* using log directory ‘/srv/hornik/tmp/CRAN_pretest/Coxmos.Rcheck’
* using R Under development (unstable) (2025-01-07 r87537)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 19.1.6 (1)
    Debian flang-new version 19.1.6 (1)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘Coxmos/DESCRIPTION’ ... OK
* this is package ‘Coxmos’ version ‘1.1.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [5s/8s] NOTE
Maintainer: ‘Pedro Salguero García <pedrosalguerog@gmail.com>’

Found the following (possibly) invalid URLs:
  URL: http://www.ncbi.nlm.nih.gov/pubmed/25286920 (moved to https://pubmed.ncbi.nlm.nih.gov/25286920/)
    From: man/splsdrcox.Rd
          man/splsdrcox_penalty.Rd
    Status: 301
    Message: Moved Permanently
  URL: http://www.ncbi.nlm.nih.gov/pubmed/27065756 (moved to https://pubmed.ncbi.nlm.nih.gov/27065756/)
    From: man/coxEN.Rd
    Status: 301
    Message: Moved Permanently
  URL: http://www.ncbi.nlm.nih.gov/pubmed/29099853 (moved to https://pubmed.ncbi.nlm.nih.gov/29099853/)
    From: man/mb.splsdacox.Rd
          man/mb.splsdrcox.Rd
          man/splsdacox.Rd
          man/splsdrcox.Rd
    Status: 301
    Message: Moved Permanently
  URL: http://www.ncbi.nlm.nih.gov/pubmed/32687225 (moved to https://pubmed.ncbi.nlm.nih.gov/32687225/)
    From: man/eval_Coxmos_models.Rd
    Status: 301
    Message: Moved Permanently
  URL: http://www.ncbi.nlm.nih.gov/pubmed/8543963 (moved to https://pubmed.ncbi.nlm.nih.gov/8543963/)
    From: man/cox.Rd
    Status: 301
    Message: Moved Permanently
  URL: http://www.ncbi.nlm.nih.gov/pubmed/null (moved to https://pubmed.ncbi.nlm.nih.gov/null)
    From: man/plot_proportionalHazard.Rd
          man/splsdrcox.Rd
          man/splsdrcox_penalty.Rd
          man/splsicox.Rd
    Status: 301
    Message: Moved Permanently
For content that is 'Moved Permanently', please change http to https,
add trailing slashes, or replace the old by the new URL.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Coxmos’ can be installed ... [17s/17s] OK
* used C compiler: ‘Debian clang version 19.1.6 (1)’
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [2s/2s] OK
* checking whether the package can be loaded with stated dependencies ... [2s/2s] OK
* checking whether the package can be unloaded cleanly ... [2s/2s] OK
* checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK
* checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
* checking loading without being on the library search path ... [2s/2s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [37s/37s] OK
* checking Rd files ... [3s/3s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [59s/59s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [112s/112s] OK
* checking PDF version of manual ... [5s/5s] OK
* checking HTML version of manual ... [3s/3s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 NOTE