* using log directory ‘/srv/hornik/tmp/CRAN/ClassDiscovery.Rcheck’ * using R Under development (unstable) (2024-04-27 r86487) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 17.0.6 (5) Debian flang-new version 17.0.6 (5) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘ClassDiscovery/DESCRIPTION’ ... OK * this is package ‘ClassDiscovery’ version ‘3.4.5’ * checking CRAN incoming feasibility ... [4s/4s] Note_to_CRAN_maintainers Maintainer: ‘Kevin R. Coombes ’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking serialization versions ... OK * checking whether package ‘ClassDiscovery’ can be installed ... [2s/2s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [0s/0s] OK * checking whether the package can be loaded with stated dependencies ... [0s/0s] OK * checking whether the package can be unloaded cleanly ... [0s/0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK * checking whether the namespace can be unloaded cleanly ... [0s/0s] OK * checking loading without being on the library search path ... [0s/0s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [3s/3s] OK * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [3s/3s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [7s/7s] OK Running ‘exprSet-example.R’ [2s/2s] Comparing ‘exprSet-example.Rout’ to ‘exprSet-example.Rout.save’ ... OK Running ‘test00-color.R’ [0s/0s] Comparing ‘test00-color.Rout’ to ‘test00-color.Rout.save’ ... OK Running ‘test01-distance.R’ [0s/0s] Comparing ‘test01-distance.Rout’ to ‘test01-distance.Rout.save’ ... OK Running ‘test02-cluster.R’ [0s/0s] Comparing ‘test02-cluster.Rout’ to ‘test02-cluster.Rout.save’ ... OK Running ‘test02.1-just.R’ [0s/0s] Comparing ‘test02.1-just.Rout’ to ‘test02.1-just.Rout.save’ ... OK Running ‘test03-boot.R’ [1s/1s] Comparing ‘test03-boot.Rout’ to ‘test03-boot.Rout.save’ ... OK Running ‘test04-perturb.R’ [1s/1s] Comparing ‘test04-perturb.Rout’ to ‘test04-perturb.Rout.save’ ... OK Running ‘test04.1-gpca.R’ [0s/0s] Comparing ‘test04.1-gpca.Rout’ to ‘test04.1-gpca.Rout.save’ ... OK Running ‘test05-spca.R’ [0s/0s] Comparing ‘test05-spca.Rout’ to ‘test05-spca.Rout.save’ ... OK Running ‘test06-mosaic.R’ [1s/1s] Comparing ‘test06-mosaic.Rout’ to ‘test06-mosaic.Rout.save’ ... OK Running ‘test07-pcanova.R’ [0s/0s] Comparing ‘test07-pcanova.Rout’ to ‘test07-pcanova.Rout.save’ ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [6s/6s] OK * checking PDF version of manual ... [3s/3s] OK * checking HTML version of manual ... [1s/1s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: OK