* using log directory 'd:/RCompile/CRANincoming/R-devel/CureAuxSP.Rcheck' * using R Under development (unstable) (2024-02-25 r85988 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 12.3.0 GNU Fortran (GCC) 12.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'CureAuxSP/DESCRIPTION' ... OK * this is package 'CureAuxSP' version '0.0.1' * package encoding: UTF-8 * checking CRAN incoming feasibility ... NOTE Maintainer: 'Jie Ding ' New submission * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking serialization versions ... OK * checking whether package 'CureAuxSP' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... NOTE Mismatches for apparent methods not registered: print: function(x, ...) print.SMC.AuxSP: function(object) See section 'Registering S3 methods' in the 'Writing R Extensions' manual. * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... NOTE Rd file 'SMC.AuxSP.Rd': \examples lines wider than 100 characters: # ifelse(clinical[,'breast_carcinoma_estrogen_receptor_status']=='Negative',0,NA)), # ifelse(grepl(pattern,x),regmatches(x,regexpr(pattern,x)),NA)},USE.NAMES = FALSE) These lines will be truncated in the PDF manual. * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... [212s] NOTE Examples with CPU (user + system) or elapsed time > 10s user system elapsed SMC.AuxSP 186.56 25.11 211.7 * checking PDF version of manual ... [14s] OK * checking HTML version of manual ... OK * DONE Status: 4 NOTEs