R Under development (unstable) (2025-07-17 r88424 ucrt) -- "Unsuffered Consequences" Copyright (C) 2025 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > test_check("Cyclops") Loading required package: Cyclops Sorting outcomes by stratumId and rowId Sorting covariates by covariateId, stratumId, and rowId Sparseness = 99.02 % Sorting covariates by covariateId and rowId Using cross-validation selector type byRow Performing 10-fold cross-validation [seed = 1752845215] with data partitions of sizes 100 100 100 100 100 100 100 100 100 100 Using 1 thread(s) Starting var = 0.0098 (default) Running at Laplace(14.2857) None Grid-point #1 at 0.0098 Fold #1 Rep #1 pred log like = -31.6615 Running at Laplace(14.2857) None Grid-point #1 at 0.0098 Fold #2 Rep #1 pred log like = -35.4391 Running at Laplace(14.2857) None Grid-point #1 at 0.0098 Fold #3 Rep #1 pred log like = -18.8628 Running at Laplace(14.2857) None Grid-point #1 at 0.0098 Fold #4 Rep #1 pred log like = -39.2725 Running at Laplace(14.2857) None Grid-point #1 at 0.0098 Fold #5 Rep #1 pred log like = -33.5434 Running at Laplace(14.2857) None Grid-point #1 at 0.0098 Fold #6 Rep #1 pred log like = -33.5434 Running at Laplace(14.2857) None Grid-point #1 at 0.0098 Fold #7 Rep #1 pred log like = -29.7932 Running at Laplace(14.2857) None Grid-point #1 at 0.0098 Fold #8 Rep #1 pred log like = -22.4539 Running at Laplace(14.2857) None Grid-point #1 at 0.0098 Fold #9 Rep #1 pred log like = -26.097 Running at Laplace(14.2857) None Grid-point #1 at 0.0098 Fold #10 Rep #1 pred log like = -33.5434 Running at Laplace(14.2857) None Grid-point #1 at 0.0098 Fold #1 Rep #2 pred log like = -27.9384 Running at Laplace(14.2857) None Grid-point #1 at 0.0098 Fold #2 Rep #2 pred log like = -31.6615 Running at Laplace(14.2857) None Grid-point #1 at 0.0098 Fold #3 Rep #2 pred log like = -29.7932 Running at Laplace(14.2857) None Grid-point #1 at 0.0098 Fold #4 Rep #2 pred log like = -22.4539 Running at Laplace(14.2857) None Grid-point #1 at 0.0098 Fold #5 Rep #2 pred log like = -35.4391 Running at Laplace(14.2857) None Grid-point #1 at 0.0098 Fold #6 Rep #2 pred log like = -24.2689 Running at Laplace(14.2857) None Grid-point #1 at 0.0098 Fold #7 Rep #2 pred log like = -43.1628 Running at Laplace(14.2857) None Grid-point #1 at 0.0098 Fold #8 Rep #2 pred log like = -27.9384 Running at Laplace(14.2857) None Grid-point #1 at 0.0098 Fold #9 Rep #2 pred log like = -31.6615 Running at Laplace(14.2857) None Grid-point #1 at 0.0098 Fold #10 Rep #2 pred log like = -29.7932 Running at Laplace(14.2857) None Grid-point #1 at 0.0098 Fold #1 Rep #3 pred log like = -33.5434 Running at Laplace(14.2857) None Grid-point #1 at 0.0098 Fold #2 Rep #3 pred log like = -39.2725 Running at Laplace(14.2857) None Grid-point #1 at 0.0098 Fold #3 Rep #3 pred log like = -29.7932 Running at Laplace(14.2857) None Grid-point #1 at 0.0098 Fold #4 Rep #3 pred log like = -26.097 Running at Laplace(14.2857) None Grid-point #1 at 0.0098 Fold #5 Rep #3 pred log like = -27.9384 Running at Laplace(14.2857) None Grid-point #1 at 0.0098 Fold #6 Rep #3 pred log like = -29.7932 Running at Laplace(14.2857) None Grid-point #1 at 0.0098 Fold #7 Rep #3 pred log like = -41.2105 Running at Laplace(14.2857) None Grid-point #1 at 0.0098 Fold #8 Rep #3 pred log like = -27.9384 Running at Laplace(14.2857) None Grid-point #1 at 0.0098 Fold #9 Rep #3 pred log like = -27.9384 Running at Laplace(14.2857) None Grid-point #1 at 0.0098 Fold #10 Rep #3 pred log like = -20.6519 Running at Laplace(14.2857) None Grid-point #1 at 0.0098 Fold #1 Rep #4 pred log like = -31.6615 Running at Laplace(14.2857) None Grid-point #1 at 0.0098 Fold #2 Rep #4 pred log like = -27.9384 Running at Laplace(14.2857) None Grid-point #1 at 0.0098 Fold #3 Rep #4 pred log like = -35.4391 Running at Laplace(14.2857) None Grid-point #1 at 0.0098 Fold #4 Rep #4 pred log like = -18.8628 Running at Laplace(14.2857) None Grid-point #1 at 0.0098 Fold #5 Rep #4 pred log like = -31.6615 Running at Laplace(14.2857) None Grid-point #1 at 0.0098 Fold #6 Rep #4 pred log like = -31.6615 Running at Laplace(14.2857) None Grid-point #1 at 0.0098 Fold #7 Rep #4 pred log like = -39.2725 Running at Laplace(14.2857) None Grid-point #1 at 0.0098 Fold #8 Rep #4 pred log like = -33.5434 Running at Laplace(14.2857) None Grid-point #1 at 0.0098 Fold #9 Rep #4 pred log like = -31.6615 Running at Laplace(14.2857) None Grid-point #1 at 0.0098 Fold #10 Rep #4 pred log like = -22.4539 AvgPred = -30.4163 with stdev = 5.7361 Completed at 0.0098 Next point at 0.098 with value 0 and continue = 1 search[ 0.0098 ] = -30.4163(5.7361) Running at Laplace(4.51754) None Grid-point #2 at 0.098 Fold #1 Rep #1 pred log like = -31.6615 Running at Laplace(4.51754) None Grid-point #2 at 0.098 Fold #2 Rep #1 pred log like = -35.4391 Running at Laplace(4.51754) None Grid-point #2 at 0.098 Fold #3 Rep #1 pred log like = -18.8628 Running at Laplace(4.51754) None Grid-point #2 at 0.098 Fold #4 Rep #1 pred log like = -39.2725 Running at Laplace(4.51754) None Grid-point #2 at 0.098 Fold #5 Rep #1 pred log like = -33.5434 Running at Laplace(4.51754) None Grid-point #2 at 0.098 Fold #6 Rep #1 pred log like = -33.5434 Running at Laplace(4.51754) None Grid-point #2 at 0.098 Fold #7 Rep #1 pred log like = -29.7932 Running at Laplace(4.51754) None Grid-point #2 at 0.098 Fold #8 Rep #1 pred log like = -22.4539 Running at Laplace(4.51754) None Grid-point #2 at 0.098 Fold #9 Rep #1 pred log like = -26.097 Running at Laplace(4.51754) None Grid-point #2 at 0.098 Fold #10 Rep #1 pred log like = -33.5434 Running at Laplace(4.51754) None Grid-point #2 at 0.098 Fold #1 Rep #2 pred log like = -27.9384 Running at Laplace(4.51754) None Grid-point #2 at 0.098 Fold #2 Rep #2 pred log like = -31.6615 Running at Laplace(4.51754) None Grid-point #2 at 0.098 Fold #3 Rep #2 pred log like = -29.7932 Running at Laplace(4.51754) None Grid-point #2 at 0.098 Fold #4 Rep #2 pred log like = -22.4539 Running at Laplace(4.51754) None Grid-point #2 at 0.098 Fold #5 Rep #2 pred log like = -35.4391 Running at Laplace(4.51754) None Grid-point #2 at 0.098 Fold #6 Rep #2 pred log like = -24.2689 Running at Laplace(4.51754) None Grid-point #2 at 0.098 Fold #7 Rep #2 pred log like = -43.1628 Running at Laplace(4.51754) None Grid-point #2 at 0.098 Fold #8 Rep #2 pred log like = -27.9384 Running at Laplace(4.51754) None Grid-point #2 at 0.098 Fold #9 Rep #2 pred log like = -31.6615 Running at Laplace(4.51754) None Grid-point #2 at 0.098 Fold #10 Rep #2 pred log like = -29.7932 Running at Laplace(4.51754) None Grid-point #2 at 0.098 Fold #1 Rep #3 pred log like = -33.5434 Running at Laplace(4.51754) None Grid-point #2 at 0.098 Fold #2 Rep #3 pred log like = -39.2725 Running at Laplace(4.51754) None Grid-point #2 at 0.098 Fold #3 Rep #3 pred log like = -29.7932 Running at Laplace(4.51754) None Grid-point #2 at 0.098 Fold #4 Rep #3 pred log like = -26.097 Running at Laplace(4.51754) None Grid-point #2 at 0.098 Fold #5 Rep #3 pred log like = -27.9384 Running at Laplace(4.51754) None Grid-point #2 at 0.098 Fold #6 Rep #3 pred log like = -29.7932 Running at Laplace(4.51754) None Grid-point #2 at 0.098 Fold #7 Rep #3 pred log like = -41.2105 Running at Laplace(4.51754) None Grid-point #2 at 0.098 Fold #8 Rep #3 pred log like = -27.9384 Running at Laplace(4.51754) None Grid-point #2 at 0.098 Fold #9 Rep #3 pred log like = -27.9384 Running at Laplace(4.51754) None Grid-point #2 at 0.098 Fold #10 Rep #3 pred log like = -20.6519 Running at Laplace(4.51754) None Grid-point #2 at 0.098 Fold #1 Rep #4 pred log like = -31.6615 Running at Laplace(4.51754) None Grid-point #2 at 0.098 Fold #2 Rep #4 pred log like = -27.9384 Running at Laplace(4.51754) None Grid-point #2 at 0.098 Fold #3 Rep #4 pred log like = -35.4391 Running at Laplace(4.51754) None Grid-point #2 at 0.098 Fold #4 Rep #4 pred log like = -18.8628 Running at Laplace(4.51754) None Grid-point #2 at 0.098 Fold #5 Rep #4 pred log like = -31.6615 Running at Laplace(4.51754) None Grid-point #2 at 0.098 Fold #6 Rep #4 pred log like = -31.6615 Running at Laplace(4.51754) None Grid-point #2 at 0.098 Fold #7 Rep #4 pred log like = -39.2725 Running at Laplace(4.51754) None Grid-point #2 at 0.098 Fold #8 Rep #4 pred log like = -33.5434 Running at Laplace(4.51754) None Grid-point #2 at 0.098 Fold #9 Rep #4 pred log like = -31.6615 Running at Laplace(4.51754) None Grid-point #2 at 0.098 Fold #10 Rep #4 pred log like = -22.4539 AvgPred = -30.4163 with stdev = 5.7361 Completed at 0.098 Next point at 0.98 with value 0 and continue = 1 search[ 0.0098 ] = -30.4163(5.7361) search[ 0.098 ] = -30.4163(5.7361) Running at Laplace(1.42857) None Grid-point #3 at 0.98 Fold #1 Rep #1 pred log like = -31.6472 Running at Laplace(1.42857) None Grid-point #3 at 0.98 Fold #2 Rep #1 pred log like = -35.4391 Running at Laplace(1.42857) None Grid-point #3 at 0.98 Fold #3 Rep #1 pred log like = -18.9766 Running at Laplace(1.42857) None Grid-point #3 at 0.98 Fold #4 Rep #1 pred log like = -39.2725 Running at Laplace(1.42857) None Grid-point #3 at 0.98 Fold #5 Rep #1 pred log like = -33.7518 Running at Laplace(1.42857) None Grid-point #3 at 0.98 Fold #6 Rep #1 pred log like = -33.5295 Running at Laplace(1.42857) None Grid-point #3 at 0.98 Fold #7 Rep #1 pred log like = -29.7742 Running at Laplace(1.42857) None Grid-point #3 at 0.98 Fold #8 Rep #1 pred log like = -22.868 Running at Laplace(1.42857) None Grid-point #3 at 0.98 Fold #9 Rep #1 pred log like = -26.0811 Running at Laplace(1.42857) None Grid-point #3 at 0.98 Fold #10 Rep #1 pred log like = -33.5295 Running at Laplace(1.42857) None Grid-point #3 at 0.98 Fold #1 Rep #2 pred log like = -27.9238 Running at Laplace(1.42857) None Grid-point #3 at 0.98 Fold #2 Rep #2 pred log like = -31.6615 Running at Laplace(1.42857) None Grid-point #3 at 0.98 Fold #3 Rep #2 pred log like = -29.7742 Running at Laplace(1.42857) None Grid-point #3 at 0.98 Fold #4 Rep #2 pred log like = -22.4342 Running at Laplace(1.42857) None Grid-point #3 at 0.98 Fold #5 Rep #2 pred log like = -35.4116 Running at Laplace(1.42857) None Grid-point #3 at 0.98 Fold #6 Rep #2 pred log like = -24.2689 Running at Laplace(1.42857) None Grid-point #3 at 0.98 Fold #7 Rep #2 pred log like = -43.2218 Running at Laplace(1.42857) None Grid-point #3 at 0.98 Fold #8 Rep #2 pred log like = -28.1707 Running at Laplace(1.42857) None Grid-point #3 at 0.98 Fold #9 Rep #2 pred log like = -31.6472 Running at Laplace(1.42857) None Grid-point #3 at 0.98 Fold #10 Rep #2 pred log like = -29.7742 Running at Laplace(1.42857) None Grid-point #3 at 0.98 Fold #1 Rep #3 pred log like = -33.7518 Running at Laplace(1.42857) None Grid-point #3 at 0.98 Fold #2 Rep #3 pred log like = -39.2725 Running at Laplace(1.42857) None Grid-point #3 at 0.98 Fold #3 Rep #3 pred log like = -30.0884 Running at Laplace(1.42857) None Grid-point #3 at 0.98 Fold #4 Rep #3 pred log like = -26.0825 Running at Laplace(1.42857) None Grid-point #3 at 0.98 Fold #5 Rep #3 pred log like = -27.9384 Running at Laplace(1.42857) None Grid-point #3 at 0.98 Fold #6 Rep #3 pred log like = -29.7932 Running at Laplace(1.42857) None Grid-point #3 at 0.98 Fold #7 Rep #3 pred log like = -41.2105 Running at Laplace(1.42857) None Grid-point #3 at 0.98 Fold #8 Rep #3 pred log like = -27.9066 Running at Laplace(1.42857) None Grid-point #3 at 0.98 Fold #9 Rep #3 pred log like = -27.937 Running at Laplace(1.42857) None Grid-point #3 at 0.98 Fold #10 Rep #3 pred log like = -20.6535 Running at Laplace(1.42857) None Grid-point #3 at 0.98 Fold #1 Rep #4 pred log like = -31.6472 Running at Laplace(1.42857) None Grid-point #3 at 0.98 Fold #2 Rep #4 pred log like = -27.9189 Running at Laplace(1.42857) None Grid-point #3 at 0.98 Fold #3 Rep #4 pred log like = -35.4257 Running at Laplace(1.42857) None Grid-point #3 at 0.98 Fold #4 Rep #4 pred log like = -18.833 Running at Laplace(1.42857) None Grid-point #3 at 0.98 Fold #5 Rep #4 pred log like = -31.8159 Running at Laplace(1.42857) None Grid-point #3 at 0.98 Fold #6 Rep #4 pred log like = -32.0208 Running at Laplace(1.42857) None Grid-point #3 at 0.98 Fold #7 Rep #4 pred log like = -39.2725 Running at Laplace(1.42857) None Grid-point #3 at 0.98 Fold #8 Rep #4 pred log like = -33.5871 Running at Laplace(1.42857) None Grid-point #3 at 0.98 Fold #9 Rep #4 pred log like = -31.6432 Running at Laplace(1.42857) None Grid-point #3 at 0.98 Fold #10 Rep #4 pred log like = -22.4489 AvgPred = -30.4601 with stdev = 5.72826 Completed at 0.98 Next point at 0.0309903 with value -30.4109 and continue = 0 search[ 0.0098 ] = -30.4163(5.7361) search[ 0.098 ] = -30.4163(5.7361) search[ 0.98 ] = -30.4601(5.72826) Maximum predicted log likelihood (-30.4109) estimated at: 0.0309903 (variance) 8.03345 (lambda) Fitting model at optimal hyperparameter Using prior: Laplace(8.03345) None Sorting outcomes by stratumId and rowId Sorting covariates by covariateId, stratumId, and rowId Sorting outcomes by stratumId, time (descending), y and rowId Sorting covariates by covariateId, stratumId, time (descending), y, and rowId Sorting outcomes by stratumId, time (descending), y and rowId Sorting covariates by covariateId, stratumId, time (descending), y, and rowId Sorting outcomes by stratumId, time (descending), y and rowId Sorting covariates by covariateId, stratumId, time (descending), y, and rowId Sparseness = 76.22 % Sorting covariates by covariateId and rowId Sparseness = 98.96 % Sorting covariates by covariateId and rowId Sorting covariates by covariateId and rowId Sorting covariates by covariateId and rowId Sparseness = 98.96 % Sorting outcomes by rowId Sorting covariates by covariateId and rowId Sparseness = 76.15 % Sorting covariates by covariateId and rowId Sparseness = 75.695 % Sorting covariates by covariateId and rowId Sparseness = 75.9 % Sorting covariates by covariateId and rowId Sparseness = 75.3 % Sorting covariates by covariateId and rowId Sparseness = 76.4 % Sorting covariates by covariateId and rowId Analysis took 0.0482 secs ( 0.00155 ) Fitting model using clogit Analysis took 0.188 secs Sparseness = 76.4 % Sorting outcomes by stratumId, time (descending), y and rowId Sorting covariates by covariateId, stratumId, time (descending), y, and rowId Sorting outcomes by stratumId, time (descending), y and rowId Sorting covariates by covariateId, stratumId, time (descending), y, and rowId Sorting outcomes by stratumId, time (descending), y and rowId Sorting covariates by covariateId, stratumId, time (descending), y, and rowId Analysis took 0.0181 secs ( 0.000305 ) Fitting model using coxpht Analysis took 0.0142 secs Using prior: None log post: -153.562 (-153.562 + 0) (iter:1, conv: 1.49516) log post: -140.336 (-140.336 + 0) (iter:2, conv: 0.417984) log post: -132.01 (-132.01 + 0) (iter:3, conv: 0.261069) log post: -126.375 (-126.375 + 0) (iter:4, conv: 0.183922) log post: -122.375 (-122.375 + 0) (iter:5, conv: 0.136891) log post: -119.439 (-119.439 + 0) (iter:6, conv: 0.106878) log post: -117.228 (-117.228 + 0) (iter:7, conv: 0.0862994) log post: -115.53 (-115.53 + 0) (iter:8, conv: 0.071395) log post: -114.206 (-114.206 + 0) (iter:9, conv: 0.060154) log post: -113.159 (-113.159 + 0) (iter:10, conv: 0.051408) log post: -112.323 (-112.323 + 0) (iter:11, conv: 0.0444337) log post: -111.649 (-111.649 + 0) (iter:12, conv: 0.0387604) log post: -111.102 (-111.102 + 0) (iter:13, conv: 0.0340695) log post: -110.655 (-110.655 + 0) (iter:14, conv: 0.0301375) log post: -110.288 (-110.288 + 0) (iter:15, conv: 0.0268034) log post: -109.985 (-109.985 + 0) (iter:16, conv: 0.0239483) log post: -109.733 (-109.733 + 0) (iter:17, conv: 0.0214827) log post: -109.524 (-109.524 + 0) (iter:18, conv: 0.0193378) log post: -109.349 (-109.349 + 0) (iter:19, conv: 0.0174597) log post: -109.202 (-109.202 + 0) (iter:20, conv: 0.0158061) log post: -109.079 (-109.079 + 0) (iter:21, conv: 0.0143429) log post: -108.976 (-108.976 + 0) (iter:22, conv: 0.0130423) log post: -108.889 (-108.889 + 0) (iter:23, conv: 0.0118819) log post: -108.815 (-108.815 + 0) (iter:24, conv: 0.0108428) log post: -108.752 (-108.752 + 0) (iter:25, conv: 0.00990905) log post: -108.7 (-108.7 + 0) (iter:26, conv: 0.00906454) log post: -108.655 (-108.655 + 0) (iter:27, conv: 0.00830244) log post: -108.616 (-108.616 + 0) (iter:28, conv: 0.00761308) log post: -108.584 (-108.584 + 0) (iter:29, conv: 0.00698817) log post: -108.556 (-108.556 + 0) (iter:30, conv: 0.00642058) log post: -108.533 (-108.533 + 0) (iter:31, conv: 0.00590412) log post: -108.512 (-108.512 + 0) (iter:32, conv: 0.00543344) log post: -108.495 (-108.495 + 0) (iter:33, conv: 0.00500383) log post: -108.48 (-108.48 + 0) (iter:34, conv: 0.00461118) log post: -108.468 (-108.468 + 0) (iter:35, conv: 0.00425187) log post: -108.457 (-108.457 + 0) (iter:36, conv: 0.00392269) log post: -108.448 (-108.448 + 0) (iter:37, conv: 0.00362081) log post: -108.44 (-108.44 + 0) (iter:38, conv: 0.00334369) log post: -108.433 (-108.433 + 0) (iter:39, conv: 0.00308909) log post: -108.427 (-108.427 + 0) (iter:40, conv: 0.00285498) log post: -108.422 (-108.422 + 0) (iter:41, conv: 0.00263955) log post: -108.418 (-108.418 + 0) (iter:42, conv: 0.00244118) log post: -108.415 (-108.415 + 0) (iter:43, conv: 0.0022584) log post: -108.411 (-108.411 + 0) (iter:44, conv: 0.00208989) log post: -108.409 (-108.409 + 0) (iter:45, conv: 0.00193445) log post: -108.406 (-108.406 + 0) (iter:46, conv: 0.001791) log post: -108.404 (-108.404 + 0) (iter:47, conv: 0.00165855) log post: -108.403 (-108.403 + 0) (iter:48, conv: 0.00153621) log post: -108.401 (-108.401 + 0) (iter:49, conv: 0.00142316) log post: -108.4 (-108.4 + 0) (iter:50, conv: 0.00131866) log post: -108.399 (-108.399 + 0) (iter:51, conv: 0.00122202) log post: -108.398 (-108.398 + 0) (iter:52, conv: 0.00113264) log post: -108.397 (-108.397 + 0) (iter:53, conv: 0.00104994) log post: -108.396 (-108.396 + 0) (iter:54, conv: 0.000973398) log post: -108.396 (-108.396 + 0) (iter:55, conv: 0.000902544) log post: -108.395 (-108.395 + 0) (iter:56, conv: 0.000836938) log post: -108.395 (-108.395 + 0) (iter:57, conv: 0.00077618) log post: -108.394 (-108.394 + 0) (iter:58, conv: 0.0007199) log post: -108.394 (-108.394 + 0) (iter:59, conv: 0.000667758) log post: -108.394 (-108.394 + 0) (iter:60, conv: 0.000619443) log post: -108.393 (-108.393 + 0) (iter:61, conv: 0.000574666) log post: -108.393 (-108.393 + 0) (iter:62, conv: 0.000533163) log post: -108.393 (-108.393 + 0) (iter:63, conv: 0.000494688) log post: -108.393 (-108.393 + 0) (iter:64, conv: 0.000459018) log post: -108.393 (-108.393 + 0) (iter:65, conv: 0.000425942) log post: -108.393 (-108.393 + 0) (iter:66, conv: 0.000395271) log post: -108.393 (-108.393 + 0) (iter:67, conv: 0.000366825) log post: -108.393 (-108.393 + 0) (iter:68, conv: 0.000340441) log post: -108.392 (-108.392 + 0) (iter:69, conv: 0.000315968) log post: -108.392 (-108.392 + 0) (iter:70, conv: 0.000293265) log post: -108.392 (-108.392 + 0) (iter:71, conv: 0.000272203) log post: -108.392 (-108.392 + 0) (iter:72, conv: 0.000252661) log post: -108.392 (-108.392 + 0) (iter:73, conv: 0.00023453) log post: -108.392 (-108.392 + 0) (iter:74, conv: 0.000217706) log post: -108.392 (-108.392 + 0) (iter:75, conv: 0.000202094) log post: -108.392 (-108.392 + 0) (iter:76, conv: 0.000187606) log post: -108.392 (-108.392 + 0) (iter:77, conv: 0.00017416) log post: -108.392 (-108.392 + 0) (iter:78, conv: 0.000161682) log post: -108.392 (-108.392 + 0) (iter:79, conv: 0.000150101) log post: -108.392 (-108.392 + 0) (iter:80, conv: 0.000139351) log post: -108.392 (-108.392 + 0) (iter:81, conv: 0.000129374) log post: -108.392 (-108.392 + 0) (iter:82, conv: 0.000120112) log post: -108.392 (-108.392 + 0) (iter:83, conv: 0.000111516) log post: -108.392 (-108.392 + 0) (iter:84, conv: 0.000103536) log post: -108.392 (-108.392 + 0) (iter:85, conv: 9.6128e-05) log post: -108.392 (-108.392 + 0) (iter:86, conv: 8.92512e-05) log post: -108.392 (-108.392 + 0) (iter:87, conv: 8.28673e-05) log post: -108.392 (-108.392 + 0) (iter:88, conv: 7.69408e-05) log post: -108.392 (-108.392 + 0) (iter:89, conv: 7.14387e-05) log post: -108.392 (-108.392 + 0) (iter:90, conv: 6.63307e-05) log post: -108.392 (-108.392 + 0) (iter:91, conv: 6.15884e-05) log post: -108.392 (-108.392 + 0) (iter:92, conv: 5.71856e-05) log post: -108.392 (-108.392 + 0) (iter:93, conv: 5.30979e-05) log post: -108.392 (-108.392 + 0) (iter:94, conv: 4.93026e-05) log post: -108.392 (-108.392 + 0) (iter:95, conv: 4.5779e-05) log post: -108.392 (-108.392 + 0) (iter:96, conv: 4.25074e-05) log post: -108.392 (-108.392 + 0) (iter:97, conv: 3.94698e-05) log post: -108.392 (-108.392 + 0) (iter:98, conv: 3.66494e-05) log post: -108.392 (-108.392 + 0) (iter:99, conv: 3.40307e-05) log post: -108.392 (-108.392 + 0) (iter:100, conv: 3.15993e-05) log post: -108.392 (-108.392 + 0) (iter:101, conv: 2.93417e-05) log post: -108.392 (-108.392 + 0) (iter:102, conv: 2.72454e-05) log post: -108.392 (-108.392 + 0) (iter:103, conv: 2.5299e-05) log post: -108.392 (-108.392 + 0) (iter:104, conv: 2.34918e-05) log post: -108.392 (-108.392 + 0) (iter:105, conv: 2.18137e-05) log post: -108.392 (-108.392 + 0) (iter:106, conv: 2.02555e-05) log post: -108.392 (-108.392 + 0) (iter:107, conv: 1.88087e-05) log post: -108.392 (-108.392 + 0) (iter:108, conv: 1.74652e-05) log post: -108.392 (-108.392 + 0) (iter:109, conv: 1.62178e-05) log post: -108.392 (-108.392 + 0) (iter:110, conv: 1.50595e-05) log post: -108.392 (-108.392 + 0) (iter:111, conv: 1.39839e-05) log post: -108.392 (-108.392 + 0) (iter:112, conv: 1.29852e-05) log post: -108.392 (-108.392 + 0) (iter:113, conv: 1.20578e-05) log post: -108.392 (-108.392 + 0) (iter:114, conv: 1.11967e-05) log post: -108.392 (-108.392 + 0) (iter:115, conv: 1.0397e-05) log post: -108.392 (-108.392 + 0) (iter:116, conv: 9.65454e-06) log post: -108.392 (-108.392 + 0) (iter:117, conv: 8.96507e-06) log post: -108.392 (-108.392 + 0) (iter:118, conv: 8.32486e-06) log post: -108.392 (-108.392 + 0) (iter:119, conv: 7.73036e-06) log post: -108.392 (-108.392 + 0) (iter:120, conv: 7.17833e-06) log post: -108.392 (-108.392 + 0) (iter:121, conv: 6.66573e-06) log post: -108.392 (-108.392 + 0) (iter:122, conv: 6.18973e-06) log post: -108.392 (-108.392 + 0) (iter:123, conv: 5.74773e-06) log post: -108.392 (-108.392 + 0) (iter:124, conv: 5.3373e-06) log post: -108.392 (-108.392 + 0) (iter:125, conv: 4.95617e-06) log post: -108.392 (-108.392 + 0) (iter:126, conv: 4.60227e-06) log post: -108.392 (-108.392 + 0) (iter:127, conv: 4.27364e-06) log post: -108.392 (-108.392 + 0) (iter:128, conv: 3.96847e-06) log post: -108.392 (-108.392 + 0) (iter:129, conv: 3.6851e-06) log post: -108.392 (-108.392 + 0) (iter:130, conv: 3.42197e-06) log post: -108.392 (-108.392 + 0) (iter:131, conv: 3.17762e-06) log post: -108.392 (-108.392 + 0) (iter:132, conv: 2.95073e-06) log post: -108.392 (-108.392 + 0) (iter:133, conv: 2.74003e-06) log post: -108.392 (-108.392 + 0) (iter:134, conv: 2.54439e-06) log post: -108.392 (-108.392 + 0) (iter:135, conv: 2.36271e-06) log post: -108.392 (-108.392 + 0) (iter:136, conv: 2.194e-06) log post: -108.392 (-108.392 + 0) (iter:137, conv: 2.03734e-06) log post: -108.392 (-108.392 + 0) (iter:138, conv: 1.89187e-06) log post: -108.392 (-108.392 + 0) (iter:139, conv: 1.75679e-06) log post: -108.392 (-108.392 + 0) (iter:140, conv: 1.63135e-06) log post: -108.392 (-108.392 + 0) (iter:141, conv: 1.51487e-06) log post: -108.392 (-108.392 + 0) (iter:142, conv: 1.4067e-06) log post: -108.392 (-108.392 + 0) (iter:143, conv: 1.30626e-06) log post: -108.392 (-108.392 + 0) (iter:144, conv: 1.21299e-06) log post: -108.392 (-108.392 + 0) (iter:145, conv: 1.12638e-06) log post: -108.392 (-108.392 + 0) (iter:146, conv: 1.04596e-06) log post: -108.392 (-108.392 + 0) (iter:147, conv: 9.71275e-07) Reached convergence criterion Using prior: Laplace(1.41421) None KKT Swindle count 1, activeSet size = 1 update time: 3.27e-05 in 1 iterations. Inactive set violations: 1 KKT Swindle count 2, activeSet size = 2 update time: 0.0058726 in 134 iterations. Sparseness = 99.012 % Sorting outcomes by stratumId, time (descending), y and rowId Sorting covariates by covariateId, stratumId, time (descending), y, and rowId Sorting covariates by covariateId, stratumId, time (descending), y, and rowId Sorting covariates by covariateId, stratumId, time (descending), y, and rowId Generating censoring weights Generating censoring weights Sorting outcomes by stratumId, time (descending), y and rowId Sorting covariates by covariateId, stratumId, time (descending), y, and rowId Sorting outcomes by stratumId, time (descending), y and rowId Sorting covariates by covariateId, stratumId, time (descending), y, and rowId Using cross-validation selector type byRow Performing 10-fold cross-validation [seed = 1752845230] with data partitions of sizes 1 1 1 1 1 1 1 1 1 0 Using 1 thread(s) Starting var = 0.333333 (default) Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #1 Rep #1 pred log like = 106.597 Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #2 Rep #1 pred log like = 44.5696 Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #3 Rep #1 pred log like = 24.9454 Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #4 Rep #1 pred log like = 14.674 Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #5 Rep #1 pred log like = 59.4912 Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #6 Rep #1 pred log like = 112.869 Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #7 Rep #1 pred log like = 33.6249 Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #8 Rep #1 pred log like = 79.8291 Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #9 Rep #1 pred log like = 20.3427 Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #10 Rep #1 pred log like = 0 AvgPred = 49.6943 with stdev = 36.9967 Completed at 0.333333 Next point at 3.33333 with value 0 and continue = 1 search[ 0.333333 ] = 49.6943(36.9967) Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #1 Rep #1 pred log like = 106.149 Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #2 Rep #1 pred log like = 44.6337 Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #3 Rep #1 pred log like = 24.7929 Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #4 Rep #1 pred log like = 14.5878 Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #5 Rep #1 pred log like = 57.342 Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #6 Rep #1 pred log like = 110.219 Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #7 Rep #1 pred log like = 32.889 Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #8 Rep #1 pred log like = 79.7708 Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #9 Rep #1 pred log like = 20.3443 Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #10 Rep #1 pred log like = 0 AvgPred = 49.0729 with stdev = 36.4707 Completed at 3.33333 Next point at 0.0333333 with value 0 and continue = 1 search[ 0.333333 ] = 49.6943(36.9967) search[ 3.33333 ] = 49.0729(36.4707) Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #1 Rep #1 pred log like = 107.806 Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #2 Rep #1 pred log like = 43.169 Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #3 Rep #1 pred log like = 25.0614 Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #4 Rep #1 pred log like = 15.7525 Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #5 Rep #1 pred log like = 60.6085 Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #6 Rep #1 pred log like = 118.443 Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #7 Rep #1 pred log like = 34.0061 Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #8 Rep #1 pred log like = 79.6334 Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #9 Rep #1 pred log like = 20.3273 Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #10 Rep #1 pred log like = 0 AvgPred = 50.4807 with stdev = 38.0685 Completed at 0.0333333 Next point at 0.00333333 with value 0 and continue = 1 search[ 0.0333333 ] = 50.4807(38.0685) search[ 0.333333 ] = 49.6943(36.9967) search[ 3.33333 ] = 49.0729(36.4707) Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #1 Rep #1 pred log like = 106.001 Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #2 Rep #1 pred log like = 42.498 Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #3 Rep #1 pred log like = 25.4635 Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #4 Rep #1 pred log like = 16.8111 Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #5 Rep #1 pred log like = 62.1884 Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #6 Rep #1 pred log like = 118.246 Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #7 Rep #1 pred log like = 33.9945 Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #8 Rep #1 pred log like = 79.0526 Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #9 Rep #1 pred log like = 19.9614 Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #10 Rep #1 pred log like = 0 AvgPred = 50.4216 with stdev = 37.6865 Completed at 0.00333333 Next point at 0.00390084 with value 50.4732 and continue = 0 search[ 0.00333333 ] = 50.4216(37.6865) search[ 0.0333333 ] = 50.4807(38.0685) search[ 0.333333 ] = 49.6943(36.9967) search[ 3.33333 ] = 49.0729(36.4707) Maximum predicted log likelihood (50.4732) estimated at: 0.00390084 (variance) 22.6431 (lambda) Fitting model at optimal hyperparameter Using prior: Laplace(22.6431) None Warning: BLR gradient is ill-conditioned Enforcing convergence! Performing 10-fold cross-validation [seed = 1752845230] with data partitions of sizes 1 1 1 1 1 1 1 1 1 0 Using 1 thread(s) Starting var = 0.333333 (default) Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #1 Rep #1 pred log like = 106.596 Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #2 Rep #1 pred log like = 44.549 Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #3 Rep #1 pred log like = 24.9463 Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #4 Rep #1 pred log like = 14.6736 Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #5 Rep #1 pred log like = 59.4638 Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #6 Rep #1 pred log like = 112.876 Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #7 Rep #1 pred log like = 33.6223 Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #8 Rep #1 pred log like = 79.8292 Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #9 Rep #1 pred log like = 20.3428 Running at Laplace(2.44949) None Grid-point #1 at 0.333333 Fold #10 Rep #1 pred log like = 0 AvgPred = 49.6899 with stdev = 36.9973 Completed at 0.333333 Next point at 3.33333 with value 0 and continue = 1 search[ 0.333333 ] = 49.6899(36.9973) Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #1 Rep #1 pred log like = 106.154 Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #2 Rep #1 pred log like = 44.6612 Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #3 Rep #1 pred log like = 24.8041 Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #4 Rep #1 pred log like = 14.5912 Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #5 Rep #1 pred log like = 57.3588 Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #6 Rep #1 pred log like = 110.226 Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #7 Rep #1 pred log like = 32.8656 Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #8 Rep #1 pred log like = 79.7722 Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #9 Rep #1 pred log like = 20.3443 Running at Laplace(0.774597) None Grid-point #2 at 3.33333 Fold #10 Rep #1 pred log like = 0 AvgPred = 49.0778 with stdev = 36.4728 Completed at 3.33333 Next point at 0.0333333 with value 0 and continue = 1 search[ 0.333333 ] = 49.6899(36.9973) search[ 3.33333 ] = 49.0778(36.4728) Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #1 Rep #1 pred log like = 107.809 Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #2 Rep #1 pred log like = 43.169 Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #3 Rep #1 pred log like = 25.0634 Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #4 Rep #1 pred log like = 15.7529 Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #5 Rep #1 pred log like = 60.6085 Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #6 Rep #1 pred log like = 118.437 Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #7 Rep #1 pred log like = 34.0058 Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #8 Rep #1 pred log like = 79.6334 Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #9 Rep #1 pred log like = 20.3271 Running at Laplace(7.74597) None Grid-point #3 at 0.0333333 Fold #10 Rep #1 pred log like = 0 AvgPred = 50.4806 with stdev = 38.0678 Completed at 0.0333333 Next point at 0.00333333 with value 0 and continue = 1 search[ 0.0333333 ] = 50.4806(38.0678) search[ 0.333333 ] = 49.6899(36.9973) search[ 3.33333 ] = 49.0778(36.4728) Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #1 Rep #1 pred log like = 106.001 Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #2 Rep #1 pred log like = 42.498 Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #3 Rep #1 pred log like = 25.4638 Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #4 Rep #1 pred log like = 16.8124 Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #5 Rep #1 pred log like = 62.1884 Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #6 Rep #1 pred log like = 118.246 Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #7 Rep #1 pred log like = 33.9944 Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #8 Rep #1 pred log like = 79.0552 Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #9 Rep #1 pred log like = 19.9614 Running at Laplace(24.4949) None Grid-point #4 at 0.00333333 Fold #10 Rep #1 pred log like = 0 AvgPred = 50.422 with stdev = 37.6866 Completed at 0.00333333 Next point at 0.0037371 with value 50.4741 and continue = 0 search[ 0.00333333 ] = 50.422(37.6866) search[ 0.0333333 ] = 50.4806(38.0678) search[ 0.333333 ] = 49.6899(36.9973) search[ 3.33333 ] = 49.0778(36.4728) Maximum predicted log likelihood (50.4741) estimated at: 0.0037371 (variance) 23.1338 (lambda) Fitting model at optimal hyperparameter Using prior: Laplace(23.1338) None Warning: BLR gradient is ill-conditioned Enforcing convergence! Sparseness = 80.112 % Sorting covariates by covariateId, stratumId, and rowId Using cross-validation selector type byPid Performing 10-fold cross-validation [seed = 123] with data partitions of sizes 100 100 100 100 100 100 100 100 100 100 Using 1 thread(s) Starting var = 0.1 Running at Laplace(4.47214) None Grid-point #1 at 0.1 Fold #1 Rep #1 pred log like = -14146.5 Running at Laplace(4.47214) None Grid-point #1 at 0.1 Fold #2 Rep #1 pred log like = -13824.3 Running at Laplace(4.47214) None Grid-point #1 at 0.1 Fold #3 Rep #1 pred log like = -13922.5 Running at Laplace(4.47214) None Grid-point #1 at 0.1 Fold #4 Rep #1 pred log like = -12009.7 Running at Laplace(4.47214) None Grid-point #1 at 0.1 Fold #5 Rep #1 pred log like = -13190.5 Running at Laplace(4.47214) None Grid-point #1 at 0.1 Fold #6 Rep #1 pred log like = -14032 Running at Laplace(4.47214) None Grid-point #1 at 0.1 Fold #7 Rep #1 pred log like = -13053.7 Running at Laplace(4.47214) None Grid-point #1 at 0.1 Fold #8 Rep #1 pred log like = -13911.1 Running at Laplace(4.47214) None Grid-point #1 at 0.1 Fold #9 Rep #1 pred log like = -13560.8 Running at Laplace(4.47214) None Grid-point #1 at 0.1 Fold #10 Rep #1 pred log like = -13052.5 AvgPred = -13470.4 with stdev = 621.67 Completed at 0.1 Next point at 1 with value 0 and continue = 1 search[ 0.1 ] = -13470.4(621.67) Running at Laplace(1.41421) None Grid-point #2 at 1 Fold #1 Rep #1 pred log like = -14146.5 Running at Laplace(1.41421) None Grid-point #2 at 1 Fold #2 Rep #1 pred log like = -13824.3 Running at Laplace(1.41421) None Grid-point #2 at 1 Fold #3 Rep #1 pred log like = -13922.5 Running at Laplace(1.41421) None Grid-point #2 at 1 Fold #4 Rep #1 pred log like = -12009.7 Running at Laplace(1.41421) None Grid-point #2 at 1 Fold #5 Rep #1 pred log like = -13190.5 Running at Laplace(1.41421) None Grid-point #2 at 1 Fold #6 Rep #1 pred log like = -14032 Running at Laplace(1.41421) None Grid-point #2 at 1 Fold #7 Rep #1 pred log like = -13053.7 Running at Laplace(1.41421) None Grid-point #2 at 1 Fold #8 Rep #1 pred log like = -13911.1 Running at Laplace(1.41421) None Grid-point #2 at 1 Fold #9 Rep #1 pred log like = -13560.8 Running at Laplace(1.41421) None Grid-point #2 at 1 Fold #10 Rep #1 pred log like = -13052.4 AvgPred = -13470.4 with stdev = 621.671 Completed at 1 Next point at 0.01 with value 0 and continue = 1 search[ 0.1 ] = -13470.4(621.67) search[ 1 ] = -13470.4(621.671) Running at Laplace(14.1421) None Grid-point #3 at 0.01 Fold #1 Rep #1 pred log like = -14146.5 Running at Laplace(14.1421) None Grid-point #3 at 0.01 Fold #2 Rep #1 pred log like = -13824.3 Running at Laplace(14.1421) None Grid-point #3 at 0.01 Fold #3 Rep #1 pred log like = -13922.5 Running at Laplace(14.1421) None Grid-point #3 at 0.01 Fold #4 Rep #1 pred log like = -12009.7 Running at Laplace(14.1421) None Grid-point #3 at 0.01 Fold #5 Rep #1 pred log like = -13190.3 Running at Laplace(14.1421) None Grid-point #3 at 0.01 Fold #6 Rep #1 pred log like = -14031.9 Running at Laplace(14.1421) None Grid-point #3 at 0.01 Fold #7 Rep #1 pred log like = -13053.7 Running at Laplace(14.1421) None Grid-point #3 at 0.01 Fold #8 Rep #1 pred log like = -13911.1 Running at Laplace(14.1421) None Grid-point #3 at 0.01 Fold #9 Rep #1 pred log like = -13560.8 Running at Laplace(14.1421) None Grid-point #3 at 0.01 Fold #10 Rep #1 pred log like = -13052.6 AvgPred = -13470.3 with stdev = 621.666 Completed at 0.01 Next point at 0.001 with value 0 and continue = 1 search[ 0.01 ] = -13470.3(621.666) search[ 0.1 ] = -13470.4(621.67) search[ 1 ] = -13470.4(621.671) Running at Laplace(44.7214) None Grid-point #4 at 0.001 Fold #1 Rep #1 pred log like = -14146.6 Running at Laplace(44.7214) None Grid-point #4 at 0.001 Fold #2 Rep #1 pred log like = -13824.2 Running at Laplace(44.7214) None Grid-point #4 at 0.001 Fold #3 Rep #1 pred log like = -13922.5 Running at Laplace(44.7214) None Grid-point #4 at 0.001 Fold #4 Rep #1 pred log like = -12009.6 Running at Laplace(44.7214) None Grid-point #4 at 0.001 Fold #5 Rep #1 pred log like = -13189.8 Running at Laplace(44.7214) None Grid-point #4 at 0.001 Fold #6 Rep #1 pred log like = -14031.6 Running at Laplace(44.7214) None Grid-point #4 at 0.001 Fold #7 Rep #1 pred log like = -13053.7 Running at Laplace(44.7214) None Grid-point #4 at 0.001 Fold #8 Rep #1 pred log like = -13911.2 Running at Laplace(44.7214) None Grid-point #4 at 0.001 Fold #9 Rep #1 pred log like = -13561 Running at Laplace(44.7214) None Grid-point #4 at 0.001 Fold #10 Rep #1 pred log like = -13052.9 AvgPred = -13470.3 with stdev = 621.685 Completed at 0.001 Next point at 0.0001 with value 0 and continue = 1 search[ 0.001 ] = -13470.3(621.685) search[ 0.01 ] = -13470.3(621.666) search[ 0.1 ] = -13470.4(621.67) search[ 1 ] = -13470.4(621.671) Running at Laplace(141.421) None Grid-point #5 at 0.0001 Fold #1 Rep #1 pred log like = -14146.6 Running at Laplace(141.421) None Grid-point #5 at 0.0001 Fold #2 Rep #1 pred log like = -13824.4 Running at Laplace(141.421) None Grid-point #5 at 0.0001 Fold #3 Rep #1 pred log like = -13922.3 Running at Laplace(141.421) None Grid-point #5 at 0.0001 Fold #4 Rep #1 pred log like = -12009.6 Running at Laplace(141.421) None Grid-point #5 at 0.0001 Fold #5 Rep #1 pred log like = -13189 Running at Laplace(141.421) None Grid-point #5 at 0.0001 Fold #6 Rep #1 pred log like = -14030.9 Running at Laplace(141.421) None Grid-point #5 at 0.0001 Fold #7 Rep #1 pred log like = -13053.6 Running at Laplace(141.421) None Grid-point #5 at 0.0001 Fold #8 Rep #1 pred log like = -13911.5 Running at Laplace(141.421) None Grid-point #5 at 0.0001 Fold #9 Rep #1 pred log like = -13561 Running at Laplace(141.421) None Grid-point #5 at 0.0001 Fold #10 Rep #1 pred log like = -13053.1 AvgPred = -13470.2 with stdev = 621.656 Completed at 0.0001 Next point at 1e-05 with value 0 and continue = 1 search[ 0.0001 ] = -13470.2(621.656) search[ 0.001 ] = -13470.3(621.685) search[ 0.01 ] = -13470.3(621.666) search[ 0.1 ] = -13470.4(621.67) search[ 1 ] = -13470.4(621.671) Running at Laplace(447.214) None Grid-point #6 at 1e-05 Fold #1 Rep #1 pred log like = -14146.6 Running at Laplace(447.214) None Grid-point #6 at 1e-05 Fold #2 Rep #1 pred log like = -13825.3 Running at Laplace(447.214) None Grid-point #6 at 1e-05 Fold #3 Rep #1 pred log like = -13922.8 Running at Laplace(447.214) None Grid-point #6 at 1e-05 Fold #4 Rep #1 pred log like = -12011.1 Running at Laplace(447.214) None Grid-point #6 at 1e-05 Fold #5 Rep #1 pred log like = -13189.7 Running at Laplace(447.214) None Grid-point #6 at 1e-05 Fold #6 Rep #1 pred log like = -14031.3 Running at Laplace(447.214) None Grid-point #6 at 1e-05 Fold #7 Rep #1 pred log like = -13054.9 Running at Laplace(447.214) None Grid-point #6 at 1e-05 Fold #8 Rep #1 pred log like = -13912.9 Running at Laplace(447.214) None Grid-point #6 at 1e-05 Fold #9 Rep #1 pred log like = -13562 Running at Laplace(447.214) None Grid-point #6 at 1e-05 Fold #10 Rep #1 pred log like = -13054.1 AvgPred = -13471.1 with stdev = 621.373 Completed at 1e-05 Next point at 0.0125877 with value -13470.2 and continue = 0 search[ 1e-05 ] = -13471.1(621.373) search[ 0.0001 ] = -13470.2(621.656) search[ 0.001 ] = -13470.3(621.685) search[ 0.01 ] = -13470.3(621.666) search[ 0.1 ] = -13470.4(621.67) search[ 1 ] = -13470.4(621.671) Maximum predicted log likelihood (-13470.2) estimated at: 0.0125877 (variance) 12.605 (lambda) Fitting model at optimal hyperparameter Using prior: Laplace(12.605) None Sparseness = 80.112 % Sorting outcomes by stratumId, time (descending), y and rowId Sorting covariates by covariateId, stratumId, time (descending), y, and rowId Sparseness = 99.09 % Sorting covariates by covariateId and rowId [ FAIL 0 | WARN 0 | SKIP 35 | PASS 318 ] ══ Skipped tests (35) ══════════════════════════════════════════════════════════ • Current not working (1): 'test-offsetPoisson.R:41:5' • GPU not available (6): 'test-gpucox.R:12:5', 'test-gpucox.R:37:5', 'test-gpucox.R:63:5', 'test-gpucox.R:88:5', 'test-gpucox.R:118:5', 'test-timevaryingCox.R:8:5' • Needs debugging (1): 'test-profileLikelihood.R:126:2' • On CRAN (16): 'test-bootstrap.R:58:5', 'test-bootstrap.R:110:5', 'test-bootstrap.R:182:5', 'test-bootstrap.R:240:5', 'test-bootstrap.R:298:5', 'test-cv.R:37:5', 'test-cv.R:110:5', 'test-cv.R:148:5', 'test-dataConversionStratified.R:113:3', 'test-largeBernoulli.R:26:5', 'test-largeBernoulli.R:73:5', 'test-outOfSample.R:7:5', 'test-parameterizedPriors.R:88:5', 'test-smallExactCLR.R:9:5', 'test-smallExactCLR.R:32:5', 'test-weighted_cv.R:5:5' • empty test (6): 'test-believedBroken.R:75:1', 'test-cprViaSql.R:5:1', 'test-multitypePoisson.R:113:1', 'test-multitypePoisson.R:146:1', 'test-sqlConstructor.R:101:1', 'test-weighting.R:259:1' • for debugging purposes; simulation takes too long (1): 'test-floatingPoint.R:57:5' • residuals not yet implemented (4): 'test-residuals.R:7:5', 'test-residuals.R:31:5', 'test-residuals.R:53:5', 'test-residuals.R:85:5' [ FAIL 0 | WARN 0 | SKIP 35 | PASS 318 ] > > proc.time() user system elapsed 21.59 6.04 26.98