* using log directory ‘/home/hornik/tmp/CRAN_special_noSuggests/CodeDepends.Rcheck’ * using R Under development (unstable) (2026-02-23 r89469) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc-15 (Debian 15.2.0-12) 15.2.0 GNU Fortran (Debian 15.2.0-12) 15.2.0 * running under: Debian GNU/Linux forky/sid * using session charset: UTF-8 * current time: 2026-02-24 06:04:05 UTC * checking for file ‘CodeDepends/DESCRIPTION’ ... OK * this is package ‘CodeDepends’ version ‘0.6.7’ * checking CRAN incoming feasibility ... [3s/3s] NOTE Maintainer: ‘Gabriel Becker ’ New submission Package was archived on CRAN CRAN repository db overrides: X-CRAN-Comment: Archived on 2025-12-17 as issues were not corrected in time * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking serialization versions ... OK * checking whether package ‘CodeDepends’ can be installed ... [5s/5s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [1s/1s] OK * checking whether the package can be loaded with stated dependencies ... [1s/1s] OK * checking whether the package can be unloaded cleanly ... [1s/1s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK * checking whether the namespace can be unloaded cleanly ... [1s/1s] OK * checking loading without being on the library search path ... [1s/1s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [7s/7s] OK * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking include directives in Makefiles ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [3s/3s] ERROR Running examples in ‘CodeDepends-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: highlightCode > ### Title: Display R code with highlighting of variables, links to > ### functions and packages > ### Aliases: highlightCode > ### Keywords: programming > > ### ** Examples > > f = system.file("samples", "sitepairs.R", package = "CodeDepends") > ## url checking takes a while, too long for CRAN example > fout <- file.path(tempdir(), "foo.html") > highlightCode(f, fout, checkURLs=FALSE) Loading required namespace: highlight Failed with error: ‘there is no package called ‘highlight’’ Error in highlightCode(f, fout, checkURLs = FALSE) : Unable to highlight code without the highlight and/or RJSONIO package(s) Execution halted * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [4s/4s] ERROR Running ‘draw.R’ [1s/1s] Running ‘inputs.R’ [1s/1s] Running ‘thread.R’ [1s/1s] Running ‘varDeps.R’ [1s/1s] Running the tests in ‘tests/draw.R’ failed. Complete output: > library(CodeDepends) > library(Rgraphviz) Error in library(Rgraphviz) : there is no package called 'Rgraphviz' Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [0s/0s] OK * checking PDF version of manual ... [3s/3s] OK * checking HTML version of manual ... [1s/1s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 2 ERRORs, 1 NOTE