* using log directory 'd:/RCompile/CRANincoming/R-devel/CimpleG.Rcheck'
* using R Under development (unstable) (2025-09-29 r88883 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'CimpleG/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'CimpleG' version '0.0.5.9032'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Tiago F.V. Maié <tiagomaie@hotmail.com>'

New submission

Version contains large components (0.0.5.9032)

Possibly misspelled words in DESCRIPTION:
  CimpleG (3:8)
  CpG (3:36, 10:47)
  DNAm (10:52)
  Deconvolution (4:9)
  deconvolution (11:35)

Unknown, possibly misspelled, fields in DESCRIPTION:
  'Remotes'

The Title field starts with the package name.
The Title field should be in title case. Current version is:
  'CimpleG - Individual/Single CpG sites For Classification and Deconvolution'
In title case that is:
  'CimpleG - Individual/Single CpG Sites for Classification and Deconvolution'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'CimpleG' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... NOTE
Unexported object imported by a ':::' call: 'workflows:::predict.workflow'
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [34s] NOTE
Examples with CPU (user + system) or elapsed time > 10s
                    user system elapsed
get_cpg_annotation 20.86   4.95   23.67
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [177s] ERROR
  Running 'spelling.R'
  Running 'testthat.R' [177s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(CimpleG)
  --------------------------
  CimpleG version 0.0.5.9032
  --------------------------
  > 
  > test_check("CimpleG")
  Starting 2 test processes
  [ FAIL 3 | WARN 0 | SKIP 1 | PASS 63 ]
  
  ══ Skipped tests (1) ═══════════════════════════════════════════════════════════
  • parallel not working properly locally (1): 'test8-CimpleG-parallel.R:4:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test1-CimpleG-decisiontree.R:18:3'): signatures are generated w/ decision_tree ──
  `res` (`actual`) not equal to c(0.77, 0.98) (`expected`).
  
    `actual`: 0.818 0.982
  `expected`: 0.770 0.980
  ── Failure ('test1-CimpleG-nnet.R:18:3'): signatures are generated w/ nnet ─────
  `res` (`actual`) not equal to c(0.9176471, 0.9882353) (`expected`).
  
    `actual`: 0.9118 0.9882
  `expected`: 0.9176 0.9882
  ── Failure ('test1-CimpleG-rf.R:18:3'): signatures are generated w/ rand_forest ──
  `res` (`actual`) not equal to c(0.8176471, 0.9823529) (`expected`).
  
    `actual`: 0.8176 0.9765
  `expected`: 0.8176 0.9824
  
  [ FAIL 3 | WARN 0 | SKIP 1 | PASS 63 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... [13s] OK
* checking HTML version of manual ... OK
* DONE
Status: 1 ERROR, 3 NOTEs