* using log directory ‘/srv/hornik/tmp/CRAN/CohortAlgebra.Rcheck’
* using R Under development (unstable) (2023-09-10 r85120)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 16.0.6 (11)
    GNU Fortran (Debian 13.2.0-2) 13.2.0
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘CohortAlgebra/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘CohortAlgebra’ version ‘0.0.4’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [3s/4s] NOTE
Maintainer: ‘Gowtham Rao <rao@ohdsi.org>’

New submission

Found the following (possibly) invalid URLs:
  URL: https://ohdsi.github.io/CohortAlgebra/
    From: DESCRIPTION
          man/CohortAlgebra-package.Rd
    Status: 404
    Message: Not Found

Size of tarball: 8513740 bytes
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘CohortAlgebra’ can be installed ... [4s/3s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... NOTE
Non-standard files/directories found at top level:
  ‘7576testEunomia.sqlite’ ‘cran-comments.md’ ‘man-roxygen’ ‘sql’
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [5s/5s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [1s/1s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [3s/3s] OK
  Running ‘testOracle.R’ [0s/0s]
  Running ‘testPostgres.R’ [1s/1s]
  Running ‘testRedshift.R’ [0s/0s]
  Running ‘testSqlServer.R’ [1s/1s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking re-building of vignette outputs ... [1s/1s] ERROR
Error(s) in re-building vignettes:
  ...
--- re-building ‘HowToUseCohortAlgebraRPackage.Rmd’ using rmarkdown
trying URL ‘https://ohdsi.github.io/DatabaseConnectorJars/postgresqlV42.2.18.zip’
Content type 'application/zip' length 931791 bytes (909 KB)
==================================================
downloaded 909 KB


Quitting from lines 95-109 [unnamed-chunk-6] (HowToUseCohortAlgebraRPackage.Rmd)
Error: processing vignette ‘HowToUseCohortAlgebraRPackage.Rmd’ failed with diagnostics:
Error: database name not included in server string but is required for PostgreSQL. Please specify server as <host>/<database>
--- failed re-building ‘HowToUseCohortAlgebraRPackage.Rmd’

SUMMARY: processing the following file failed:
  ‘HowToUseCohortAlgebraRPackage.Rmd’

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... [3s/2s] OK
* checking HTML version of manual ... [0s/0s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR, 2 NOTEs