* using log directory ‘/srv/hornik/tmp/CRAN_pretest/CausalQueries.Rcheck’
* using R Under development (unstable) (2024-11-03 r87286)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 19.1.1 (1)
    Debian flang-new version 19.1.1 (1)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘CausalQueries/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘CausalQueries’ version ‘1.2.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [5s/8s] OK
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘CausalQueries’ can be installed ... [83s/82s] WARNING
Found the following significant warnings:
  Warning: CausalQueries.Rd:3: docType ‘_PACKAGE’ is unrecognized
See ‘/srv/hornik/tmp/CRAN_pretest/CausalQueries.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Debian clang version 19.1.2 (2)’
* checking C++ specification ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [2s/2s] OK
* checking whether the package can be loaded with stated dependencies ... [2s/2s] OK
* checking whether the package can be unloaded cleanly ... [2s/2s] OK
* checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK
* checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
* checking loading without being on the library search path ... [4s/4s] OK
* checking whether startup messages can be suppressed ... [2s/2s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... WARNING
print:
  function(x, ...)
print.summary.model_query:
  function(object)

summary:
  function(object, ...)
summary.model_query:
  function(object)
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [15s/13s] OK
* checking Rd files ... [0s/0s] WARNING
prepare_Rd: CausalQueries.Rd:3: docType ‘_PACKAGE’ is unrecognized
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in shell scripts ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [4s/4s] ERROR
Running examples in ‘CausalQueries-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: data_helpers
> ### Title: Data helpers
> ### Aliases: data_helpers collapse_data expand_data make_data make_events
> 
> ### ** Examples
> 
> 
> 
> 
> # Simple draws
> model <- make_model("X -> M -> Y")
> make_data(model)
  X M Y
1 1 1 0
> make_data(model, n = 3, nodes = c("X","Y"))
  X  M Y
1 0 NA 0
2 1 NA 0
3 1 NA 1
> make_data(model, n = 3, param_type = "prior_draw")
  X M Y
1 0 0 0
2 0 1 1
3 1 0 1
> make_data(model, n = 10, param_type = "define", parameters =  0:9)
   X M Y
1  1 0 0
2  1 0 1
3  1 0 1
4  1 1 0
5  1 1 0
6  1 1 0
7  1 1 0
8  1 1 1
9  1 1 1
10 1 1 1
> 
> # Data Strategies
> # A strategy in which X, Y are observed for sure and M is observed
> # with 50% probability for X=1, Y=0 cases
> 
> model <- make_model("X -> M -> Y")
> make_data(
+   model,
+   n = 8,
+   nodes = list(c("X", "Y"), "M"),
+   probs = list(1, .5),
+   subsets = list(TRUE, "X==1 & Y==0"))
  X  M Y
1 0 NA 0
2 0 NA 0
3 0 NA 1
4 0 NA 1
5 1 NA 0
6 1  0 0
7 1 NA 1
8 1 NA 1
> 
> # n not provided but inferred from largest n_step (not from sum of n_steps)
> make_data(
+   model,
+   nodes = list(c("X", "Y"), "M"),
+   n_steps = list(5, 2))
Error in make_data(model, nodes = list(c("X", "Y"), "M"), n_steps = list(5,  : 
  n_step larger than n
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [6s/6s] OK
  Running ‘testthat.R’ [6s/6s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [55s/55s] OK
* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [1s/1s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR, 3 WARNINGs