* using log directory ‘/srv/hornik/tmp/CRAN/CRTspat.Rcheck’
* using R Under development (unstable) (2023-10-05 r85268)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 16.0.6 (15)
    GNU Fortran (Debian 13.2.0-4) 13.2.0
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘CRTspat/DESCRIPTION’ ... OK
* this is package ‘CRTspat’ version ‘1.0.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [4s/4s] NOTE
Maintainer: ‘Thomas Smith <Thomas-A.Smith@unibas.ch>’

New submission

Suggests or Enhances not in mainstream repositories:
  INLA

Found the following (possibly) invalid URLs:
  URL: https://cran.r-project.org/web/packages/TSP/vignettes/TSP.pdf
    From: inst/doc/Usecase1.html
    Status: 200
    Message: OK
    CRAN URL not in canonical form
  URL: https://cran.r-project.org/web/packages/jagsUI/index.html
    From: inst/doc/CRTspat.html
          inst/doc/Usecase5.html
    Status: 200
    Message: OK
    CRAN URL not in canonical form
  URL: https://cran.r-project.org/web/packages/lme4/lme4.pdf
    From: inst/doc/Usecase5.html
    Status: 200
    Message: OK
    CRAN URL not in canonical form
  URL: https://cran.r-project.org/web/packages/spatstat.random/citation.html
    From: man/CRTsp.Rd
          inst/doc/Usecase5.html
    Status: 200
    Message: OK
    CRAN URL not in canonical form
  The canonical URL of the CRAN page for a package is 
    https://CRAN.R-project.org/package=pkgname
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Package suggested but not available for checking: ‘INLA’
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘CRTspat’ can be installed ... [4s/4s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Author field differs from that derived from Authors@R
  Author:    ‘Lea Multerer, Mariah Silkey’
  Authors@R: ‘Thomas Smith [aut, cre, cph] (<https://orcid.org/0000-0002-3650-9381>)’

Maintainer field differs from that derived from Authors@R
  Maintainer: ‘Thomas Smith <Thomas-A.Smith@unibas.ch>’
  Authors@R:  ‘Thomas Smith <thomas-a.smith@unibas.ch>’

* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [8s/8s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [18s/18s] ERROR
Running examples in ‘CRTspat-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: compute_mesh
> ### Title: 'compute_mesh' create objects required for INLA analysis of an
> ###   object of class '"CRTsp"'.
> ### Aliases: compute_mesh
> 
> ### ** Examples
> 
> {
+ # low resolution mesh for test dataset
+ library(Matrix)
+ example <- readdata('exampleCRT.txt')
+ exampleMesh=compute_mesh(example, pixel = 0.5)
+ }
Error in compute_mesh(example, pixel = 0.5) : 
  *** INLA package is not installed ***
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [9s/9s] OK
  Running ‘testthat.R’ [8s/8s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking re-building of vignette outputs ... [7s/7s] OK
* checking PDF version of manual ... [4s/4s] WARNING
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
LaTeX errors found:
! LaTeX Error: There's no line here to end.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              
! LaTeX Error: There's no line here to end.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              
* checking PDF version of manual without index ... ERROR
* checking HTML version of manual ... [1s/1s] OK
* checking for non-standard things in the check directory ... NOTE
Found the following files/directories:
  ‘CRTspat-manual.tex’
* checking for detritus in the temp directory ... OK
* DONE
Status: 2 ERRORs, 1 WARNING, 4 NOTEs