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> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
> 
> library(testthat)
> library(ClimaRep)
> 
> test_check("ClimaRep")
terra 1.8.54

Attaching package: 'terra'

The following objects are masked from 'package:testthat':

    compare, describe

Linking to GEOS 3.13.1, GDAL 3.11.0, PROJ 9.6.0; sf_use_s2() is TRUE
--- VIF Filtering Summary ---
Kept layers: varA, varC, varE, varF, varG 
Excluded layers: varD, varB 

Pearson correlation matrix of original data:
        varA    varB   varC   varD    varE    varF   varG
varA  1.0000  0.8870 0.0087 0.0938 -0.0745  0.5855 0.0029
varB  0.8870  1.0000 0.0043 0.0997 -0.0769  0.6556 0.0000
varC  0.0087  0.0043 1.0000 0.8523  0.0517  0.5694 0.8374
varD  0.0938  0.0997 0.8523 1.0000  0.0576  0.7108 0.9560
varE -0.0745 -0.0769 0.0517 0.0576  1.0000 -0.0257 0.0649
varF  0.5855  0.6556 0.5694 0.7108 -0.0257  1.0000 0.6352
varG  0.0029  0.0000 0.8374 0.9560  0.0649  0.6352 1.0000

Final VIF values for kept variables:
        VIF
varA 2.3495
varC 3.3984
varE 1.0121
varF 3.9769
varG 4.5129
----------------------------
VIF filtering completed
--- VIF Filtering Summary ---
Kept layers: varA, varC, varE, varF, varG 
Excluded layers: varD, varB 

Pearson correlation matrix of original data:
        varA    varB   varC   varD    varE    varF   varG
varA  1.0000  0.8870 0.0087 0.0938 -0.0745  0.5816 0.0028
varB  0.8870  1.0000 0.0043 0.0997 -0.0769  0.6513 0.0003
varC  0.0087  0.0043 1.0000 0.8523  0.0517  0.5676 0.8341
varD  0.0938  0.0997 0.8523 1.0000  0.0576  0.7077 0.9529
varE -0.0745 -0.0769 0.0517 0.0576  1.0000 -0.0256 0.0653
varF  0.5816  0.6513 0.5676 0.7077 -0.0256  1.0000 0.6305
varG  0.0028  0.0003 0.8341 0.9529  0.0653  0.6305 1.0000

Final VIF values for kept variables:
        VIF
varA 2.2832
varC 3.3473
varE 1.0121
varF 3.8325
varG 4.3545
----------------------------
VIF filtering completed
Validating Coordinate Reference Systems (CRS)
Starting per-polygon processing:

Processing polygon: pol_1 (1 of 2)

Processing polygon: pol_2 (2 of 2)
All processes were completed
Output files in:  D:\temp\2025_06_17_09_30_17_7830\RtmpsLvTjb/mh_overlay_test 
Processing 2 rasters from D:\temp\2025_06_17_09_30_17_7830\RtmpsLvTjb/mh_overlay_test/Change
Calculating counts for category: Lost (value = 2) 
Calculating counts for category: Retained (value = 1) 
Calculating counts for category: Novel (value = 3) 
All processes were completed
Output files in:  D:\temp\2025_06_17_09_30_17_7830\RtmpsLvTjb/mh_overlay_test/Change/overlay/ClimaRep_overlay.tif 

Attaching package: 'tidyterra'

The following object is masked from 'package:stats':

    filter

--- VIF Filtering Summary ---
Kept layers: varA, varC, varE, varF, varG 
Excluded layers: varD, varB 

Pearson correlation matrix of original data:
        varA    varB   varC   varD    varE    varF   varG
varA  1.0000  0.8870 0.0087 0.0938 -0.0745  0.5816 0.0028
varB  0.8870  1.0000 0.0043 0.0997 -0.0769  0.6513 0.0003
varC  0.0087  0.0043 1.0000 0.8523  0.0517  0.5676 0.8341
varD  0.0938  0.0997 0.8523 1.0000  0.0576  0.7077 0.9529
varE -0.0745 -0.0769 0.0517 0.0576  1.0000 -0.0256 0.0653
varF  0.5816  0.6513 0.5676 0.7077 -0.0256  1.0000 0.6305
varG  0.0028  0.0003 0.8341 0.9529  0.0653  0.6305 1.0000

Final VIF values for kept variables:
        VIF
varA 2.2832
varC 3.3473
varE 1.0121
varF 3.8325
varG 4.3545
----------------------------
VIF filtering completed
Validating and adjusting Coordinate Reference Systems (CRS)
Starting per-polygon processing:

Processing polygon: pol_1 (1 of 2)

Processing polygon: pol_2 (2 of 2)
All processes were completed
Output files in:  D:\temp\2025_06_17_09_30_17_7830\RtmpsLvTjb/mh_rep_test 
--- VIF Filtering Summary ---
Kept layers: varA, varC, varE, varF, varG 
Excluded layers: varD, varB 

Pearson correlation matrix of original data:
        varA    varB   varC   varD    varE    varF   varG
varA  1.0000  0.8870 0.0087 0.0938 -0.0745  0.5816 0.0028
varB  0.8870  1.0000 0.0043 0.0997 -0.0769  0.6513 0.0003
varC  0.0087  0.0043 1.0000 0.8523  0.0517  0.5676 0.8341
varD  0.0938  0.0997 0.8523 1.0000  0.0576  0.7077 0.9529
varE -0.0745 -0.0769 0.0517 0.0576  1.0000 -0.0256 0.0653
varF  0.5816  0.6513 0.5676 0.7077 -0.0256  1.0000 0.6305
varG  0.0028  0.0003 0.8341 0.9529  0.0653  0.6305 1.0000

Final VIF values for kept variables:
        VIF
varA 2.2832
varC 3.3473
varE 1.0121
varF 3.8325
varG 4.3545
----------------------------
VIF filtering completed
Validating Coordinate Reference Systems (CRS)
Starting per-polygon processing:

Processing polygon: pol_1 (1 of 2)

Processing polygon: pol_2 (2 of 2)
All processes were completed
Output files in:  D:\temp\2025_06_17_09_30_17_7830\RtmpsLvTjb/mh_rep_ch_test 
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 21 ]
> 
> proc.time()
   user  system elapsed 
  13.67    1.46   15.15