2025-03-10 17:43:51 [Main thread] INFO CdmOnboarding .execute Running CdmOnboarding v3.3.4 2025-03-10 17:43:52 [Main thread] INFO CdmOnboarding .getCdmSource > CDM Source table successfully extracted 2025-03-10 17:43:52 [Main thread] INFO CdmOnboarding .execute Found database 'Synpuf' with CDM release date '2018-03-15' 2025-03-10 17:43:52 [Main thread] INFO CdmOnboarding .getAchillesMetadata > Achilles metadata successfully extracted 2025-03-10 17:43:52 [Main thread] INFO CdmOnboarding .processDqdResults Reading DataQualityDashboard results 2025-03-10 17:43:52 [Main thread] INFO CdmOnboarding .processDqdResults > Successfully extracted DQD results overview from 'dqd_synpuf-1k.json' 2025-03-10 17:43:52 [Main thread] INFO CdmOnboarding .execute > CDM Onboarding of database Synpuf started (cdm_version=v5.3) 2025-03-10 17:43:52 [Main thread] INFO CdmOnboarding .execute > Done. 2025-03-10 17:43:52 [Main thread] INFO CdmOnboarding .execute > Complete CdmOnboarding took 0.01 minutes 2025-03-10 17:43:52 [Main thread] INFO CdmOnboarding .execute > The CDM Onboarding results have been exported to . 2025-03-10 17:43:52 [Main thread] INFO CdmOnboarding generateResultsDocument > Saving doc to ./CdmOnboarding_synpuf-1k_20250310.docx 2025-03-10 17:43:52 [Main thread] INFO CdmOnboarding cdmOnboarding > All generated CDM Onboarding results are bundled for sharing at: ./Results_Onboarding_synpuf-1k_20250310.zip 2025-03-10 17:43:52 [Main thread] INFO CdmOnboarding .execute Running CdmOnboarding v3.3.4 2025-03-10 17:43:52 [Main thread] INFO CdmOnboarding .getCdmSource > CDM Source table successfully extracted 2025-03-10 17:43:52 [Main thread] INFO CdmOnboarding .execute Found database 'Synpuf' with CDM release date '2018-03-15' 2025-03-10 17:43:53 [Main thread] INFO CdmOnboarding .getAchillesMetadata > Achilles metadata successfully extracted 2025-03-10 17:43:53 [Main thread] WARN CdmOnboarding .execute No dqdJsonPath specfied, data quality section will be empty. 2025-03-10 17:43:53 [Main thread] INFO CdmOnboarding .execute > CDM Onboarding of database Synpuf started (cdm_version=v5.3) 2025-03-10 17:43:53 [Main thread] INFO CdmOnboarding .execute > Done. 2025-03-10 17:43:53 [Main thread] INFO CdmOnboarding .execute > Complete CdmOnboarding took 0.01 minutes 2025-03-10 17:43:53 [Main thread] INFO CdmOnboarding .execute > The CDM Onboarding results have been exported to . 2025-03-10 17:43:53 [Main thread] INFO CdmOnboarding generateResultsDocument > Saving doc to ./CdmOnboarding_synpuf-1k_20250310.docx 2025-03-10 17:43:53 [Main thread] INFO CdmOnboarding cdmOnboarding > All generated CDM Onboarding results are bundled for sharing at: ./Results_Onboarding_synpuf-1k_20250310.zip 2025-03-10 17:43:53 [Main thread] INFO CdmOnboarding executeQuery > Retrieving duration of Achilles queries in 0.07 secs 2025-03-10 17:43:54 [Main thread] INFO CdmOnboarding executeQuery > Executing vocabulary query benchmark in 0.60 secs 2025-03-10 17:43:55 [Main thread] INFO CdmOnboarding .runBenchmarkCdmConnector Starting execution of CDMConnector Benchmark 2025-03-10 17:44:10 [Main thread] WARN CdmOnboarding performanceChecks The applied indexes query cannot be run for 'duckdb', it is only implemented for PostgreSQL and MS Sql Server. 2025-03-10 17:44:12 [Main thread] INFO CdmOnboarding performanceChecks Running Performance Checks on AMD EPYC 7443 24-Core Processor cpu with 96 cores, and 274.73 GB ram. 2025-03-10 17:44:12 [Main thread] INFO CdmOnboarding performanceChecks > DBMS version found: "v1.2.0" 2025-03-10 17:44:12 [Main thread] INFO CdmOnboarding executeQuery > Count on vocabulary tables query executed successfully in 0.06 secs 2025-03-10 17:44:12 [Main thread] INFO CdmOnboarding executeQuery > Concept counts by vocabulary query executed successfully in 0.18 secs 2025-03-10 17:44:12 [Main thread] INFO CdmOnboarding executeQuery > Source to concept map breakdown query executed successfully in 0.06 secs 2025-03-10 17:44:12 [Main thread] INFO CdmOnboarding executeQuery > Source to concept map query executed successfully in 0.06 secs 2025-03-10 17:44:12 [Main thread] INFO CdmOnboarding vocabularyChecks Starting vocab mapping queries. Preprocessing domains... 2025-03-10 17:44:13 [Main thread] INFO CdmOnboarding executeQuery > Mapping Temp tables query executed successfully in 0.16 secs 2025-03-10 17:44:13 [Main thread] INFO CdmOnboarding executeQuery > Mapping Completeness query executed successfully in 0.02 secs 2025-03-10 17:44:13 [Main thread] INFO CdmOnboarding executeQuery > Drug Level Mapping query executed successfully in 0.06 secs 2025-03-10 17:44:13 [Main thread] INFO CdmOnboarding executeQuery > Unmapped drugs query executed successfully in 0.01 secs 2025-03-10 17:44:13 [Main thread] INFO CdmOnboarding executeQuery > Unmapped conditions query executed successfully in 0.01 secs 2025-03-10 17:44:13 [Main thread] INFO CdmOnboarding executeQuery > Unmapped measurements query executed successfully in 0.01 secs 2025-03-10 17:44:13 [Main thread] INFO CdmOnboarding executeQuery > Unmapped observations query executed successfully in 0.00 secs 2025-03-10 17:44:13 [Main thread] INFO CdmOnboarding executeQuery > Unmapped procedures query executed successfully in 0.00 secs 2025-03-10 17:44:13 [Main thread] INFO CdmOnboarding executeQuery > Unmapped devices query executed successfully in 0.00 secs 2025-03-10 17:44:13 [Main thread] INFO CdmOnboarding executeQuery > Unmapped visits query executed successfully in 0.00 secs 2025-03-10 17:44:13 [Main thread] INFO CdmOnboarding executeQuery > Unmapped visit details query executed successfully in 0.00 secs 2025-03-10 17:44:13 [Main thread] INFO CdmOnboarding executeQuery > Unmapped meas units query executed successfully in 0.01 secs 2025-03-10 17:44:13 [Main thread] INFO CdmOnboarding executeQuery > Unmapped obs units query executed successfully in 0.01 secs 2025-03-10 17:44:13 [Main thread] INFO CdmOnboarding executeQuery > Unmapped meas values query executed successfully in 0.01 secs 2025-03-10 17:44:13 [Main thread] INFO CdmOnboarding executeQuery > Unmapped obs values query executed successfully in 0.01 secs 2025-03-10 17:44:13 [Main thread] INFO CdmOnboarding executeQuery > Unmapped drug route query executed successfully in 0.01 secs 2025-03-10 17:44:13 [Main thread] INFO CdmOnboarding executeQuery > Unmapped specialty query executed successfully in 0.00 secs 2025-03-10 17:44:13 [Main thread] INFO CdmOnboarding executeQuery > Mapped drugs query executed successfully in 0.09 secs 2025-03-10 17:44:13 [Main thread] INFO CdmOnboarding executeQuery > Mapped conditions query executed successfully in 0.12 secs 2025-03-10 17:44:13 [Main thread] INFO CdmOnboarding executeQuery > Mapped measurements query executed successfully in 0.05 secs 2025-03-10 17:44:13 [Main thread] INFO CdmOnboarding executeQuery > Mapped observations query executed successfully in 0.07 secs 2025-03-10 17:44:13 [Main thread] INFO CdmOnboarding executeQuery > Mapped procedures query executed successfully in 0.04 secs 2025-03-10 17:44:13 [Main thread] INFO CdmOnboarding executeQuery > Mapped devices query executed successfully in 0.02 secs 2025-03-10 17:44:14 [Main thread] INFO CdmOnboarding executeQuery > Mapped visits query executed successfully in 0.02 secs 2025-03-10 17:44:14 [Main thread] INFO CdmOnboarding executeQuery > Mapped visit details query executed successfully in 0.01 secs 2025-03-10 17:44:14 [Main thread] INFO CdmOnboarding executeQuery > Mapped meas units query executed successfully in 0.02 secs 2025-03-10 17:44:14 [Main thread] INFO CdmOnboarding executeQuery > Mapped obs units query executed successfully in 0.02 secs 2025-03-10 17:44:14 [Main thread] INFO CdmOnboarding executeQuery > Mapped meas values query executed successfully in 0.02 secs 2025-03-10 17:44:14 [Main thread] INFO CdmOnboarding executeQuery > Mapped obs values query executed successfully in 0.02 secs 2025-03-10 17:44:14 [Main thread] INFO CdmOnboarding executeQuery > Mapped drug routes query executed successfully in 0.01 secs 2025-03-10 17:44:14 [Main thread] INFO CdmOnboarding executeQuery > Mapped specialty query executed successfully in 0.01 secs