R Under development (unstable) (2025-11-17 r89032 ucrt) -- "Unsuffered Consequences" Copyright (C) 2025 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(CohortCharacteristics) > > test_check("CohortCharacteristics") Starting 2 test processes. > test-plotCohortTiming.R: i The following estimates will be computed: > test-plotCohortTiming.R: * days_between_cohort_entries: min, q25, median, q75, max, density > test-plotCohortTiming.R: ! Table is collected to memory as not all requested estimates are supported on the database side > test-plotCohortTiming.R: > Start summary of data, at 2025-11-19 01:36:28.585428 > test-plotCohortTiming.R: v Summary finished, at 2025-11-19 01:36:28.761342 > test-plotCohortTiming.R: `result_id` is not present in result. > test-plotCohortTiming.R: `result_id` is not present in result. > test-plotCohortTiming.R: `result_id` is not present in result. > test-plotCohortTiming.R: `result_id` is not present in result. > test-plotCohortTiming.R: i The following estimates will be computed: > test-plotCohortTiming.R: * days_between_cohort_entries: min, q25, median, q75, max, density > test-plotCohortTiming.R: ! Table is collected to memory as not all requested estimates are supported on the database side > test-plotCohortTiming.R: > Start summary of data, at 2025-11-19 01:36:31.389175 > test-plotCohortTiming.R: v Summary finished, at 2025-11-19 01:36:31.596819 > test-plotCohortTiming.R: `result_id` is not present in result. > test-plotCohortTiming.R: `result_id` is not present in result. > test-plotCohortTiming.R: `result_id` is not present in result. > test-plotCohortTiming.R: `result_id` is not present in result. > test-plotCohortAttrition.R: i The following estimates will be computed: > test-plotCohortAttrition.R: * cohort_start_date: min, q25, median, q75, max > test-plotCohortAttrition.R: * cohort_end_date: min, q25, median, q75, max > test-plotCohortAttrition.R: ! Table is collected to memory as not all requested estimates are supported on the database side > test-plotCohortAttrition.R: > Start summary of data, at 2025-11-19 01:36:37.276192 > test-plotCohortAttrition.R: v Summary finished, at 2025-11-19 01:36:37.387991 > test-plotLargeScaleCharacteristics.R: i Summarising large scale characteristics > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: - getting characteristics from table condition_occurrence (1 of 1) for time ... > test-plotLargeScaleCharacteristics.R: Formatting result > test-plotLargeScaleCharacteristics.R: v Summarising large scale characteristics > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/3 > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/3 > test-summariseCharacteristics.R: i adding cohortIntersectFlag 3/3 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: i summarising cohort cohort_2 > test-summariseCharacteristics.R: i summarising cohort cohort_3 > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCharacteristics.R: i adding tableIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCohortOverlap.R: `result_id` is not present in result. > test-summariseCharacteristics.R: i summarising cohort cohort_2 > test-summariseCharacteristics.R: i summarising cohort cohort_3 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCohortTiming.R: i The following estimates will be computed: > test-summariseCohortTiming.R: * days_between_cohort_entries: min, q25, median, q75, max, density > test-summariseCohortTiming.R: ! Table is collected to memory as not all requested estimates are supported on the database side > test-summariseCohortTiming.R: > Start summary of data, at 2025-11-19 01:38:02.290234 > test-summariseCohortTiming.R: v Summary finished, at 2025-11-19 01:38:02.64753 > test-summariseCohortTiming.R: i The following estimates will be computed: > test-summariseCohortTiming.R: * days_between_cohort_entries: min, max > test-summariseCohortTiming.R: > Start summary of data, at 2025-11-19 01:38:03.674771 > test-summariseCohortTiming.R: v Summary finished, at 2025-11-19 01:38:03.805968 > test-summariseCohortTiming.R: i The following estimates will be computed: > test-summariseCohortTiming.R: * days_between_cohort_entries: density > test-summariseCohortTiming.R: ! Table is collected to memory as not all requested estimates are supported on the database side > test-summariseCohortTiming.R: > Start summary of data, at 2025-11-19 01:38:04.64965 > test-summariseCohortTiming.R: v Summary finished, at 2025-11-19 01:38:04.973858 > test-summariseCohortTiming.R: i The following estimates will be computed: > test-summariseCohortTiming.R: * days_between_cohort_entries: min, q25, median, q75, max, density > test-summariseCohortTiming.R: ! Table is collected to memory as not all requested estimates are supported on the database side > test-summariseCohortTiming.R: > Start summary of data, at 2025-11-19 01:38:07.698074 > test-summariseCohortTiming.R: v Summary finished, at 2025-11-19 01:38:08.967299 > test-summariseCohortTiming.R: i The following estimates will be computed: > test-summariseCohortTiming.R: * days_between_cohort_entries: density > test-summariseCohortTiming.R: ! Table is collected to memory as not all requested estimates are supported on the database side > test-summariseCohortTiming.R: > Start summary of data, at 2025-11-19 01:38:10.561613 > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCohortTiming.R: v Summary finished, at 2025-11-19 01:38:11.601428 > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to 0` -> `365_to_0` > test-summariseCohortTiming.R: i The following estimates will be computed: > test-summariseCohortTiming.R: * days_between_cohort_entries: min, q25, median, q75, max > test-summariseCohortTiming.R: ! Table is collected to memory as not all requested estimates are supported on the database side > test-summariseCohortTiming.R: > Start summary of data, at 2025-11-19 01:38:18.673126 > test-summariseCharacteristics.R: i adding cohortIntersectFlag 2/2 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to 0` -> `inf_to_0` > test-summariseCohortTiming.R: v Summary finished, at 2025-11-19 01:38:19.288412 > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-utilities.R: `group` is not present in settings. > test-utilities.R: `group` is not present in settings. > test-utilities.R: `group` is not present in settings. > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding tableIntersectCount 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding tableIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding tableIntersectDate 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding tableIntersectDays 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `1 to Inf` -> `1_to_inf` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort exposed > test-summariseCharacteristics.R: i summarising cohort unexposed > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectCount 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectDate 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-Inf to -1` -> `inf_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectDays 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `1 to Inf` -> `1_to_inf` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to -1` -> `365_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: i summarising cohort cohort_2 > test-summariseCharacteristics.R: v summariseCharacteristics finished! > test-summariseCharacteristics.R: i adding demographics columns > test-summariseCharacteristics.R: i adding cohortIntersectFlag 1/1 > test-summariseCharacteristics.R: window names casted to snake_case: > test-summariseCharacteristics.R: * `-365 to -1` -> `365_to_1` > test-summariseCharacteristics.R: i summarising data > test-summariseCharacteristics.R: i summarising cohort cohort_1 > test-summariseCharacteristics.R: i summarising cohort cohort_2 > test-summariseCharacteristics.R: v summariseCharacteristics finished! [ FAIL 0 | WARN 17 | SKIP 24 | PASS 234 ] ══ Skipped tests (24) ══════════════════════════════════════════════════════════ • On CRAN (22): 'test-benchmarkCohortCharacteristics.R:2:3', 'test-plotCharacteristics.R:2:3', 'test-plotCharacteristics.R:176:3', 'test-plotCohortCount.R:2:3', 'test-plotCohortOverlap.R:2:3', 'test-plotCohortTiming.R:2:3', 'test-plotCohortTiming.R:100:3', 'test-plotLargeScaleCharacteristics.R:3:3', 'test-summariseCohortCount.R:2:3', 'test-summariseLargeScaleCharacteristics.R:2:3', 'test-table.R:2:3', 'test-tableCharacteristics.R:2:3', 'test-tableCharacteristics.R:124:3', 'test-tableCohortAttrition.R:2:3', 'test-tableCohortCount.R:2:3', 'test-tableCohortOverlap.R:2:3', 'test-tableCohortTiming.R:2:3', 'test-tableLargeScaleCharacteristics.R:2:3', 'test-tableLargeScaleCharacteristics.R:80:3', 'test-summariseCharacteristics.R:1180:3', 'test-summariseCharacteristics.R:1425:3', 'test-summariseCharacteristics.R:1552:3' • empty test (2): 'test-plotLargeScaleCharacteristics.R:140:1', 'test-summariseCohortTiming.R:107:1' [ FAIL 0 | WARN 17 | SKIP 24 | PASS 234 ] > > proc.time() user system elapsed 3.84 0.43 192.56