installing dependencies ‘baseline’, ‘chemometrics’, ‘ChemoSpecUtils’, ‘clusterCrit’, ‘hyperSpec’, ‘js’, ‘readJDX’, ‘roxut’, ‘speaq’ also installing the dependency ‘MassSpecWavelet’ begin installing package ‘MassSpecWavelet’ begin installing package ‘ChemoSpecUtils’ begin installing package ‘readJDX’ begin installing package ‘js’ begin installing package ‘clusterCrit’ begin installing package ‘baseline’ begin installing package ‘chemometrics’ begin installing package ‘roxut’ begin installing package ‘hyperSpec’ * installing *source* package ‘js’ ... ** this is package ‘js’ version ‘1.2.1’ ** package ‘js’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (js) * installing *source* package ‘roxut’ ... ** this is package ‘roxut’ version ‘0.4.0’ ** package ‘roxut’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (roxut) * installing *source* package ‘MassSpecWavelet’ ... ** this is package ‘MassSpecWavelet’ version ‘1.74.0’ ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpMWzWtj/R.INSTALL3d742552c53e5b/MassSpecWavelet/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c find_local_maximum.c -o find_local_maximum.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o MassSpecWavelet.so find_local_maximum.o init.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpMWzWtj/R.INSTALL3d742552c53e5b/MassSpecWavelet/src' installing to /home/hornik/tmp/CRAN_special_noSuggests/Library/00LOCK-MassSpecWavelet/00new/MassSpecWavelet/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MassSpecWavelet) begin installing package ‘speaq’ * installing *source* package ‘readJDX’ ... ** this is package ‘readJDX’ version ‘0.6.4’ ** package ‘readJDX’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (readJDX) * installing *source* package ‘chemometrics’ ... ** this is package ‘chemometrics’ version ‘1.4.4’ ** package ‘chemometrics’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (chemometrics) * installing *source* package ‘clusterCrit’ ... ** this is package ‘clusterCrit’ version ‘1.3.0’ ** package ‘clusterCrit’ successfully unpacked and MD5 sums checked ** using staged installation checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc-14 -std=gnu23 accepts -g... yes checking for gcc-14 -std=gnu23 option to accept ISO C89... none needed checking whether we are using the GNU Fortran compiler... yes checking whether gfortran-14 accepts -g... yes configure: creating ./config.status config.status: creating src/Makevars ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp0ohFUK/R.INSTALL3d7427266fe6c8/clusterCrit/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c criteria.c -o criteria.o criteria.c: In function ‘cluc_errorMsg’: criteria.c:331:17: warning: unused variable ‘msg’ [-Wunused-variable] 331 | char msg[128]; | ^~~ gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c norms.f95 -o norms.o gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c matrix.f95 -o matrix.o gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c critUtils.f95 -o critUtils.o critUtils.f95:847:26: 847 | sConc(1) = sConc(1) + ip - 1 | 1 Warning: Possible change of value in conversion from INTEGER(4) to INTEGER(1) at (1) [-Wconversion] critUtils.f95:851:29: 851 | sConc(2) = sConc(2) + (sPNum(1) - iw + 1) | 1 Warning: Possible change of value in conversion from INTEGER(4) to INTEGER(1) at (1) [-Wconversion] critUtils.f95:855:29: 855 | sConc(1) = sConc(1) + 1 | 1 Warning: Possible change of value in conversion from INTEGER(4) to INTEGER(1) at (1) [-Wconversion] gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c indices.f95 -o indices.o gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c critCalc.f95 -o critCalc.o gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o clusterCrit.so criteria.o norms.o matrix.o critUtils.o indices.o critCalc.o -llapack -L/home/hornik/tmp/R-d-gcc-14/lib -lRblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp0ohFUK/R.INSTALL3d7427266fe6c8/clusterCrit/src' installing to /home/hornik/tmp/CRAN_special_noSuggests/Library/00LOCK-clusterCrit/00new/clusterCrit/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (clusterCrit) * installing *source* package ‘baseline’ ... ** this is package ‘baseline’ version ‘1.3-6’ ** package ‘baseline’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpcG48G8/R.INSTALL3d742f4e09fece/baseline/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c baselineMethods.c -o baselineMethods.o gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c s2band.f -o s2band.o gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o baseline.so baselineMethods.o s2band.o -L/home/hornik/tmp/R-d-gcc-14/lib -lRblas -llapack -lgfortran -lquadmath -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpcG48G8/R.INSTALL3d742f4e09fece/baseline/src' installing to /home/hornik/tmp/CRAN_special_noSuggests/Library/00LOCK-baseline/00new/baseline/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘getCall’ in package ‘baseline’ ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (baseline) * installing *source* package ‘ChemoSpecUtils’ ... ** this is package ‘ChemoSpecUtils’ version ‘1.0.5’ ** package ‘ChemoSpecUtils’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ChemoSpecUtils) * installing *source* package ‘speaq’ ... ** this is package ‘speaq’ version ‘2.7.0’ ** package ‘speaq’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (speaq) * installing *source* package ‘hyperSpec’ ... ** this is package ‘hyperSpec’ version ‘0.100.2’ ** package ‘hyperSpec’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for ‘apply’ from package ‘base’ in package ‘hyperSpec’ Creating a generic function for ‘cov’ from package ‘stats’ in package ‘hyperSpec’ Creating a generic function for ‘ncol’ from package ‘base’ in package ‘hyperSpec’ Creating a generic function for ‘nrow’ from package ‘base’ in package ‘hyperSpec’ Creating a generic function for ‘rownames’ from package ‘base’ in package ‘hyperSpec’ Creating a generic function for ‘rownames<-’ from package ‘base’ in package ‘hyperSpec’ Creating a generic function for ‘colnames’ from package ‘base’ in package ‘hyperSpec’ Creating a generic function for ‘colnames<-’ from package ‘base’ in package ‘hyperSpec’ Creating a generic function for ‘sample’ from package ‘base’ in package ‘hyperSpec’ Creating a generic function for ‘sweep’ from package ‘base’ in package ‘hyperSpec’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (hyperSpec) checking ChemoSpec_6.1.12.tar.gz ... Depends: Package: ChemoSpec Depends: R (>= 3.5), ChemoSpecUtils (>= 1.0) Imports: stats, utils, grDevices, reshape2, readJDX (>= 0.6), patchwork, ggplot2, plotly, magrittr Timings: user system elapsed ChemoSpec 55.902 5.968 63.86 Results: Check status summary: NOTE Source packages 1 Check results summary: ChemoSpec ... NOTE * checking re-building of vignette outputs ... [0s/0s] NOTE