R Under development (unstable) (2024-11-06 r87293 ucrt) -- "Unsuffered Consequences" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(CRMetrics) > > test_check("CRMetrics") Attaching package: 'magrittr' The following objects are masked from 'package:testthat': equals, is_less_than, not Adding list of 4 count matrices. Running preprocessing using pagoda2... 3000 cells, 10000 genes; normalizing ... Using plain model Winsorizing ... log scale ... done. calculating variance fit ... using gam 0 overdispersed genes ... 0 persisting ... done. running PCA using 3000 OD genes . . . . done creating space of type angular done adding data ... done building index ... done querying ... done 3000 cells, 10000 genes; normalizing ... Using plain model Winsorizing ... log scale ... done. calculating variance fit ... using gam 0 overdispersed genes ... 0 persisting ... done. running PCA using 3000 OD genes . . . . done creating space of type angular done adding data ... done building index ... done querying ... done 3000 cells, 10000 genes; normalizing ... Using plain model Winsorizing ... log scale ... done. calculating variance fit ... using gam 0 overdispersed genes ... 0 persisting ... done. running PCA using 3000 OD genes . . . . done creating space of type angular done adding data ... done building index ... done querying ... done 3000 cells, 10000 genes; normalizing ... Using plain model Winsorizing ... log scale ... done. calculating variance fit ... using gam 0 overdispersed genes ... 0 persisting ... done. running PCA using 3000 OD genes . . . . done creating space of type angular done adding data ... done building index ... done querying ... done Preprocessing done! Creating Conos object... Building graph... found 0 out of 6 cached PCA space pairs ... running 6 additional PCA space pairs ...... done inter-sample links using mNN ...... done local pairs . . . . done building graph . .done Finding communities... Creating embedding... Estimating embeddings. 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| [ FAIL 0 | WARN 0 | SKIP 0 | PASS 5 ] > > proc.time() user system elapsed 105.31 2.70 108.03