log like = 112.869 Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #2 Rep #1 pred log like = 24.9457 Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #3 Rep #1 pred log like = 106.597 Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #4 Rep #1 pred log like = 59.4912 Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #5 Rep #1 pred log like = 44.5701 Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #6 Rep #1 pred log like = 20.3427 Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #7 Rep #1 pred log like = 33.625 Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #8 Rep #1 pred log like = 79.8291 Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #9 Rep #1 pred log like = 14.674 Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #10 Rep #1 pred log like = 0 AvgPred = 49.6944 with stdev = 36.9967 Completed at 0.333333 Next point at 3.33333 with value 0 and continue = 1 search[ 0.333333 ] = 49.6944(36.9967) Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #1 Rep #1 pred log like = 110.219 Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #2 Rep #1 pred log like = 24.7919 Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #3 Rep #1 pred log like = 106.149 Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #4 Rep #1 pred log like = 57.3442 Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #5 Rep #1 pred log like = 44.6548 Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #6 Rep #1 pred log like = 20.3443 Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #7 Rep #1 pred log like = 32.8915 Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #8 Rep #1 pred log like = 79.7708 Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #9 Rep #1 pred log like = 14.5878 Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #10 Rep #1 pred log like = 0 AvgPred = 49.0754 with stdev = 36.4705 Completed at 3.33333 Next point at 0.0333333 with value 0 and continue = 1 search[ 0.333333 ] = 49.6944(36.9967) search[ 3.33333 ] = 49.0754(36.4705) Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #1 Rep #1 pred log like = 118.443 Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #2 Rep #1 pred log like = 25.0614 Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #3 Rep #1 pred log like = 107.806 Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #4 Rep #1 pred log like = 60.6085 Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #5 Rep #1 pred log like = 43.169 Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #6 Rep #1 pred log like = 20.3273 Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #7 Rep #1 pred log like = 34.0061 Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #8 Rep #1 pred log like = 79.6334 Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #9 Rep #1 pred log like = 15.7525 Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #10 Rep #1 pred log like = 0 AvgPred = 50.4807 with stdev = 38.0685 Completed at 0.0333333 Next point at 0.00333333 with value 0 and continue = 1 search[ 0.0333333 ] = 50.4807(38.0685) search[ 0.333333 ] = 49.6944(36.9967) search[ 3.33333 ] = 49.0754(36.4705) Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #1 Rep #1 pred log like = 118.246 Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #2 Rep #1 pred log like = 25.4635 Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #3 Rep #1 pred log like = 106.001 Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #4 Rep #1 pred log like = 62.1884 Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #5 Rep #1 pred log like = 42.498 Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #6 Rep #1 pred log like = 19.9614 Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #7 Rep #1 pred log like = 33.9945 Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #8 Rep #1 pred log like = 79.0526 Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #9 Rep #1 pred log like = 16.8111 Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #10 Rep #1 pred log like = 0 AvgPred = 50.4216 with stdev = 37.6865 Completed at 0.00333333 Next point at 0.00387534 with value 50.4732 and continue = 0 search[ 0.00333333 ] = 50.4216(37.6865) search[ 0.0333333 ] = 50.4807(38.0685) search[ 0.333333 ] = 49.6944(36.9967) search[ 3.33333 ] = 49.0754(36.4705) Maximum predicted log likelihood (50.4732) estimated at: 0.00387534 (variance) 22.7175 (lambda) Fitting model at optimal hyperparameter Using prior: Laplace(22.7175) None Warning: BLR gradient is ill-conditioned Enforcing convergence! Performing 10-fold cross-validation [seed = 1752854852] with data partitions of sizes 1 1 1 1 1 1 1 1 1 0 Using 1 thread(s) Starting var = 0.333333 (default) Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #1 Rep #1 pred log like = 112.877 Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #2 Rep #1 pred log like = 24.9443 Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #3 Rep #1 pred log like = 106.597 Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #4 Rep #1 pred log like = 59.4589 Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #5 Rep #1 pred log like = 44.5878 Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #6 Rep #1 pred log like = 20.3428 Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #7 Rep #1 pred log like = 33.628 Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #8 Rep #1 pred log like = 79.8292 Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #9 Rep #1 pred log like = 14.6737 Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #10 Rep #1 pred log like = 0 AvgPred = 49.6939 with stdev = 36.9969 Completed at 0.333333 Next point at 3.33333 with value 0 and continue = 1 search[ 0.333333 ] = 49.6939(36.9969) Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #1 Rep #1 pred log like = 110.226 Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #2 Rep #1 pred log like = 24.7792 Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #3 Rep #1 pred log like = 106.151 Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #4 Rep #1 pred log like = 57.3861 Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #5 Rep #1 pred log like = 44.6633 Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #6 Rep #1 pred log like = 20.3443 Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #7 Rep #1 pred log like = 32.916 Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #8 Rep #1 pred log like = 79.7721 Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #9 Rep #1 pred log like = 14.591 Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #10 Rep #1 pred log like = 0 AvgPred = 49.0828 with stdev = 36.4723 Completed at 3.33333 Next point at 0.0333333 with value 0 and continue = 1 search[ 0.333333 ] = 49.6939(36.9969) search[ 3.33333 ] = 49.0828(36.4723) Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #1 Rep #1 pred log like = 118.437 Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #2 Rep #1 pred log like = 25.0599 Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #3 Rep #1 pred log like = 107.809 Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #4 Rep #1 pred log like = 60.6085 Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #5 Rep #1 pred log like = 43.169 Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #6 Rep #1 pred log like = 20.3277 Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #7 Rep #1 pred log like = 34.0065 Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #8 Rep #1 pred log like = 79.6334 Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #9 Rep #1 pred log like = 15.7527 Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #10 Rep #1 pred log like = 0 AvgPred = 50.4804 with stdev = 38.068 Completed at 0.0333333 Next point at 0.00333333 with value 0 and continue = 1 search[ 0.0333333 ] = 50.4804(38.068) search[ 0.333333 ] = 49.6939(36.9969) search[ 3.33333 ] = 49.0828(36.4723) Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #1 Rep #1 pred log like = 118.246 Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #2 Rep #1 pred log like = 25.4639 Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #3 Rep #1 pred log like = 106.001 Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #4 Rep #1 pred log like = 62.1884 Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #5 Rep #1 pred log like = 42.498 Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #6 Rep #1 pred log like = 19.9614 Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #7 Rep #1 pred log like = 33.9942 Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #8 Rep #1 pred log like = 79.0552 Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #9 Rep #1 pred log like = 16.812 Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #10 Rep #1 pred log like = 0 AvgPred = 50.422 with stdev = 37.6866 Completed at 0.00333333 Next point at 0.00376682 with value 50.4737 and continue = 0 search[ 0.00333333 ] = 50.422(37.6866) search[ 0.0333333 ] = 50.4804(38.068) search[ 0.333333 ] = 49.6939(36.9969) search[ 3.33333 ] = 49.0828(36.4723) Maximum predicted log likelihood (50.4737) estimated at: 0.00376682 (variance) 23.0424 (lambda) Fitting model at optimal hyperparameter Using prior: Laplace(23.0424) None Warning: BLR gradient is ill-conditioned Enforcing convergence! Sparseness = 80.112 % Sorting covariates by covariateId, stratumId, and rowId Using cross-validation selector type byPid Performing 10-fold cross-validation [seed = 123] with data partitions of sizes 100 100 100 100 100 100 100 100 100 100 Using 1 thread(s) Starting var = 0.1 Running at Laplace(4.47214) None Grid-point #1 at 0.1 Fold #1 Rep #1 pred log like = -14146.5 Running at Laplace(4.47214) None Grid-point #1 at 0.1 Fold #2 Rep #1 pred log like = -13824.3 Running at Laplace(4.47214) None Grid-point #1 at 0.1 Fold #3 Rep #1 pred log like = -13922.5 Running at Laplace(4.47214) None Grid-point #1 at 0.1 Fold #4 Rep #1 pred log like = -12009.7 Running at Laplace(4.47214) None Grid-point #1 at 0.1 Fold #5 Rep #1 pred log like = -13190.5 Running at Laplace(4.47214) None Grid-point #1 at 0.1 Fold #6 Rep #1 pred log like = -14032 Running at Laplace(4.47214) None Grid-point #1 at 0.1 Fold #7 Rep #1 pred log like = -13053.7 Running at Laplace(4.47214) None Grid-point #1 at 0.1 Fold #8 Rep #1 pred log like = -13911.1 Running at Laplace(4.47214) None Grid-point #1 at 0.1 Fold #9 Rep #1 pred log like = -13560.8 Running at Laplace(4.47214) None Grid-point #1 at 0.1 Fold #10 Rep #1 pred log like = -13052.5 AvgPred = -13470.4 with stdev = 621.67 Completed at 0.1 Next point at 1 with value 0 and continue = 1 search[ 0.1 ] = -13470.4(621.67) Running at Laplace(1.41421) None Grid-point #2 at 1 Fold #1 Rep #1 pred log like = -14146.5 Running at Laplace(1.41421) None Grid-point #2 at 1 Fold #2 Rep #1 pred log like = -13824.3 Running at Laplace(1.41421) None Grid-point #2 at 1 Fold #3 Rep #1 pred log like = -13922.5 Running at Laplace(1.41421) None Grid-point #2 at 1 Fold #4 Rep #1 pred log like = -12009.7 Running at Laplace(1.41421) None Grid-point #2 at 1 Fold #5 Rep #1 pred log like = -13190.5 Running at Laplace(1.41421) None Grid-point #2 at 1 Fold #6 Rep #1 pred log like = -14032 Running at Laplace(1.41421) None Grid-point #2 at 1 Fold #7 Rep #1 pred log like = -13053.7 Running at Laplace(1.41421) None Grid-point #2 at 1 Fold #8 Rep #1 pred log like = -13911.1 Running at Laplace(1.41421) None Grid-point #2 at 1 Fold #9 Rep #1 pred log like = -13560.8 Running at Laplace(1.41421) None Grid-point #2 at 1 Fold #10 Rep #1 pred log like = -13052.4 AvgPred = -13470.4 with stdev = 621.671 Completed at 1 Next point at 0.01 with value 0 and continue = 1 search[ 0.1 ] = -13470.4(621.67) search[ 1 ] = -13470.4(621.671) Running at Laplace(14.1421) None Grid-point #3 at 0.01 Fold #1 Rep #1 pred log like = -14146.5 Running at Laplace(14.1421) None Grid-point #3 at 0.01 Fold #2 Rep #1 pred log like = -13824.3 Running at Laplace(14.1421) None Grid-point #3 at 0.01 Fold #3 Rep #1 pred log like = -13922.5 Running at Laplace(14.1421) None Grid-point #3 at 0.01 Fold #4 Rep #1 pred log like = -12009.7 Running at Laplace(14.1421) None Grid-point #3 at 0.01 Fold #5 Rep #1 pred log like = -13190.3 Running at Laplace(14.1421) None Grid-point #3 at 0.01 Fold #6 Rep #1 pred log like = -14031.9 Running at Laplace(14.1421) None Grid-point #3 at 0.01 Fold #7 Rep #1 pred log like = -13053.7 Running at Laplace(14.1421) None Grid-point #3 at 0.01 Fold #8 Rep #1 pred log like = -13911.1 Running at Laplace(14.1421) None Grid-point #3 at 0.01 Fold #9 Rep #1 pred log like = -13560.8 Running at Laplace(14.1421) None Grid-point #3 at 0.01 Fold #10 Rep #1 pred log like = -13052.6 AvgPred = -13470.3 with stdev = 621.666 Completed at 0.01 Next point at 0.001 with value 0 and continue = 1 search[ 0.01 ] = -13470.3(621.666) search[ 0.1 ] = -13470.4(621.67) search[ 1 ] = -13470.4(621.671) Running at Laplace(44.7214) None Grid-point #4 at 0.001 Fold #1 Rep #1 pred log like = -14146.6 Running at Laplace(44.7214) None Grid-point #4 at 0.001 Fold #2 Rep #1 pred log like = -13824.2 Running at Laplace(44.7214) None Grid-point #4 at 0.001 Fold #3 Rep #1 pred log like = -13922.5 Running at Laplace(44.7214) None Grid-point #4 at 0.001 Fold #4 Rep #1 pred log like = -12009.6 Running at Laplace(44.7214) None Grid-point #4 at 0.001 Fold #5 Rep #1 pred log like = -13189.8 Running at Laplace(44.7214) None Grid-point #4 at 0.001 Fold #6 Rep #1 pred log like = -14031.6 Running at Laplace(44.7214) None Grid-point #4 at 0.001 Fold #7 Rep #1 pred log like = -13053.7 Running at Laplace(44.7214) None Grid-point #4 at 0.001 Fold #8 Rep #1 pred log like = -13911.2 Running at Laplace(44.7214) None Grid-point #4 at 0.001 Fold #9 Rep #1 pred log like = -13561 Running at Laplace(44.7214) None Grid-point #4 at 0.001 Fold #10 Rep #1 pred log like = -13052.9 AvgPred = -13470.3 with stdev = 621.685 Completed at 0.001 Next point at 0.0001 with value 0 and continue = 1 search[ 0.001 ] = -13470.3(621.685) search[ 0.01 ] = -13470.3(621.666) search[ 0.1 ] = -13470.4(621.67) search[ 1 ] = -13470.4(621.671) Running at Laplace(141.421) None Grid-point #5 at 0.0001 Fold #1 Rep #1 pred log like = -14146.6 Running at Laplace(141.421) None Grid-point #5 at 0.0001 Fold #2 Rep #1 pred log like = -13824.4 Running at Laplace(141.421) None Grid-point #5 at 0.0001 Fold #3 Rep #1 pred log like = -13922.3 Running at Laplace(141.421) None Grid-point #5 at 0.0001 Fold #4 Rep #1 pred log like = -12009.6 Running at Laplace(141.421) None Grid-point #5 at 0.0001 Fold #5 Rep #1 pred log like = -13189 Running at Laplace(141.421) None Grid-point #5 at 0.0001 Fold #6 Rep #1 pred log like = -14030.9 Running at Laplace(141.421) None Grid-point #5 at 0.0001 Fold #7 Rep #1 pred log like = -13053.6 Running at Laplace(141.421) None Grid-point #5 at 0.0001 Fold #8 Rep #1 pred log like = -13911.5 Running at Laplace(141.421) None Grid-point #5 at 0.0001 Fold #9 Rep #1 pred log like = -13561 Running at Laplace(141.421) None Grid-point #5 at 0.0001 Fold #10 Rep #1 pred log like = -13053.1 AvgPred = -13470.2 with stdev = 621.656 Completed at 0.0001 Next point at 1e-05 with value 0 and continue = 1 search[ 0.0001 ] = -13470.2(621.656) search[ 0.001 ] = -13470.3(621.685) search[ 0.01 ] = -13470.3(621.666) search[ 0.1 ] = -13470.4(621.67) search[ 1 ] = -13470.4(621.671) Running at Laplace(447.214) None Grid-point #6 at 1e-05 Fold #1 Rep #1 pred log like = -14146.6 Running at Laplace(447.214) None Grid-point #6 at 1e-05 Fold #2 Rep #1 pred log like = -13825.3 Running at Laplace(447.214) None Grid-point #6 at 1e-05 Fold #3 Rep #1 pred log like = -13922.8 Running at Laplace(447.214) None Grid-point #6 at 1e-05 Fold #4 Rep #1 pred log like = -12011.1 Running at Laplace(447.214) None Grid-point #6 at 1e-05 Fold #5 Rep #1 pred log like = -13189.7 Running at Laplace(447.214) None Grid-point #6 at 1e-05 Fold #6 Rep #1 pred log like = -14031.3 Running at Laplace(447.214) None Grid-point #6 at 1e-05 Fold #7 Rep #1 pred log like = -13054.9 Running at Laplace(447.214) None Grid-point #6 at 1e-05 Fold #8 Rep #1 pred log like = -13912.9 Running at Laplace(447.214) None Grid-point #6 at 1e-05 Fold #9 Rep #1 pred log like = -13562 Running at Laplace(447.214) None Grid-point #6 at 1e-05 Fold #10 Rep #1 pred log like = -13054.1 AvgPred = -13471.1 with stdev = 621.373 Completed at 1e-05 Next point at 0.0125877 with value -13470.2 and continue = 0 search[ 1e-05 ] = -13471.1(621.373) search[ 0.0001 ] = -13470.2(621.656) search[ 0.001 ] = -13470.3(621.685) search[ 0.01 ] = -13470.3(621.666) search[ 0.1 ] = -13470.4(621.67) search[ 1 ] = -13470.4(621.671) Maximum predicted log likelihood (-13470.2) estimated at: 0.0125877 (variance) 12.605 (lambda) Fitting model at optimal hyperparameter Using prior: Laplace(12.605) None Sparseness = 80.112 % Sorting outcomes by stratumId, time (descending), y and rowId Sorting covariates by covariateId, stratumId, time (descending), y, and rowId Sparseness = 99.09 % Sorting covariates by covariateId and rowId [ FAIL 0 | WARN 0 | SKIP 36 | PASS 316 ] ══ Skipped tests (36) ══════════════════════════════════════════════════════════ • Current not working (1): 'test-offsetPoisson.R:41:5' • GPU not available (6): 'test-gpucox.R:12:5', 'test-gpucox.R:37:5', 'test-gpucox.R:63:5', 'test-gpucox.R:88:5', 'test-gpucox.R:118:5', 'test-timevaryingCox.R:8:5' • Needs debugging (1): 'test-profileLikelihood.R:126:2' • On CRAN (17): 'test-bootstrap.R:58:5', 'test-bootstrap.R:110:5', 'test-bootstrap.R:155:5', 'test-bootstrap.R:185:5', 'test-bootstrap.R:243:5', 'test-bootstrap.R:301:5', 'test-cv.R:37:5', 'test-cv.R:110:5', 'test-cv.R:148:5', 'test-dataConversionStratified.R:113:3', 'test-largeBernoulli.R:26:5', 'test-largeBernoulli.R:73:5', 'test-outOfSample.R:7:5', 'test-parameterizedPriors.R:88:5', 'test-smallExactCLR.R:9:5', 'test-smallExactCLR.R:32:5', 'test-weighted_cv.R:5:5' • empty test (6): 'test-believedBroken.R:75:1', 'test-cprViaSql.R:5:1', 'test-multitypePoisson.R:113:1', 'test-multitypePoisson.R:146:1', 'test-sqlConstructor.R:101:1', 'test-weighting.R:259:1' • for debugging purposes; simulation takes too long (1): 'test-floatingPoint.R:57:5' • residuals not yet implemented (4): 'test-residuals.R:7:5', 'test-residuals.R:31:5', 'test-residuals.R:53:5', 'test-residuals.R:85:5' [ FAIL 0 | WARN 0 | SKIP 36 | PASS 316 ] > > proc.time() user system elapsed 20.01 4.76 24.32