Package check result: ERROR Check: tests, Result: ERROR Running ‘testthat.R’ [11s/11s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(CohortSymmetry) > > test_check("CohortSymmetry") [ FAIL 7 | WARN 0 | SKIP 58 | PASS 0 ] ══ Skipped tests (58) ══════════════════════════════════════════════════════════ • On CRAN (56): 'test-attrition.R:2:3', 'test-attrition.R:63:3', 'test-attrition.R:149:3', 'test-attrition.R:310:3', 'test-attrition.R:397:3', 'test-attrition.R:461:3', 'test-attrition.R:592:3', 'test-attrition.R:769:3', 'test-dbs.R:2:3', 'test-dbs.R:50:3', 'test-eunomia.R:2:3', 'test-eunomia.R:65:3', 'test-generateSequenceCohortSet.R:3:3', 'test-generateSequenceCohortSet.R:20:3', 'test-generateSequenceCohortSet.R:58:3', 'test-generateSequenceCohortSet.R:97:3', 'test-generateSequenceCohortSet.R:154:3', 'test-generateSequenceCohortSet.R:206:3', 'test-generateSequenceCohortSet.R:260:3', 'test-generateSequenceCohortSet.R:289:3', 'test-generateSequenceCohortSet.R:331:3', 'test-generateSequenceCohortSet.R:357:3', 'test-generateSequenceCohortSet.R:428:3', 'test-generateSequenceCohortSet.R:516:3', 'test-generateSequenceCohortSet.R:664:3', 'test-generateSequenceCohortSet.R:752:3', 'test-generateSequenceCohortSet.R:765:3', 'test-generateSequenceCohortSet.R:777:3', 'test-generateSequenceCohortSet.R:789:3', 'test-generateSequenceCohortSet.R:801:3', 'test-generateSequenceCohortSet.R:819:3', 'test-generateSequenceCohortSet.R:837:3', 'test-generateSequenceCohortSet.R:849:3', 'test-generateSequenceCohortSet.R:860:3', 'test-generateSequenceCohortSet.R:871:3', 'test-generateSequenceCohortSet.R:895:3', 'test-plotSequenceRatio.R:2:3', 'test-plotSequenceRatio.R:42:3', 'test-plotSequenceRatio.R:80:3', 'test-plotTemporalSymmetry.R:42:3', 'test-plotTemporalSymmetry.R:85:3', 'test-summariseSequenceRatios.R:203:3', 'test-summariseSequenceRatios.R:415:3', 'test-summariseSequenceRatios.R:522:3', 'test-summariseSequenceRatios.R:604:3', 'test-summariseSequenceRatios.R:763:3', 'test-summariseSequenceRatios.R:801:3', 'test-summariseSequenceRatios.R:839:3', 'test-summariseSequenceRatios.R:877:3', 'test-summariseSequenceRatios.R:960:3', 'test-summariseTemporalSymmetry.R:71:3', 'test-summariseTemporalSymmetry.R:96:3', 'test-tableSequenceRatios.R:46:3', 'test-tableSequenceRatios.R:70:3', 'test-tableTemporalSymmetry.R:46:3', 'test-tableTemporalSymmetry.R:70:3' • {gt} is not installed (2): 'test-tableSequenceRatios.R:2:3', 'test-tableTemporalSymmetry.R:2:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-generateSequenceCohortSet.R:36:3'): one ID against one ID, example 1 ── Error in `mockCohortSymmetry()`: The package "duckdb" is required. Backtrace: ▆ 1. └─CohortSymmetry::mockCohortSymmetry() at test-generateSequenceCohortSet.R:36:3 2. └─rlang::check_installed("duckdb") ── Error ('test-generateSequenceCohortSet.R:78:3'): one ID against one ID, example 3 ── Error in `mockCohortSymmetry()`: The package "duckdb" is required. Backtrace: ▆ 1. └─CohortSymmetry::mockCohortSymmetry() at test-generateSequenceCohortSet.R:78:3 2. └─rlang::check_installed("duckdb") ── Error ('test-plotTemporalSymmetry.R:17:3'): plot working ──────────────────── Error in `(function (cond) .Internal(C_tryCatchHelper(addr, 1L, cond)))(structure(list(message = "there is no package called 'duckdb'", call = loadNamespace(x), package = "duckdb", lib.loc = NULL), class = c("packageNotFoundError", "error", "condition")))`: error in evaluating the argument 'drv' in selecting a method for function 'dbConnect': there is no package called 'duckdb' Backtrace: ▆ 1. ├─DBI::dbConnect(duckdb::duckdb(), ":memory:") at test-plotTemporalSymmetry.R:17:3 2. ├─base::loadNamespace(x) 3. │ ├─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL) 4. │ │ └─base (local) withOneRestart(expr, restarts[[1L]]) 5. │ │ └─base (local) doWithOneRestart(return(expr), restart) 6. │ └─base::stop(cond) 7. └─base (local) ``(``) ── Error ('test-summariseSequenceRatios.R:32:3'): summariseSequenceRatios ────── Error in `mockCohortSymmetry(indexCohort = indexCohort, markerCohort = markerCohort)`: The package "duckdb" is required. Backtrace: ▆ 1. └─CohortSymmetry::mockCohortSymmetry(...) at test-summariseSequenceRatios.R:32:3 2. └─rlang::check_installed("duckdb") ── Error ('test-summariseSequenceRatios.R:97:3'): summariseSequenceRatios - testing ratios and CIs, Example 1 ── Error in `mockCohortSymmetry(indexCohort = indexCohort, markerCohort = markerCohort)`: The package "duckdb" is required. Backtrace: ▆ 1. └─CohortSymmetry::mockCohortSymmetry(...) at test-summariseSequenceRatios.R:97:3 2. └─rlang::check_installed("duckdb") ── Error ('test-summariseSequenceRatios.R:164:3'): summariseSequenceRatios - testing ratios and CIs, Example 2 ── Error in `mockCohortSymmetry(indexCohort = indexCohort, markerCohort = markerCohort)`: The package "duckdb" is required. Backtrace: ▆ 1. └─CohortSymmetry::mockCohortSymmetry(...) at test-summariseSequenceRatios.R:164:3 2. └─rlang::check_installed("duckdb") ── Error ('test-summariseTemporalSymmetry.R:2:3'): test summariseTemporalSymmetry ── Error in `mockCohortSymmetry()`: The package "duckdb" is required. Backtrace: ▆ 1. └─CohortSymmetry::mockCohortSymmetry() at test-summariseTemporalSymmetry.R:2:3 2. └─rlang::check_installed("duckdb") [ FAIL 7 | WARN 0 | SKIP 58 | PASS 0 ] Error: Test failures Execution halted