downloading reverse dependencies ... downloading RMFM_1.1.0.tar.gz ... ok installing dependencies ‘COAP’, ‘MixMatrix’ begin installing package ‘MixMatrix’ begin installing package ‘COAP’ * installing *source* package ‘COAP’ ... ** this is package ‘COAP’ version ‘1.3’ ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpGVDslP/R.INSTALL1cbd9f2301e7a5/COAP/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c coap_R1.cpp -o coap_R1.o coap_R1.cpp: In function ‘double calELBO(const arma::mat&, const arma::vec&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::vec&, const arma::mat&, const arma::mat&, const arma::mat&)’: coap_R1.cpp:52:7: warning: unused variable ‘i’ [-Wunused-variable] 52 | int i, n = X_count.n_rows, p = X_count.n_cols, q= B.n_cols; | ^ coap_R1.cpp:53:34: warning: unused variable ‘logS’ [-Wunused-variable] 53 | double pois_term1, pois_term2, logS, entropy=0.0, ELBO=0.0; | ^~~~ coap_R1.cpp: In function ‘arma::mat update_bbeta_sep(const arma::mat&, const arma::mat&, const arma::vec&, const int&, const bool&)’: coap_R1.cpp:74:7: warning: unused variable ‘n’ [-Wunused-variable] 74 | int n = Y.n_rows, d = Z.n_cols; | ^ coap_R1.cpp: In function ‘arma::mat update_bbeta_joint(const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const int&, const bool&)’: coap_R1.cpp:104:7: warning: unused variable ‘n’ [-Wunused-variable] 104 | int n = Y.n_rows, d = Z.n_cols; | ^ coap_R1.cpp: In function ‘void VB_Estep(const arma::mat&, const arma::vec&, const arma::mat&, arma::mat&, arma::mat&, const arma::vec&, const arma::mat&, const arma::mat&, arma::mat&)’: coap_R1.cpp:140:7: warning: unused variable ‘i’ [-Wunused-variable] 140 | int i, j, n = X_count.n_rows, p = X_count.n_cols, q= B.n_cols; | ^ coap_R1.cpp:140:10: warning: unused variable ‘j’ [-Wunused-variable] 140 | int i, j, n = X_count.n_rows, p = X_count.n_cols, q= B.n_cols; | ^ coap_R1.cpp:140:53: warning: unused variable ‘q’ [-Wunused-variable] 140 | int i, j, n = X_count.n_rows, p = X_count.n_cols, q= B.n_cols; | ^ coap_R1.cpp: In function ‘Rcpp::List Reduced_Rank_COAP(const arma::mat&, const arma::vec&, const arma::mat&, const int&, const arma::mat&, const arma::mat&, const arma::vec&, const arma::mat&, const arma::mat&, const arma::mat&, const double&, const int&, const bool&, const bool&, const bool&)’: coap_R1.cpp:190:7: warning: unused variable ‘i’ [-Wunused-variable] 190 | int i, n = X_count.n_rows, p = X_count.n_cols, q= B_int.n_cols; | ^ coap_R1.cpp:190:30: warning: unused variable ‘p’ [-Wunused-variable] 190 | int i, n = X_count.n_rows, p = X_count.n_cols, q= B_int.n_cols; | ^ g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o COAP.so RcppExports.o coap_R1.o -fopenmp -llapack -L/home/hornik/tmp/R-d-gcc-14/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpGVDslP/R.INSTALL1cbd9f2301e7a5/COAP/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-COAP/00new/COAP/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (COAP) * installing *source* package ‘MixMatrix’ ... ** this is package ‘MixMatrix’ version ‘0.2.8’ ** package ‘MixMatrix’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpfnE8Sf/R.INSTALL1cbda11711a412/MixMatrix/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c posdefsqrt.cpp -o posdefsqrt.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c stats.cpp -o stats.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c utils.cpp -o utils.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o MixMatrix.so RcppExports.o posdefsqrt.o stats.o utils.o -fopenmp -llapack -L/home/hornik/tmp/R-d-gcc-14/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpfnE8Sf/R.INSTALL1cbda11711a412/MixMatrix/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-MixMatrix/00new/MixMatrix/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MixMatrix) checking COAP_1.3.tar.gz ... checking RMFM_1.1.0.tar.gz ... Depends: Package: COAP Depends: irlba, R (>= 3.5.0) Imports: MASS, stats, Rcpp (>= 1.0.10) LinkingTo: Rcpp, RcppArmadillo Timings: user system elapsed COAP 53.415 5.746 58.139 Results: Check status summary: NOTE OK Source packages 1 0 Reverse depends 0 1 Check results summary: COAP ... NOTE * checking examples ... [4s/2s] NOTE rdepends_RMFM ... OK