* using log directory 'd:/RCompile/CRANincoming/R-devel/CircaCP.Rcheck'
* using R Under development (unstable) (2025-09-27 r88882 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'CircaCP/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'CircaCP' version '0.1.0'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'The package maintainer <schen3@vcu.edu>'

New submission

Possibly misspelled words in DESCRIPTION:
  CircaCP (8:42)
  actigraphy (4:9, 8:135, 8:620)
  analzying (3:63)
  cosinor (8:640)
  interdaily (8:499)
  intradaily (8:521)
  mathemtaical (8:240)
  mesor (8:484)
  phasor (8:491)

Unknown, possibly misspelled, fields in DESCRIPTION:
  'Reference'

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Shanshan",
                      family = "Chen",
                      role = "aut"),
               person(given = "Jonathon",
                      family = "Jacobs",
                      role = "aut"),
               person(given = c("The", "package"),
                      family = "maintainer",
                      role = "cre",
                      email = "schen3@vcu.edu"))
as necessary.

The Title field should be in title case. Current version is:
  'A sleep and circadian metrics estimation algorithm for analzying actigraphy data'
In title case that is:
  'A Sleep and Circadian Metrics Estimation Algorithm for Analzying Actigraphy Data'

The Description field contains
  https://royalsocietypublishing.org/doi/epdf/10.1098/rsos.231468. Sleep
Please enclose URLs in angle brackets (<...>).

DESCRIPTION fields with placeholder content:
  Maintainer: The package maintainer <schen3@vcu.edu>
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .Rd2pdf79633
  .Rd2pdf81579
  .Rd2pdf81957
  .Rd2pdf82610
  .Rd2pdf83007
  .Rd2pdf83387
  .Rd2pdf83759
  .Rd2pdf84158
  .Rd2pdf84579
These were most likely included in error. See section 'Package
structure' in the 'Writing R Extensions' manual.

CRAN-pack does not know about
  .Rd2pdf79633
  .Rd2pdf81579
  .Rd2pdf81957
  .Rd2pdf82610
  .Rd2pdf83007
  .Rd2pdf83387
  .Rd2pdf83759
  .Rd2pdf84158
  .Rd2pdf84579
* checking for portable file names ... OK
* checking whether package 'CircaCP' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... NOTE
Non-standard files/directories found at top level:
  'CircaCP-package.R' 'CircaCP_0.1.0.pdf' 'RPackageCheckCompile.R'
  'actigraphy.R'
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... WARNING
Found the following directories with names of Rd2pdf directories:
  ./.Rd2pdf79633
  ./.Rd2pdf81579
  ./.Rd2pdf81957
  ./.Rd2pdf82610
  ./.Rd2pdf83007
  ./.Rd2pdf83387
  ./.Rd2pdf83759
  ./.Rd2pdf84158
  ./.Rd2pdf84579
Most likely, these were included erroneously.
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... WARNING
'::' or ':::' import not declared from: 'tibble'
'loadNamespace' or 'requireNamespace' call not declared from: 'tibble'
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  'CP2label' 'NHANES_11111' 'actigraphy' 'circ_sd_minutes' 'mse'
  'nllag' 'prob2vect'
Undocumented data sets:
  'NHANES_11111' 'actigraphy'
All user-level objects in a package should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... WARNING
Undocumented arguments in Rd file 'import_acti_file.Rd'
  'drop_original_activity_cols'
Documented arguments not in \usage in Rd file 'import_acti_file.Rd':
  'id'

Undocumented arguments in Rd file 'screen_wear.Rd'
  'date_col' 'time_col' 'activity_col'

Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... NONE
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... ERROR
  Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(CircaCP)
  > 
  > test_check("CircaCP")
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-all.R:21:3'): all functions ────────────────────────────────────
  Error in `import_acti_file(csv, "Date", "Time", "MIMS")`: Needs tibble
  Backtrace:
      ▆
   1. └─CircaCP::import_acti_file(csv, "Date", "Time", "MIMS") at test-all.R:21:3
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building 'getting-started.Rmd' using rmarkdown

Quitting from getting-started.Rmd:29-35 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `import_acti_file()`:
! Needs tibble
---
Backtrace:
    ▆
 1. └─CircaCP::import_acti_file(csv, "Date", "Time", "MIMS")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'getting-started.Rmd' failed with diagnostics:
Needs tibble
--- failed re-building 'getting-started.Rmd'

SUMMARY: processing the following file failed:
  'getting-started.Rmd'

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... [20s] OK
* checking HTML version of manual ... OK
* DONE
Status: 2 ERRORs, 4 WARNINGs, 3 NOTEs