downloading reverse dependencies ... downloading PhenotypeR_0.1.3.tar.gz ... ok downloading CohortConstructor_0.3.5.tar.gz ... ok downloading OmopViewer_0.2.0.tar.gz ... ok installing dependencies ‘CirceR’, ‘CodelistGenerator’, ‘CohortCharacteristics’, ‘CohortConstructor’, ‘DrugUtilisation’, ‘IncidencePrevalence’, ‘odbc’, ‘omock’, ‘OmopSketch’, ‘reactablefmtr’, ‘visOmopResults’ also installing the dependency ‘tippy’ begin installing package ‘tippy’ begin installing package ‘CodelistGenerator’ begin installing package ‘visOmopResults’ begin installing package ‘CohortConstructor’ begin installing package ‘omock’ begin installing package ‘CohortCharacteristics’ begin installing package ‘CirceR’ begin installing package ‘IncidencePrevalence’ begin installing package ‘odbc’ * installing *source* package ‘tippy’ ... ** this is package ‘tippy’ version ‘0.1.0’ ** package ‘tippy’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tippy) begin installing package ‘reactablefmtr’ * installing *source* package ‘CirceR’ ... ** this is package ‘CirceR’ version ‘1.3.3’ ** package ‘CirceR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CirceR) * installing *source* package ‘omock’ ... ** this is package ‘omock’ version ‘0.3.2’ ** package ‘omock’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (omock) * installing *source* package ‘CodelistGenerator’ ... ** this is package ‘CodelistGenerator’ version ‘3.4.1’ ** package ‘CodelistGenerator’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CodelistGenerator) begin installing package ‘DrugUtilisation’ * installing *source* package ‘visOmopResults’ ... ** this is package ‘visOmopResults’ version ‘1.0.2’ ** package ‘visOmopResults’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (visOmopResults) * installing *source* package ‘CohortCharacteristics’ ... ** this is package ‘CohortCharacteristics’ version ‘0.5.1’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CohortCharacteristics) * installing *source* package ‘IncidencePrevalence’ ... ** this is package ‘IncidencePrevalence’ version ‘1.2.0’ ** package ‘IncidencePrevalence’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (IncidencePrevalence) * installing *source* package ‘CohortConstructor’ ... ** this is package ‘CohortConstructor’ version ‘0.3.5’ ** package ‘CohortConstructor’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CohortConstructor) begin installing package ‘OmopSketch’ * installing *source* package ‘reactablefmtr’ ... ** this is package ‘reactablefmtr’ version ‘2.0.0’ ** package ‘reactablefmtr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (reactablefmtr) * installing *source* package ‘DrugUtilisation’ ... ** this is package ‘DrugUtilisation’ version ‘1.0.0’ ** package ‘DrugUtilisation’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DrugUtilisation) * installing *source* package ‘OmopSketch’ ... ** this is package ‘OmopSketch’ version ‘0.3.1’ ** package ‘OmopSketch’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (OmopSketch) * installing *source* package ‘odbc’ ... ** this is package ‘odbc’ version ‘1.6.1’ ** package ‘odbc’ successfully unpacked and MD5 sums checked ** using staged installation Found pkg-config cflags and libs! PKG_CFLAGS= PKG_LIBS=-lodbc ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp2ryTmv/R.INSTALL94e5e5b523ea8/odbc/src' (cd cctz && \ make libcctz.a CC="gcc-14 -std=gnu23" CXX="g++-14 -std=gnu++17" CXXFLAGS="-g -O2 -Wall -pedantic -mtune=native " AR="ar" ARFLAGS=rcs CXXPICFLAGS="-fpic") make[2]: Entering directory '/home/hornik/tmp/scratch/Rtmp2ryTmv/R.INSTALL94e5e5b523ea8/odbc/src/cctz' g++-14 -std=gnu++17 -g -O2 -Wall -pedantic -mtune=native -Wall -Iinclude -std=c++11 -pthread -O -fpic -MMD -c -o time_zone_format.o src/time_zone_format.cc g++-14 -std=gnu++17 -g -O2 -Wall -pedantic -mtune=native -Wall -Iinclude -std=c++11 -pthread -O -fpic -MMD -c -o time_zone_if.o src/time_zone_if.cc g++-14 -std=gnu++17 -g -O2 -Wall -pedantic -mtune=native -Wall -Iinclude -std=c++11 -pthread -O -fpic -MMD -c -o time_zone_impl.o src/time_zone_impl.cc g++-14 -std=gnu++17 -g -O2 -Wall -pedantic -mtune=native -Wall -Iinclude -std=c++11 -pthread -O -fpic -MMD -c -o time_zone_info.o src/time_zone_info.cc g++-14 -std=gnu++17 -g -O2 -Wall -pedantic -mtune=native -Wall -Iinclude -std=c++11 -pthread -O -fpic -MMD -c -o time_zone_libc.o src/time_zone_libc.cc g++-14 -std=gnu++17 -g -O2 -Wall -pedantic -mtune=native -Wall -Iinclude -std=c++11 -pthread -O -fpic -MMD -c -o time_zone_lookup.o src/time_zone_lookup.cc g++-14 -std=gnu++17 -g -O2 -Wall -pedantic -mtune=native -Wall -Iinclude -std=c++11 -pthread -O -fpic -MMD -c -o time_zone_posix.o src/time_zone_posix.cc ar rcs libcctz.a time_zone_format.o time_zone_if.o time_zone_impl.o time_zone_info.o time_zone_libc.o time_zone_lookup.o time_zone_posix.o make[2]: Leaving directory '/home/hornik/tmp/scratch/Rtmp2ryTmv/R.INSTALL94e5e5b523ea8/odbc/src/cctz' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Icctz/include -Inanodbc -I. -DBUILD_REAL_64_BIT_MODE -DNANODBC_ODBC_VERSION=SQL_OV_ODBC3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -c odbc_result.cpp -o odbc_result.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Icctz/include -Inanodbc -I. -DBUILD_REAL_64_BIT_MODE -DNANODBC_ODBC_VERSION=SQL_OV_ODBC3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -c connection.cpp -o connection.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Icctz/include -Inanodbc -I. -DBUILD_REAL_64_BIT_MODE -DNANODBC_ODBC_VERSION=SQL_OV_ODBC3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -DNANODBC_OVERALLOCATE_CHAR -c nanodbc/nanodbc.cpp -o nanodbc.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Icctz/include -Inanodbc -I. -DBUILD_REAL_64_BIT_MODE -DNANODBC_ODBC_VERSION=SQL_OV_ODBC3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -c result.cpp -o result.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Icctz/include -Inanodbc -I. -DBUILD_REAL_64_BIT_MODE -DNANODBC_ODBC_VERSION=SQL_OV_ODBC3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -c odbc_connection.cpp -o odbc_connection.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Icctz/include -Inanodbc -I. -DBUILD_REAL_64_BIT_MODE -DNANODBC_ODBC_VERSION=SQL_OV_ODBC3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Icctz/include -Inanodbc -I. -DBUILD_REAL_64_BIT_MODE -DNANODBC_ODBC_VERSION=SQL_OV_ODBC3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -c Iconv.cpp -o Iconv.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -Icctz/include -Inanodbc -I. -DBUILD_REAL_64_BIT_MODE -DNANODBC_ODBC_VERSION=SQL_OV_ODBC3 -fpic -fpic -g -O2 -Wall -pedantic -mtune=native -c utils.cpp -o utils.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o odbc.so odbc_result.o connection.o nanodbc.o result.o odbc_connection.o RcppExports.o Iconv.o utils.o -lodbc -Lcctz -lcctz -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp2ryTmv/R.INSTALL94e5e5b523ea8/odbc/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-odbc/00new/odbc/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (odbc) checking CohortCharacteristics_0.5.1.tar.gz ... checking PhenotypeR_0.1.3.tar.gz ... checking CohortConstructor_0.3.5.tar.gz ... checking OmopViewer_0.2.0.tar.gz ... Depends: Package: CohortCharacteristics Depends: R (>= 4.1) Imports: CDMConnector (>= 1.6.0), dplyr, tidyr, rlang, cli, stringr, omopgenerics (>= 0.4.0), PatientProfiles (>= 1.3.1), snakecase, lifecycle, purrr Timings: user system elapsed CohortCharacteristics 401.107 18.248 326.872 Results: Check status summary: NOTE OK Source packages 1 0 Reverse depends 1 2 Check results summary: CohortCharacteristics ... NOTE * checking examples ... [14s/14s] NOTE rdepends_CohortConstructor ... OK rdepends_OmopViewer ... NOTE * checking DESCRIPTION meta-information ... NOTE rdepends_PhenotypeR ... OK