downloading reverse dependencies ‘CohortCharacteristics’, ‘CohortSurvival’, ‘CohortSymmetry’, ‘DrugExposureDiagnostics’, ‘IncidencePrevalence’, ‘MeasurementDiagnostics’, ‘TestGenerator’, ‘CodelistGenerator’, ‘CohortConstructor’, ‘DrugUtilisation’, ‘omock’, ‘OmopConstructor’, ‘omopgenerics’, ‘OmopOnSpark’, ‘OmopSketch’, ‘OmopViewer’, ‘PatientProfiles’, ‘PhenotypeR’, ‘TreatmentPatterns’ trying URL 'file:///data/Repositories/CRAN/src/contrib/CohortCharacteristics_1.1.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/CohortSurvival_1.1.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/CohortSymmetry_0.2.4.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/DrugExposureDiagnostics_1.1.5.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/IncidencePrevalence_1.2.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/MeasurementDiagnostics_0.2.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/TestGenerator_0.4.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/CodelistGenerator_4.0.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/CohortConstructor_0.6.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/DrugUtilisation_1.0.5.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/omock_0.6.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/OmopConstructor_0.1.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/omopgenerics_1.3.5.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/OmopOnSpark_0.1.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/OmopSketch_1.0.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/OmopViewer_0.6.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/PatientProfiles_1.4.4.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/PhenotypeR_0.2.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/TreatmentPatterns_3.1.1.tar.gz' installing dependencies ‘CDMConnector’, ‘CirceR’, ‘CohortCharacteristics’, ‘CohortConstructor’, ‘CohortGenerator’, ‘CohortSurvival’, ‘DrugUtilisation’, ‘Eunomia’, ‘IncidencePrevalence’, ‘MeasurementDiagnostics’, ‘OmopSketch’, ‘OmopViewer’, ‘PaRe’, ‘reactablefmtr’, ‘ResultModelManager’, ‘shiny.fluent’, ‘shinyTree’, ‘sunburstR’ also installing the dependencies ‘shiny.react’, ‘d3r’, ‘CommonDataModel’ begin installing package ‘shiny.react’ begin installing package ‘d3r’ begin installing package ‘CommonDataModel’ begin installing package ‘CirceR’ begin installing package ‘CohortConstructor’ begin installing package ‘DrugUtilisation’ begin installing package ‘OmopViewer’ begin installing package ‘shinyTree’ begin installing package ‘reactablefmtr’ begin installing package ‘ResultModelManager’ begin installing package ‘PaRe’ begin installing package ‘CDMConnector’ * installing *source* package ‘shiny.react’ ... ** this is package ‘shiny.react’ version ‘0.4.0’ ** package ‘shiny.react’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (shiny.react) begin installing package ‘shiny.fluent’ * installing *source* package ‘d3r’ ... ** this is package ‘d3r’ version ‘1.1.0’ ** package ‘d3r’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (d3r) begin installing package ‘sunburstR’ * installing *source* package ‘CirceR’ ... ** this is package ‘CirceR’ version ‘1.3.3’ ** package ‘CirceR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CirceR) * installing *source* package ‘shinyTree’ ... ** this is package ‘shinyTree’ version ‘0.3.1’ ** package ‘shinyTree’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (shinyTree) * installing *source* package ‘sunburstR’ ... ** this is package ‘sunburstR’ version ‘2.1.8’ ** package ‘sunburstR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sunburstR) * installing *source* package ‘OmopViewer’ ... ** this is package ‘OmopViewer’ version ‘0.6.0’ ** package ‘OmopViewer’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (OmopViewer) * installing *source* package ‘shiny.fluent’ ... ** this is package ‘shiny.fluent’ version ‘0.4.0’ ** package ‘shiny.fluent’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (shiny.fluent) * installing *source* package ‘CommonDataModel’ ... ** this is package ‘CommonDataModel’ version ‘1.0.1’ ** package ‘CommonDataModel’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CommonDataModel) begin installing package ‘Eunomia’ * installing *source* package ‘DrugUtilisation’ ... ** this is package ‘DrugUtilisation’ version ‘1.0.5’ ** package ‘DrugUtilisation’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DrugUtilisation) * installing *source* package ‘reactablefmtr’ ... ** this is package ‘reactablefmtr’ version ‘2.0.0’ ** package ‘reactablefmtr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (reactablefmtr) * installing *source* package ‘CDMConnector’ ... ** this is package ‘CDMConnector’ version ‘2.3.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CDMConnector) begin installing package ‘CohortCharacteristics’ begin installing package ‘IncidencePrevalence’ begin installing package ‘CohortSurvival’ * installing *source* package ‘PaRe’ ... ** this is package ‘PaRe’ version ‘0.1.15’ ** package ‘PaRe’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (PaRe) * installing *source* package ‘CohortConstructor’ ... ** this is package ‘CohortConstructor’ version ‘0.6.1’ ** package ‘CohortConstructor’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CohortConstructor) begin installing package ‘OmopSketch’ begin installing package ‘MeasurementDiagnostics’ * installing *source* package ‘ResultModelManager’ ... ** this is package ‘ResultModelManager’ version ‘0.6.2’ ** package ‘ResultModelManager’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading R6Class ConnectionHandler: finalize() method is public, but it should be private as of R6 2.4.0. This code will continue to work, but in a future version of R6, finalize() will be required to be private. ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ResultModelManager) begin installing package ‘CohortGenerator’ * installing *source* package ‘Eunomia’ ... ** this is package ‘Eunomia’ version ‘2.1.0’ ** package ‘Eunomia’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Eunomia) * installing *source* package ‘MeasurementDiagnostics’ ... ** this is package ‘MeasurementDiagnostics’ version ‘0.2.0’ ** package ‘MeasurementDiagnostics’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MeasurementDiagnostics) * installing *source* package ‘CohortSurvival’ ... ** this is package ‘CohortSurvival’ version ‘1.1.0’ ** package ‘CohortSurvival’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CohortSurvival) * installing *source* package ‘CohortCharacteristics’ ... ** this is package ‘CohortCharacteristics’ version ‘1.1.0’ ** package ‘CohortCharacteristics’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CohortCharacteristics) * installing *source* package ‘IncidencePrevalence’ ... ** this is package ‘IncidencePrevalence’ version ‘1.2.1’ ** package ‘IncidencePrevalence’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (IncidencePrevalence) * installing *source* package ‘OmopSketch’ ... ** this is package ‘OmopSketch’ version ‘1.0.0’ ** package ‘OmopSketch’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (OmopSketch) * installing *source* package ‘CohortGenerator’ ... ** this is package ‘CohortGenerator’ version ‘1.0.1’ ** package ‘CohortGenerator’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CohortGenerator) checking CDMConnector_2.3.0.tar.gz ... checking CohortCharacteristics_1.1.0.tar.gz ... checking CohortSurvival_1.1.0.tar.gz ... checking CohortSymmetry_0.2.4.tar.gz ... checking DrugExposureDiagnostics_1.1.5.tar.gz ... checking IncidencePrevalence_1.2.1.tar.gz ... checking MeasurementDiagnostics_0.2.0.tar.gz ... checking TestGenerator_0.4.0.tar.gz ... checking CodelistGenerator_4.0.1.tar.gz ... checking CohortConstructor_0.6.1.tar.gz ... checking DrugUtilisation_1.0.5.tar.gz ... checking omock_0.6.0.tar.gz ... checking OmopConstructor_0.1.0.tar.gz ... checking omopgenerics_1.3.5.tar.gz ... checking OmopOnSpark_0.1.0.tar.gz ... checking OmopSketch_1.0.0.tar.gz ... checking OmopViewer_0.6.0.tar.gz ... checking PatientProfiles_1.4.4.tar.gz ... checking PhenotypeR_0.2.0.tar.gz ... checking TreatmentPatterns_3.1.1.tar.gz ... Depends: Package: CDMConnector Depends: R (>= 4.1.0) Imports: dplyr, dbplyr (>= 2.5.0), DBI (>= 0.3.0), checkmate, cli, purrr, rlang, tidyselect, glue, methods, withr, lifecycle, stringr, stringi, generics, tidyr, jsonlite, readr, omopgenerics (>= 1.2.0) Timings: user system elapsed CDMConnector 206.122 12.314 291.672 Results: Check status summary: ERROR OK Source packages 0 1 Reverse depends 1 18 Check results summary: CDMConnector ... OK rdepends_CodelistGenerator ... OK rdepends_CohortCharacteristics ... OK rdepends_CohortConstructor ... OK rdepends_CohortSurvival ... OK rdepends_CohortSymmetry ... OK rdepends_DrugExposureDiagnostics ... OK rdepends_DrugUtilisation ... OK rdepends_IncidencePrevalence ... OK rdepends_MeasurementDiagnostics ... OK rdepends_omock ... OK rdepends_OmopConstructor ... OK rdepends_omopgenerics ... OK rdepends_OmopOnSpark ... OK rdepends_OmopSketch ... OK rdepends_OmopViewer ... OK rdepends_PatientProfiles ... OK rdepends_PhenotypeR ... ERROR * checking dependencies in R code ... WARNING * checking tests ... [18s/18s] ERROR * checking re-building of vignette outputs ... [324s/249s] ERROR rdepends_TestGenerator ... OK rdepends_TreatmentPatterns ... OK