downloading reverse dependencies ...
downloading CompositionalML_1.0.tar.gz ... ok
downloading CompositionalRF_1.0.tar.gz ... ok
downloading MLE_1.2.tar.gz ... ok
downloading QFASA_1.2.1.tar.gz ... ok

installing dependencies ‘BGFD’, ‘bivpois’, ‘Boruta’, ‘codalm’,
  ‘Compositional’, ‘Directional’, ‘FlexDir’, ‘geppe’, ‘gp’, ‘mixture’,
  ‘MN’, ‘MultivariateRandomForest’, ‘mvcauchy’, ‘skellam’

also installing the dependencies ‘AdequacyModel’, ‘RNGforGPD’

begin installing package ‘AdequacyModel’
begin installing package ‘RNGforGPD’
begin installing package ‘codalm’
begin installing package ‘mixture’
begin installing package ‘FlexDir’
begin installing package ‘Boruta’
begin installing package ‘MultivariateRandomForest’
begin installing package ‘bivpois’
begin installing package ‘Directional’
begin installing package ‘geppe’
begin installing package ‘MN’
begin installing package ‘skellam’
begin installing package ‘mvcauchy’
* installing *source* package ‘codalm’ ...
** package ‘codalm’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (codalm)
* installing *source* package ‘AdequacyModel’ ...
** package ‘AdequacyModel’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (AdequacyModel)
begin installing package ‘BGFD’
* installing *source* package ‘skellam’ ...
** package ‘skellam’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (skellam)
* installing *source* package ‘Boruta’ ...
** package ‘Boruta’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Boruta)
* installing *source* package ‘MN’ ...
** package ‘MN’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (MN)
* installing *source* package ‘geppe’ ...
** package ‘geppe’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (geppe)
* installing *source* package ‘mvcauchy’ ...
** package ‘mvcauchy’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mvcauchy)
* installing *source* package ‘bivpois’ ...
** package ‘bivpois’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bivpois)
* installing *source* package ‘FlexDir’ ...
** package ‘FlexDir’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (FlexDir)
* installing *source* package ‘RNGforGPD’ ...
** package ‘RNGforGPD’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RNGforGPD)
begin installing package ‘gp’
* installing *source* package ‘BGFD’ ...
** package ‘BGFD’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BGFD)
* installing *source* package ‘MultivariateRandomForest’ ...
** package ‘MultivariateRandomForest’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.2.0-3) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp0HiSjs/R.INSTALL1b761060af32d1/MultivariateRandomForest/src'
g++-14  -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native  -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o
g++-14  -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native  -DR_NO_REMAP -c rcpp.cpp -o rcpp.o
rcpp.cpp: In function ‘Rcpp::List splitt2(Rcpp::NumericMatrix, Rcpp::NumericMatrix, int, Rcpp::NumericVector, Rcpp::NumericMatrix, int, Rcpp::NumericVector)’:
rcpp.cpp:112:9: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  112 |         for (int i = 0; i<yhat_nrow; ++i)
      |         ^~~
rcpp.cpp:118:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  118 |           for (int i = 0; i<yhat_nrow; ++i)
      |           ^~~
rcpp.cpp:119:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  119 |             for (int j = 0; j<Inv_Cov_Y.ncol(); ++j)
      |             ^~~
rcpp.cpp:125:15: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  125 |               NumericMatrix mult2(nrow,nrow);
      |               ^~~~~~~~~~~~~
rcpp.cpp:130:9: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  130 |         for (int i = 0; i<r1; ++i)
      |         ^~~
rcpp.cpp:136:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  136 |           for (int i = 0; i<r1; ++i)
      |           ^~~
rcpp.cpp:137:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  137 |             for (int j = 0; j<c2; ++j)
      |             ^~~
rcpp.cpp:143:15: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  143 |               for (int kk = 0; kk<nrow; kk++) {
      |               ^~~
rcpp.cpp:179:9: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  179 |         for (int i = 0; i<yhat_nrow; ++i)
      |         ^~~
rcpp.cpp:185:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  185 |           for (int i = 0; i<yhat_nrow; ++i)
      |           ^~~
rcpp.cpp:186:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  186 |             for (int j = 0; j<Inv_Cov_Y.ncol(); ++j)
      |             ^~~
rcpp.cpp:192:15: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  192 |               NumericMatrix mult2(nrow,nrow);
      |               ^~~~~~~~~~~~~
rcpp.cpp:197:9: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  197 |         for (int i = 0; i<r1; ++i)
      |         ^~~
rcpp.cpp:203:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  203 |           for (int i = 0; i<r1; ++i)
      |           ^~~
rcpp.cpp:204:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  204 |             for (int j = 0; j<c2; ++j)
      |             ^~~
rcpp.cpp:210:15: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  210 |               for (int kk = 0; kk<nrow; kk++) {
      |               ^~~
rcpp.cpp: In function ‘double Node_cost(Rcpp::NumericMatrix, Rcpp::NumericMatrix, int)’:
rcpp.cpp:305:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  305 |     for(int i=0; i<yhat_nrow; ++i)
      |     ^~~
rcpp.cpp:311:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  311 |       for(int i=0; i<yhat_nrow; ++i)
      |       ^~~
rcpp.cpp:312:9: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  312 |         for(int j=0; j<Inv_Cov_Y.ncol(); ++j)
      |         ^~~
rcpp.cpp:318:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  318 |           NumericMatrix mult2(nrow,nrow);
      |           ^~~~~~~~~~~~~
rcpp.cpp:323:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  323 |     for(int i=0; i<r1; ++i)
      |     ^~~
rcpp.cpp:329:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  329 |       for(int i=0; i<r1; ++i)
      |       ^~~
rcpp.cpp:330:9: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  330 |         for(int j=0; j<c2; ++j)
      |         ^~~
rcpp.cpp:336:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  336 |           for(int kk=0; kk<nrow; kk++){
      |           ^~~
g++-14  -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native  -DR_NO_REMAP -c registerDynamicSymbol.cpp -o registerDynamicSymbol.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o MultivariateRandomForest.so RcppExports.o rcpp.o registerDynamicSymbol.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp0HiSjs/R.INSTALL1b761060af32d1/MultivariateRandomForest/src'
installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-MultivariateRandomForest/00new/MultivariateRandomForest/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (MultivariateRandomForest)
* installing *source* package ‘gp’ ...
** package ‘gp’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (gp)
* installing *source* package ‘Directional’ ...
** package ‘Directional’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Directional)
* installing *source* package ‘mixture’ ...
** package ‘mixture’ successfully unpacked and MD5 sums checked
** using staged installation
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether g++-14 -std=gnu++17 accepts -g... yes
checking how to run the C++ preprocessor... g++-14 -std=gnu++17 -E
checking for g++-14 -std=gnu++17 option to support OpenMP... -fopenmp
checking for gsl-config... /usr/bin/gsl-config
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C++ compiler: ‘g++-14 (Debian 14.2.0-3) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpESrbSb/R.INSTALL1b760c3b485f9c/mixture/src'
g++-14  -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -fopenmp -DARMA_64BIT_WORD -I/usr/include -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppGSL/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native  -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o
g++-14  -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -fopenmp -DARMA_64BIT_WORD -I/usr/include -I../inst/include -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppGSL/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native  -DR_NO_REMAP -c pcm.cpp -o pcm.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o mixture.so RcppExports.o pcm.o -fopenmp -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -llapack -L/home/hornik/tmp/R-d-gcc-14/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-14/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpESrbSb/R.INSTALL1b760c3b485f9c/mixture/src'
installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-mixture/00new/mixture/libs
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mixture)
begin installing package ‘Compositional’
* installing *source* package ‘Compositional’ ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Compositional)

checking Compositional_7.2.tar.gz ...
checking CompositionalML_1.0.tar.gz ...
checking CompositionalRF_1.0.tar.gz ...
checking MLE_1.2.tar.gz ...
checking QFASA_1.2.1.tar.gz ...

Depends:
Package: Compositional
  Depends: R (>= 4.0)
  Imports: bigstatsr, cluster, doParallel, emplik, energy, foreach,
    glmnet, graphics, grDevices, quantreg, MASS, Matrix, mda,
    minpack.lm, mixture, nnet, quadprog, Rfast, Rfast2, Rnanoflann, sn,
    stats

Timings:
                user system elapsed
Compositional 139.13  8.114 147.975

Results:
Check status summary:
                  OK
  Source packages  1
  Reverse depends  4

Check results summary:
Compositional ... OK
rdepends_CompositionalML ... OK
rdepends_CompositionalRF ... OK
rdepends_MLE ... OK
rdepends_QFASA ... OK