downloading reverse dependencies ‘CohortSymmetry’, ‘DrugUtilisation’, ‘PhenotypeR’, ‘CohortCharacteristics’, ‘CohortConstructor’, ‘CohortSurvival’, ‘MeasurementDiagnostics’, ‘OmopSketch’, ‘OmopViewer’, ‘PatientProfiles’ trying URL 'file:///data/Repositories/CRAN/src/contrib/CohortSymmetry_0.2.4.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/DrugUtilisation_1.0.5.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/PhenotypeR_0.2.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/CohortCharacteristics_1.1.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/CohortConstructor_0.6.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/CohortSurvival_1.1.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/MeasurementDiagnostics_0.2.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/OmopSketch_1.0.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/OmopViewer_0.6.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/PatientProfiles_1.4.4.tar.gz' installing dependencies ‘CirceR’, ‘CodelistGenerator’, ‘CohortCharacteristics’, ‘CohortConstructor’, ‘CohortSurvival’, ‘DrugUtilisation’, ‘IncidencePrevalence’, ‘MeasurementDiagnostics’, ‘OmopSketch’, ‘OmopViewer’, ‘reactablefmtr’, ‘shiny.fluent’, ‘shinyTree’ also installing the dependency ‘shiny.react’ begin installing package ‘shiny.react’ begin installing package ‘CohortConstructor’ begin installing package ‘CohortSurvival’ begin installing package ‘CohortCharacteristics’ begin installing package ‘IncidencePrevalence’ begin installing package ‘reactablefmtr’ begin installing package ‘CirceR’ begin installing package ‘OmopViewer’ begin installing package ‘shinyTree’ begin installing package ‘CodelistGenerator’ * installing *source* package ‘shiny.react’ ... ** this is package ‘shiny.react’ version ‘0.4.0’ ** package ‘shiny.react’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (shiny.react) begin installing package ‘shiny.fluent’ * installing *source* package ‘CirceR’ ... ** this is package ‘CirceR’ version ‘1.3.3’ ** package ‘CirceR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CirceR) * installing *source* package ‘shinyTree’ ... ** this is package ‘shinyTree’ version ‘0.3.1’ ** package ‘shinyTree’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (shinyTree) * installing *source* package ‘OmopViewer’ ... ** this is package ‘OmopViewer’ version ‘0.6.0’ ** package ‘OmopViewer’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (OmopViewer) * installing *source* package ‘CohortSurvival’ ... ** this is package ‘CohortSurvival’ version ‘1.1.0’ ** package ‘CohortSurvival’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CohortSurvival) * installing *source* package ‘CohortCharacteristics’ ... ** this is package ‘CohortCharacteristics’ version ‘1.1.0’ ** package ‘CohortCharacteristics’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CohortCharacteristics) * installing *source* package ‘shiny.fluent’ ... ** this is package ‘shiny.fluent’ version ‘0.4.0’ ** package ‘shiny.fluent’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (shiny.fluent) * installing *source* package ‘IncidencePrevalence’ ... ** this is package ‘IncidencePrevalence’ version ‘1.2.1’ ** package ‘IncidencePrevalence’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (IncidencePrevalence) * installing *source* package ‘CodelistGenerator’ ... ** this is package ‘CodelistGenerator’ version ‘4.0.0’ ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CodelistGenerator) begin installing package ‘DrugUtilisation’ * installing *source* package ‘reactablefmtr’ ... ** this is package ‘reactablefmtr’ version ‘2.0.0’ ** package ‘reactablefmtr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (reactablefmtr) * installing *source* package ‘CohortConstructor’ ... ** this is package ‘CohortConstructor’ version ‘0.6.0’ ** package ‘CohortConstructor’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CohortConstructor) begin installing package ‘OmopSketch’ begin installing package ‘MeasurementDiagnostics’ * installing *source* package ‘MeasurementDiagnostics’ ... ** this is package ‘MeasurementDiagnostics’ version ‘0.2.0’ ** package ‘MeasurementDiagnostics’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MeasurementDiagnostics) * installing *source* package ‘DrugUtilisation’ ... ** this is package ‘DrugUtilisation’ version ‘1.0.5’ ** package ‘DrugUtilisation’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DrugUtilisation) * installing *source* package ‘OmopSketch’ ... ** this is package ‘OmopSketch’ version ‘1.0.0’ ** package ‘OmopSketch’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (OmopSketch) checking CodelistGenerator_4.0.0.tar.gz ... checking CohortSymmetry_0.2.4.tar.gz ... checking DrugUtilisation_1.0.5.tar.gz ... checking PhenotypeR_0.2.0.tar.gz ... checking CohortCharacteristics_1.1.0.tar.gz ... checking CohortConstructor_0.6.0.tar.gz ... checking CohortSurvival_1.1.0.tar.gz ... checking MeasurementDiagnostics_0.2.0.tar.gz ... checking OmopSketch_1.0.0.tar.gz ... checking OmopViewer_0.6.0.tar.gz ... checking PatientProfiles_1.4.4.tar.gz ... Depends: Package: CodelistGenerator Depends: R (>= 4.1) Imports: DBI (>= 1.1.0), dplyr (>= 1.1.0), omopgenerics (>= 1.3.4), rlang (>= 1.0.0), glue (>= 1.5.0), stringr (>= 1.6.0), stringi (>= 1.8.1), tidyr (>= 1.2.0), cli (>= 3.1.0), purrr, clock, PatientProfiles (>= 1.4.4), vctrs, jsonlite, lifecycle Timings: user system elapsed CodelistGenerator 259.591 25.538 190.756 Results: Check status summary: ERROR OK Source packages 0 1 Reverse depends 1 9 Check results summary: CodelistGenerator ... OK rdepends_CohortCharacteristics ... OK rdepends_CohortConstructor ... OK rdepends_CohortSurvival ... OK rdepends_CohortSymmetry ... OK rdepends_DrugUtilisation ... OK rdepends_MeasurementDiagnostics ... OK rdepends_OmopSketch ... OK rdepends_OmopViewer ... OK rdepends_PatientProfiles ... OK rdepends_PhenotypeR ... ERROR * checking dependencies in R code ... WARNING * checking tests ... [12s/12s] ERROR * checking re-building of vignette outputs ... [316s/199s] ERROR Check results changes: Package: PhenotypeR Check: dependencies in R code New result: WARNING Package: PhenotypeR Check: re-building of vignette outputs New result: ERROR Package: PhenotypeR Check: tests New result: ERROR