on_cran <- function(){ !interactive() && !isTRUE(as.logical(Sys.getenv("NOT_CRAN", "false"))) } if (!on_cran()) { withr::local_envvar( R_USER_CACHE_DIR = tempfile(), .local_envir = teardown_env(), EUNOMIA_DATA_FOLDER = Sys.getenv("EUNOMIA_DATA_FOLDER", unset = tempfile()) ) CDMConnector::downloadEunomiaData(overwrite = TRUE) } connection <- function(dbToTest) { switch( dbToTest, "duckdb" = list( con = DBI::dbConnect(duckdb::duckdb(), ":memory:"), write_schema = "main" ), "sql server" = list( con = DBI::dbConnect( odbc::odbc(), Driver = "ODBC Driver 18 for SQL Server", Server = Sys.getenv("CDM5_SQL_SERVER_SERVER"), Database = Sys.getenv("CDM5_SQL_SERVER_CDM_DATABASE"), UID = Sys.getenv("CDM5_SQL_SERVER_USER"), PWD = Sys.getenv("CDM5_SQL_SERVER_PASSWORD"), TrustServerCertificate = "yes", Port = 1433 ), write_schema = Sys.getenv("CDM5_SQL_SERVER_OHDSI_SCHEMA") ), "redshift" = list( con = DBI::dbConnect( RPostgres::Redshift(), dbname = Sys.getenv("CDM5_REDSHIFT_DBNAME"), port = Sys.getenv("CDM5_REDSHIFT_PORT"), host = Sys.getenv("CDM5_REDSHIFT_HOST"), user = Sys.getenv("CDM5_REDSHIFT_USER"), password = Sys.getenv("CDM5_REDSHIFT_PASSWORD") ), write_schema = Sys.getenv("CDM5_REDSHIFT_SCRATCH_SCHEMA") ) ) } connectionDetails <- connection(Sys.getenv("DB_TO_TEST", "duckdb")) emptyCohort <- dplyr::tibble( cohort_definition_id = numeric(), subject_id = numeric(), cohort_start_date = as.Date(character()), cohort_end_date = as.Date(character()) )