test_that("performParallelNLMERun works with multiple IDs", { skip_on_cran() action <- "performParallelNLMERun" resultsPattern <- c( "EtaEta", "EtaCov", "EtaCovariate", "EtaCovariateCat", "StrCovariate", "StrCovariateCat", "nonParEtaResult" ) INSTALLDIR <- Sys.getenv("INSTALLDIR") if (INSTALLDIR == "") { # the variable is not set stop("cannot start the test, INSTALLDIR variable is not specified.") } NLME_ROOT_DIRECTORY <- file.path(tempdir(TRUE), paste(action, "multipleIDs")) dir.create(NLME_ROOT_DIRECTORY) Sys.setenv("NLME_ROOT_DIRECTORY" = NLME_ROOT_DIRECTORY) DataLocation <- system.file(file.path("extdata", action, "multipleIds"), package = "Certara.NLME8", mustWork = TRUE ) DataFiles <- list.files(DataLocation, pattern = "*") file.copy(file.path(DataLocation, DataFiles), NLME_ROOT_DIRECTORY, overwrite = TRUE ) args <- list( args = c( "GENERIC", "none", INSTALLDIR, NLME_ROOT_DIRECTORY, NLME_ROOT_DIRECTORY, "jobControlFile.txt", 1, "multipleIDs", "c(\"tvKa\", \"tvV\", \"tvCl\")" ), reportProgress = TRUE ) do.call(action, args) for (epxectedFile in resultsPattern) { result <- read.csv(file.path( NLME_ROOT_DIRECTORY, paste0(epxectedFile, ".csv") )) expectedResult <- read.csv(file.path( NLME_ROOT_DIRECTORY, paste0(epxectedFile, ".expected") )) testthat::expect_equal(result, expectedResult) } })