downloading reverse dependencies ... downloading PhenotypeR_0.2.0.tar.gz ... ok downloading CohortConstructor_0.6.0.tar.gz ... ok downloading OmopSketch_0.5.1.tar.gz ... ok downloading OmopViewer_0.5.0.tar.gz ... ok downloading visOmopResults_1.4.0.tar.gz ... ok installing dependencies ‘CirceR’, ‘CohortCharacteristics’, ‘CohortConstructor’, ‘CohortSurvival’, ‘DrugUtilisation’, ‘extrafont’, ‘IncidencePrevalence’, ‘MeasurementDiagnostics’, ‘omock’, ‘OmopSketch’, ‘OmopViewer’, ‘reactablefmtr’, ‘rsconnect’, ‘shiny.fluent’, ‘shinyTree’ also installing the dependencies ‘Rttf2pt1’, ‘shiny.react’ begin installing package ‘Rttf2pt1’ begin installing package ‘shiny.react’ begin installing package ‘CohortConstructor’ begin installing package ‘DrugUtilisation’ begin installing package ‘omock’ begin installing package ‘CohortCharacteristics’ begin installing package ‘IncidencePrevalence’ begin installing package ‘reactablefmtr’ begin installing package ‘CohortSurvival’ begin installing package ‘CirceR’ begin installing package ‘OmopViewer’ begin installing package ‘shinyTree’ begin installing package ‘rsconnect’ * installing *source* package ‘shiny.react’ ... ** this is package ‘shiny.react’ version ‘0.4.0’ ** package ‘shiny.react’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (shiny.react) begin installing package ‘shiny.fluent’ * installing *source* package ‘CirceR’ ... ** this is package ‘CirceR’ version ‘1.3.3’ ** package ‘CirceR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CirceR) * installing *source* package ‘shinyTree’ ... ** this is package ‘shinyTree’ version ‘0.3.1’ ** package ‘shinyTree’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (shinyTree) * installing *source* package ‘OmopViewer’ ... ** this is package ‘OmopViewer’ version ‘0.5.0’ ** package ‘OmopViewer’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (OmopViewer) * installing *source* package ‘omock’ ... ** this is package ‘omock’ version ‘0.6.0’ ** package ‘omock’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (omock) * installing *source* package ‘CohortSurvival’ ... ** this is package ‘CohortSurvival’ version ‘1.0.3’ ** package ‘CohortSurvival’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CohortSurvival) * installing *source* package ‘CohortCharacteristics’ ... ** this is package ‘CohortCharacteristics’ version ‘1.1.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CohortCharacteristics) * installing *source* package ‘shiny.fluent’ ... ** this is package ‘shiny.fluent’ version ‘0.4.0’ ** package ‘shiny.fluent’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (shiny.fluent) * installing *source* package ‘IncidencePrevalence’ ... ** this is package ‘IncidencePrevalence’ version ‘1.2.1’ ** package ‘IncidencePrevalence’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (IncidencePrevalence) * installing *source* package ‘DrugUtilisation’ ... ** this is package ‘DrugUtilisation’ version ‘1.0.4’ ** package ‘DrugUtilisation’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DrugUtilisation) * installing *source* package ‘reactablefmtr’ ... ** this is package ‘reactablefmtr’ version ‘2.0.0’ ** package ‘reactablefmtr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (reactablefmtr) * installing *source* package ‘rsconnect’ ... ** this is package ‘rsconnect’ version ‘1.6.2’ ** package ‘rsconnect’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rsconnect) * installing *source* package ‘CohortConstructor’ ... ** this is package ‘CohortConstructor’ version ‘0.6.0’ ** package ‘CohortConstructor’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CohortConstructor) begin installing package ‘OmopSketch’ begin installing package ‘MeasurementDiagnostics’ * installing *source* package ‘Rttf2pt1’ ... ** this is package ‘Rttf2pt1’ version ‘1.3.14’ ** package ‘Rttf2pt1’ successfully unpacked and MD5 sums checked ** using staged installation ** libs make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpRnVvqC/R.INSTALL3e1e1b800e2ee/Rttf2pt1/src' echo "make ttf2pt1 in ttf2pt1/ ..." make ttf2pt1 in ttf2pt1/ ... (cd ttf2pt1; make CC="`"/home/hornik/tmp/R/bin/R" CMD config CC`" CFLAGS="-g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native " ttf2pt1) make[2]: Entering directory '/home/hornik/tmp/scratch/RtmpRnVvqC/R.INSTALL3e1e1b800e2ee/Rttf2pt1/src/ttf2pt1' gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ttf2pt1.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pt1.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c runt1asm.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ttf.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ft.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bdf.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bitmap.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -o ttf2pt1 ttf2pt1.o pt1.o runt1asm.o ttf.o ft.o bdf.o bitmap.o -lm make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmpRnVvqC/R.INSTALL3e1e1b800e2ee/Rttf2pt1/src/ttf2pt1' make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpRnVvqC/R.INSTALL3e1e1b800e2ee/Rttf2pt1/src' installing via 'install.libs.R' to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-Rttf2pt1/00new/Rttf2pt1 [1] "" Installing ttf2pt1/ttf2pt1 to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-Rttf2pt1/00new/Rttf2pt1/exec ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Rttf2pt1) begin installing package ‘extrafont’ * installing *source* package ‘MeasurementDiagnostics’ ... ** this is package ‘MeasurementDiagnostics’ version ‘0.1.0’ ** package ‘MeasurementDiagnostics’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MeasurementDiagnostics) * installing *source* package ‘extrafont’ ... ** this is package ‘extrafont’ version ‘0.20’ ** package ‘extrafont’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (extrafont) * installing *source* package ‘OmopSketch’ ... ** this is package ‘OmopSketch’ version ‘0.5.1’ ** package ‘OmopSketch’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (OmopSketch) checking CohortCharacteristics_1.1.0.tar.gz ... checking PhenotypeR_0.2.0.tar.gz ... checking CohortConstructor_0.6.0.tar.gz ... checking OmopSketch_0.5.1.tar.gz ... checking OmopViewer_0.5.0.tar.gz ... checking visOmopResults_1.4.0.tar.gz ... Depends: Package: CohortCharacteristics Depends: R (>= 4.1) Imports: CDMConnector (>= 1.6.0), dplyr, tidyr, rlang, cli, stringr, omopgenerics (>= 1.3.1), PatientProfiles (>= 1.3.1), snakecase, lifecycle, purrr, clock Timings: user system elapsed CohortCharacteristics 467.435 16.535 383.396 Results: Check status summary: ERROR OK Source packages 0 1 Reverse depends 1 4 Check results summary: CohortCharacteristics ... OK rdepends_CohortConstructor ... OK rdepends_OmopSketch ... ERROR * checking re-building of vignette outputs ... [100s/103s] ERROR rdepends_OmopViewer ... OK rdepends_PhenotypeR ... OK rdepends_visOmopResults ... OK