* using log directory ‘/srv/hornik/tmp/CRAN_pretest/CoDaLoMic.Rcheck’
* using R Under development (unstable) (2024-12-15 r87442)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 19.1.1 (1)
    Debian flang-new version 19.1.1 (1)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘CoDaLoMic/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘CoDaLoMic’ version ‘0.1.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [3s/3s] NOTE
Maintainer: ‘Irene Creus Martí <ircrmar@mat.upv.es>’

New submission

Possibly misspelled words in DESCRIPTION:
  Creus (11:191, 11:217, 11:246)
  Martí (11:197, 11:223, 11:252)
  Microbiome (3:45)
  al (11:206, 11:232, 11:261)
  et (11:203, 11:229, 11:258)
  microbiome (11:64)
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘CoDaLoMic’ can be installed ... [2s/2s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... NOTE
Author field differs from that derived from Authors@R
  Author:    ‘Irene Creus Martí [cre, aut]’
  Authors@R: ‘Irene Creus Martí [aut, cre]’

* checking top-level files ... NOTE
Non-standard file/directory found at top level:
  ‘LICENSE.md’
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s/0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
* checking loading without being on the library search path ... [0s/0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [5s/5s] NOTE
Graphics: no visible binding for global variable ‘value’
Graphics: no visible binding for global variable ‘variable’
GraphicsPrediction: no visible binding for global variable ‘value’
GraphicsPrediction: no visible binding for global variable ‘variable’
GraphicsPredictionBPBM: no visible binding for global variable ‘value’
GraphicsPredictionBPBM: no visible binding for global variable
  ‘variable’
PCAbiplot: no visible binding for global variable ‘x’
PCAbiplot: no visible binding for global variable ‘y’
modelBPBM: no visible binding for global variable ‘ep’
modelBPBM: no visible global function definition for ‘inprod’
modelBPBM: no visible binding for global variable ‘a’
modelBPBM: no visible binding for global variable ‘vectorPB’
modelBPBM: no visible binding for global variable ‘BB’
modelBPBM: no visible global function definition for ‘pow’
modelBPBM: no visible binding for global variable ‘sdgamma’
Undefined global functions or variables:
  BB a ep inprod pow sdgamma value variable vectorPB x y
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [15s/25s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [46s/89s] OK
  Running ‘testthat.R’ [46s/89s]
* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [1s/1s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 4 NOTEs