R Under development (unstable) (2026-01-08 r89292 ucrt) -- "Unsuffered Consequences"
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> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
> 
> library(testthat)
> library(CDMConnector)
> 
> test_check("CDMConnector")
trying URL 'https://cdmconnectordata.blob.core.windows.net/cdmconnector-example-data/GiBleed_5.3.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB


Download completed!
[1] "CI tests not run on spark/databricks - DATABRICKS_HTTPPATH not found"
Creating CDM database D:\temp\2026_01_09_16_25_17_27016\Rtmp6pVeVA\file179e846204648/GiBleed_5.3.zip
Connecting using DuckDB driver
i Generating 2 cohorts
i Generating cohort (1/2) - cerebral_venous_sinus_thrombosis_01
v Generating cohort (1/2) - cerebral_venous_sinus_thrombosis_01 [376ms]

i Generating cohort (2/2) - deep_vein_thrombosis_01
v Generating cohort (2/2) - deep_vein_thrombosis_01 [265ms]

i Generating 1 cohort
i Generating cohort (1/1) - deep_vein_thrombosis_01
v Generating cohort (1/1) - deep_vein_thrombosis_01 [283ms]

i Generating 1 cohort
i Generating cohort (1/1) - deep_vein_thrombosis_01
v Generating cohort (1/1) - deep_vein_thrombosis_01 [231ms]

i Generating 1 cohort
i Generating cohort (1/1) - viral_sinusitus
v Generating cohort (1/1) - viral_sinusitus [735ms]

=================>-------------   58% | ETA:  2s
Getting distinct count of concept relationship table
Getting count of different relationship IDs in concept relationship table
Getting join of concept and concept class computed to a temp table
Getting concept table collected into memory
Getting join of person and observation period collected into memory
Getting summary of observation period start and end dates by gender concept id
i Generating 3 cohorts
i Generating cohort (1/3) - gibleed_male
v Generating cohort (1/3) - gibleed_male [617ms]

i Generating cohort (2/3) - cerebral_venous_sinus_thrombosis_01
v Generating cohort (2/3) - cerebral_venous_sinus_thrombosis_01 [246ms]

i Generating cohort (3/3) - deep_vein_thrombosis_01
v Generating cohort (3/3) - deep_vein_thrombosis_01 [234ms]

i Generating 3 cohorts
i Generating cohort (1/3) - gibleed_male
v Generating cohort (1/3) - gibleed_male [624ms]

i Generating cohort (2/3) - cerebral_venous_sinus_thrombosis_01
v Generating cohort (2/3) - cerebral_venous_sinus_thrombosis_01 [229ms]

i Generating cohort (3/3) - deep_vein_thrombosis_01
v Generating cohort (3/3) - deep_vein_thrombosis_01 [252ms]

Getting distinct count of concept relationship table
Getting count of different relationship IDs in concept relationship table
Getting join of concept and concept class computed to a temp table
Getting concept table collected into memory
Getting join of person and observation period collected into memory
Getting summary of observation period start and end dates by gender concept id
[ FAIL 0 | WARN 0 | SKIP 44 | PASS 75 ]

══ Skipped tests (44) ══════════════════════════════════════════════════════════
• "duckdb" %in% dbToTest is not TRUE (10):
  'test-03-db-generateCohortSet.R:184:3',
  'test-03-db-generateCohortSet.R:280:3',
  'test-04-db-generateConceptCohortSet.R:571:3', 'test-Eunomia.R:82:5',
  'test-deprecations.R:3:3', 'test-omopgenerics.R:4:3', 'test-pool.R:4:3',
  'test-writePrefixDropUseCase.R:3:3', 'test-writePrefixDropUseCase.R:45:3',
  'test-write_prefix.r:3:3'
• "postgres" %in% dbToTest is not TRUE (1): 'test-02-db-cdm.R:299:3'
• On CRAN (9): 'test-04-db-generateConceptCohortSet.R:399:3',
  'test-04-db-generateConceptCohortSet.R:417:3',
  'test-04-db-generateConceptCohortSet.R:443:3',
  'test-04-db-generateConceptCohortSet.R:622:3', 'test-07-db-dateadd.R:327:3',
  'test-Eunomia.R:61:3', 'test-db-recordCohortAttrition.R:134:3',
  'test-memory-issue.R:6:3',
  'test-write_prefix_cohort_generation_snowflake.R:4:3'
• empty test (13): , , , , , , , , , , , ,
• eunomiaIsAvailable("empty_cdm") is not TRUE (1): 'test-Eunomia.R:42:3'
• failing test (1): 'test-07-db-dateadd.R:126:3'
• manual test (7): 'test-02-db-cdm.R:240:3',
  'test-03-db-generateCohortSet.R:115:3',
  'test-03-db-generateCohortSet.R:256:3', 'test-09-db-copy_cdm_to.R:62:3',
  'test-Eunomia.R:2:3', 'test-db-in_schema.R:46:3',
  'test-db-write_schema_with_database.R:5:3'
• {Capr} is not installed (1): 'test-04-db-generateConceptCohortSet.R:597:3'
• {TreatmentPatterns} is not installed (1):
  'test-03-db-generateCohortSet.R:134:3'

[ FAIL 0 | WARN 0 | SKIP 44 | PASS 75 ]
> 
> 
> 
> 
> 
> proc.time()
   user  system elapsed 
 126.40    9.65  124.43