* using log directory 'd:/RCompile/CRANincoming/R-devel/CohortCharacteristics.Rcheck'
* using R Under development (unstable) (2024-05-02 r86512 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'CohortCharacteristics/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'CohortCharacteristics' version '0.2.0'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [12s] Note_to_CRAN_maintainers
Maintainer: 'Marti Catala <marti.catalasabate@ndorms.ox.ac.uk>'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking serialization versions ... OK
* checking whether package 'CohortCharacteristics' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [15s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [187s] ERROR
  Running 'spelling.R'
  Running 'testthat.R' [186s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  > library(CohortCharacteristics)
  > 
  > test_check("CohortCharacteristics")
  Starting 2 test processes
  [ FAIL 1 | WARN 0 | SKIP 10 | PASS 136 ]
  
  ══ Skipped tests (10) ══════════════════════════════════════════════════════════
  • On CRAN (9): 'test-plotCharacteristics.R:2:3',
    'test-plotLargeScaleCharacteristics.R:3:3', 'test-plotSummarised.R:2:3',
    'test-plotSummarised.R:91:3', 'test-plotSummarised.R:197:3',
    'test-plotSummarised.R:299:3',
    'test-summariseLargeScaleCharacteristics.R:2:3',
    'test-tableSummarised.R:2:3', 'test-tableSummarised.R:123:3'
  • empty test (1): 'test-tableSummarised.R:262:1'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-summariseCharacteristics.R:1122:3'): arguments conceptIntersect ──
  Error in `eunomiaDir(datasetName = dataset_name, cdmVersion = cdm_version, 
      databaseFile = database_file)`: Set the `EUNOMIA_DATA_FOLDER` environment variable in your .Renviron file.
  Backtrace:
      ▆
   1. ├─DBI::dbConnect(duckdb::duckdb(), CDMConnector::eunomia_dir()) at test-summariseCharacteristics.R:1122:3
   2. ├─DBI::dbConnect(duckdb::duckdb(), CDMConnector::eunomia_dir())
   3. │ └─duckdb (local) .local(drv, ...)
   4. │   └─duckdb:::path_normalize(dbdir)
   5. └─CDMConnector::eunomia_dir()
   6.   └─CDMConnector::eunomiaDir(datasetName = dataset_name, cdmVersion = cdm_version, databaseFile = database_file)
   7.     └─rlang::abort("Set the `EUNOMIA_DATA_FOLDER` environment variable in your .Renviron file.")
  
  [ FAIL 1 | WARN 0 | SKIP 10 | PASS 136 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [150s] OK
* checking PDF version of manual ... [22s] OK
* checking HTML version of manual ... OK
* DONE
Status: 1 ERROR