* using log directory 'd:/RCompile/CRANincoming/R-devel/CoDaLoMic.Rcheck' * using R Under development (unstable) (2024-12-15 r87442 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.3.0 GNU Fortran (GCC) 13.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'CoDaLoMic/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'CoDaLoMic' version '0.1.0' * package encoding: UTF-8 * checking CRAN incoming feasibility ... NOTE Maintainer: 'Irene Creus Martí ' New submission Possibly misspelled words in DESCRIPTION: Creus (11:191, 11:218, 11:248) Microbiome (3:45) al (11:207, 11:234, 11:264) et (11:204, 11:231, 11:261) microbiome (11:64) * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking serialization versions ... OK * checking whether package 'CoDaLoMic' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... NOTE Author field differs from that derived from Authors@R Author: 'Irene Creus Martí [cre, aut]' Authors@R: 'Irene Creus Martí [aut, cre]' * checking top-level files ... NOTE Non-standard file/directory found at top level: 'LICENSE.md' * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE Graphics: no visible binding for global variable 'value' Graphics: no visible binding for global variable 'variable' GraphicsPrediction: no visible binding for global variable 'value' GraphicsPrediction: no visible binding for global variable 'variable' GraphicsPredictionBPBM: no visible binding for global variable 'value' GraphicsPredictionBPBM: no visible binding for global variable 'variable' PCAbiplot: no visible binding for global variable 'x' PCAbiplot: no visible binding for global variable 'y' modelBPBM: no visible binding for global variable 'ep' modelBPBM: no visible global function definition for 'inprod' modelBPBM: no visible binding for global variable 'a' modelBPBM: no visible binding for global variable 'vectorPB' modelBPBM: no visible binding for global variable 'BB' modelBPBM: no visible global function definition for 'pow' modelBPBM: no visible binding for global variable 'sdgamma' Undefined global functions or variables: BB a ep inprod pow sdgamma value variable vectorPB x y * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... [42s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [165s] OK Running 'testthat.R' [165s] * checking PDF version of manual ... [15s] OK * checking HTML version of manual ... OK * DONE Status: 4 NOTEs