downloading reverse dependencies ... downloading CohortCharacteristics_1.0.0.tar.gz ... ok downloading CohortConstructor_0.4.0.tar.gz ... ok downloading CohortSurvival_1.0.2.tar.gz ... ok downloading CohortSymmetry_0.2.4.tar.gz ... ok downloading DrugExposureDiagnostics_1.1.4.tar.gz ... ok downloading DrugUtilisation_1.0.3.tar.gz ... ok downloading IncidencePrevalence_1.2.0.tar.gz ... ok downloading OmopSketch_0.5.1.tar.gz ... ok downloading PatientProfiles_1.4.0.tar.gz ... ok downloading TestGenerator_0.4.0.tar.gz ... ok downloading CodelistGenerator_3.5.0.tar.gz ... ok downloading OmopViewer_0.3.0.tar.gz ... ok downloading PhenotypeR_0.1.6.tar.gz ... ok downloading TreatmentPatterns_3.1.0.tar.gz ... ok installing dependencies ‘bigrquery’, ‘CDMConnector’, ‘CirceR’, ‘CohortCharacteristics’, ‘CohortConstructor’, ‘CohortGenerator’, ‘CohortSurvival’, ‘DrugUtilisation’, ‘Eunomia’, ‘IncidencePrevalence’, ‘omock’, ‘OmopSketch’, ‘OmopViewer’, ‘PaRe’, ‘reactablefmtr’, ‘ResultModelManager’, ‘shinyTree’, ‘sunburstR’ also installing the dependencies ‘d3r’, ‘CommonDataModel’, ‘cyclocomp’ begin installing package ‘d3r’ begin installing package ‘CommonDataModel’ begin installing package ‘cyclocomp’ begin installing package ‘CirceR’ begin installing package ‘bigrquery’ begin installing package ‘omock’ begin installing package ‘OmopViewer’ begin installing package ‘shinyTree’ begin installing package ‘reactablefmtr’ begin installing package ‘ResultModelManager’ begin installing package ‘CDMConnector’ * installing *source* package ‘cyclocomp’ ... ** this is package ‘cyclocomp’ version ‘1.1.1’ ** package ‘cyclocomp’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cyclocomp) begin installing package ‘PaRe’ * installing *source* package ‘d3r’ ... ** this is package ‘d3r’ version ‘1.1.0’ ** package ‘d3r’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (d3r) begin installing package ‘sunburstR’ * installing *source* package ‘CirceR’ ... ** this is package ‘CirceR’ version ‘1.3.3’ ** package ‘CirceR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CirceR) * installing *source* package ‘shinyTree’ ... ** this is package ‘shinyTree’ version ‘0.3.1’ ** package ‘shinyTree’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (shinyTree) * installing *source* package ‘sunburstR’ ... ** this is package ‘sunburstR’ version ‘2.1.8’ ** package ‘sunburstR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sunburstR) * installing *source* package ‘OmopViewer’ ... ** this is package ‘OmopViewer’ version ‘0.3.0’ ** package ‘OmopViewer’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (OmopViewer) * installing *source* package ‘CommonDataModel’ ... ** this is package ‘CommonDataModel’ version ‘1.0.1’ ** package ‘CommonDataModel’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CommonDataModel) begin installing package ‘Eunomia’ * installing *source* package ‘omock’ ... ** this is package ‘omock’ version ‘0.4.0’ ** package ‘omock’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (omock) * installing *source* package ‘reactablefmtr’ ... ** this is package ‘reactablefmtr’ version ‘2.0.0’ ** package ‘reactablefmtr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (reactablefmtr) * installing *source* package ‘CDMConnector’ ... ** this is package ‘CDMConnector’ version ‘2.1.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CDMConnector) begin installing package ‘CohortConstructor’ begin installing package ‘DrugUtilisation’ begin installing package ‘IncidencePrevalence’ begin installing package ‘CohortCharacteristics’ begin installing package ‘CohortSurvival’ * installing *source* package ‘Eunomia’ ... ** this is package ‘Eunomia’ version ‘2.0.0’ ** package ‘Eunomia’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Eunomia) * installing *source* package ‘PaRe’ ... ** this is package ‘PaRe’ version ‘0.1.15’ ** package ‘PaRe’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (PaRe) * installing *source* package ‘ResultModelManager’ ... ** this is package ‘ResultModelManager’ version ‘0.5.11’ ** package ‘ResultModelManager’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading R6Class ConnectionHandler: finalize() method is public, but it should be private as of R6 2.4.0. This code will continue to work, but in a future version of R6, finalize() will be required to be private. R6Class DataMigrationManager: finalize() method is public, but it should be private as of R6 2.4.0. This code will continue to work, but in a future version of R6, finalize() will be required to be private. R6Class QueryNamespace: finalize() method is public, but it should be private as of R6 2.4.0. This code will continue to work, but in a future version of R6, finalize() will be required to be private. ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ResultModelManager) begin installing package ‘CohortGenerator’ * installing *source* package ‘CohortSurvival’ ... ** this is package ‘CohortSurvival’ version ‘1.0.2’ ** package ‘CohortSurvival’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CohortSurvival) * installing *source* package ‘IncidencePrevalence’ ... ** this is package ‘IncidencePrevalence’ version ‘1.2.0’ ** package ‘IncidencePrevalence’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (IncidencePrevalence) * installing *source* package ‘CohortCharacteristics’ ... ** this is package ‘CohortCharacteristics’ version ‘1.0.0’ ** package ‘CohortCharacteristics’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CohortCharacteristics) * installing *source* package ‘DrugUtilisation’ ... ** this is package ‘DrugUtilisation’ version ‘1.0.3’ ** package ‘DrugUtilisation’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DrugUtilisation) * installing *source* package ‘CohortConstructor’ ... ** this is package ‘CohortConstructor’ version ‘0.4.0’ ** package ‘CohortConstructor’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CohortConstructor) begin installing package ‘OmopSketch’ * installing *source* package ‘bigrquery’ ... ** this is package ‘bigrquery’ version ‘1.5.1’ ** package ‘bigrquery’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpCoZ3J1/R.INSTALL3a070a3c0d8807/bigrquery/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cli/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/rapidjsonr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c BqField.cpp -o BqField.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cli/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/rapidjsonr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c base64.c -o base64.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cli/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/rapidjsonr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c cpp11.cpp -o cpp11.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o bigrquery.so BqField.o base64.o cpp11.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpCoZ3J1/R.INSTALL3a070a3c0d8807/bigrquery/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-bigrquery/00new/bigrquery/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bigrquery) * installing *source* package ‘OmopSketch’ ... ** this is package ‘OmopSketch’ version ‘0.5.1’ ** package ‘OmopSketch’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (OmopSketch) * installing *source* package ‘CohortGenerator’ ... ** this is package ‘CohortGenerator’ version ‘0.11.2’ ** package ‘CohortGenerator’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CohortGenerator) checking CDMConnector_2.1.0.tar.gz ... checking CohortCharacteristics_1.0.0.tar.gz ... checking CohortConstructor_0.4.0.tar.gz ... checking CohortSurvival_1.0.2.tar.gz ... checking CohortSymmetry_0.2.4.tar.gz ... checking DrugExposureDiagnostics_1.1.4.tar.gz ... checking DrugUtilisation_1.0.3.tar.gz ... checking IncidencePrevalence_1.2.0.tar.gz ... checking OmopSketch_0.5.1.tar.gz ... checking PatientProfiles_1.4.0.tar.gz ... checking TestGenerator_0.4.0.tar.gz ... checking CodelistGenerator_3.5.0.tar.gz ... checking OmopViewer_0.3.0.tar.gz ... checking PhenotypeR_0.1.6.tar.gz ... checking TreatmentPatterns_3.1.0.tar.gz ... Depends: Package: CDMConnector Depends: R (>= 4.1.0) Imports: dplyr, dbplyr (>= 2.5.0), DBI (>= 0.3.0), checkmate, cli, purrr, rlang, tidyselect, glue, methods, withr, lifecycle, stringr, stringi, generics, tidyr, jsonlite, readr, omopgenerics (>= 1.2.0) Timings: user system elapsed CDMConnector 210.658 15.078 293.382 Results: Check status summary: OK Source packages 1 Reverse depends 14 Check results summary: CDMConnector ... OK rdepends_CodelistGenerator ... OK rdepends_CohortCharacteristics ... OK rdepends_CohortConstructor ... OK rdepends_CohortSurvival ... OK rdepends_CohortSymmetry ... OK rdepends_DrugExposureDiagnostics ... OK rdepends_DrugUtilisation ... OK rdepends_IncidencePrevalence ... OK rdepends_OmopSketch ... OK rdepends_OmopViewer ... OK rdepends_PatientProfiles ... OK rdepends_PhenotypeR ... OK rdepends_TestGenerator ... OK rdepends_TreatmentPatterns ... OK