downloading reverse dependencies ... downloading CohortCharacteristics_0.4.0.tar.gz ... ok downloading CohortConstructor_0.3.5.tar.gz ... ok downloading CohortSurvival_0.6.2.tar.gz ... ok downloading CohortSymmetry_0.2.1.tar.gz ... ok downloading DrugExposureDiagnostics_1.1.1.tar.gz ... ok downloading DrugUtilisation_0.8.2.tar.gz ... ok downloading IncidencePrevalence_1.1.0.tar.gz ... ok downloading OmopSketch_0.2.2.tar.gz ... ok downloading PatientProfiles_1.2.3.tar.gz ... ok downloading TestGenerator_0.3.3.tar.gz ... ok downloading CodelistGenerator_3.4.0.tar.gz ... ok downloading OmopViewer_0.2.0.tar.gz ... ok downloading PhenotypeR_0.1.3.tar.gz ... ok downloading TreatmentPatterns_3.0.0.tar.gz ... ok installing dependencies ‘Andromeda’, ‘bigrquery’, ‘CDMConnector’, ‘CirceR’, ‘CohortCharacteristics’, ‘CohortConstructor’, ‘CohortGenerator’, ‘CohortSurvival’, ‘DrugUtilisation’, ‘Eunomia’, ‘IncidencePrevalence’, ‘omock’, ‘OmopSketch’, ‘PaRe’, ‘reactablefmtr’, ‘ResultModelManager’, ‘sunburstR’ also installing the dependencies ‘tippy’, ‘d3r’, ‘CommonDataModel’, ‘ParallelLogger’ begin installing package ‘d3r’ begin installing package ‘tippy’ begin installing package ‘CommonDataModel’ begin installing package ‘ParallelLogger’ begin installing package ‘CirceR’ begin installing package ‘bigrquery’ begin installing package ‘omock’ begin installing package ‘Andromeda’ begin installing package ‘PaRe’ begin installing package ‘CDMConnector’ * installing *source* package ‘tippy’ ... ** this is package ‘tippy’ version ‘0.1.0’ ** package ‘tippy’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tippy) * installing *source* package ‘d3r’ ... ** this is package ‘d3r’ version ‘1.1.0’ ** package ‘d3r’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (d3r) begin installing package ‘reactablefmtr’ begin installing package ‘sunburstR’ * installing *source* package ‘ParallelLogger’ ... ** this is package ‘ParallelLogger’ version ‘3.3.1’ ** package ‘ParallelLogger’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ParallelLogger) begin installing package ‘ResultModelManager’ * installing *source* package ‘CirceR’ ... ** this is package ‘CirceR’ version ‘1.3.3’ ** package ‘CirceR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CirceR) * installing *source* package ‘omock’ ... ** this is package ‘omock’ version ‘0.3.2’ ** package ‘omock’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (omock) * installing *source* package ‘sunburstR’ ... ** this is package ‘sunburstR’ version ‘2.1.8’ ** package ‘sunburstR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sunburstR) * installing *source* package ‘CommonDataModel’ ... ** this is package ‘CommonDataModel’ version ‘1.0.1’ ** package ‘CommonDataModel’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CommonDataModel) begin installing package ‘Eunomia’ * installing *source* package ‘Andromeda’ ... ** this is package ‘Andromeda’ version ‘0.6.7’ ** package ‘Andromeda’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Andromeda) * installing *source* package ‘CDMConnector’ ... ** this is package ‘CDMConnector’ version ‘2.0.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CDMConnector) begin installing package ‘CohortConstructor’ begin installing package ‘IncidencePrevalence’ begin installing package ‘DrugUtilisation’ begin installing package ‘CohortCharacteristics’ begin installing package ‘CohortSurvival’ * installing *source* package ‘PaRe’ ... ** this is package ‘PaRe’ version ‘0.1.15’ ** package ‘PaRe’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (PaRe) * installing *source* package ‘reactablefmtr’ ... ** this is package ‘reactablefmtr’ version ‘2.0.0’ ** package ‘reactablefmtr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (reactablefmtr) * installing *source* package ‘Eunomia’ ... ** this is package ‘Eunomia’ version ‘2.0.0’ ** package ‘Eunomia’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Eunomia) * installing *source* package ‘CohortSurvival’ ... ** this is package ‘CohortSurvival’ version ‘0.6.2’ ** package ‘CohortSurvival’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CohortSurvival) * installing *source* package ‘CohortCharacteristics’ ... ** this is package ‘CohortCharacteristics’ version ‘0.4.0’ ** package ‘CohortCharacteristics’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CohortCharacteristics) * installing *source* package ‘IncidencePrevalence’ ... ** this is package ‘IncidencePrevalence’ version ‘1.1.0’ ** package ‘IncidencePrevalence’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (IncidencePrevalence) * installing *source* package ‘ResultModelManager’ ... ** this is package ‘ResultModelManager’ version ‘0.5.11’ ** package ‘ResultModelManager’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading R6Class ConnectionHandler: finalize() method is public, but it should be private as of R6 2.4.0. This code will continue to work, but in a future version of R6, finalize() will be required to be private. R6Class DataMigrationManager: finalize() method is public, but it should be private as of R6 2.4.0. This code will continue to work, but in a future version of R6, finalize() will be required to be private. R6Class QueryNamespace: finalize() method is public, but it should be private as of R6 2.4.0. This code will continue to work, but in a future version of R6, finalize() will be required to be private. ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ResultModelManager) begin installing package ‘CohortGenerator’ * installing *source* package ‘DrugUtilisation’ ... ** this is package ‘DrugUtilisation’ version ‘0.8.2’ ** package ‘DrugUtilisation’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DrugUtilisation) * installing *source* package ‘CohortConstructor’ ... ** this is package ‘CohortConstructor’ version ‘0.3.5’ ** package ‘CohortConstructor’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CohortConstructor) begin installing package ‘OmopSketch’ * installing *source* package ‘bigrquery’ ... ** this is package ‘bigrquery’ version ‘1.5.1’ ** package ‘bigrquery’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-16) 14.2.0’ using C++ compiler: ‘g++-14 (Debian 14.2.0-16) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpJumYNT/R.INSTALL27f9071cf4a09d/bigrquery/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/cli/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/cpp11/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rapidjsonr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c BqField.cpp -o BqField.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/cli/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/cpp11/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rapidjsonr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c base64.c -o base64.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/cli/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/cpp11/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/rapidjsonr/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c cpp11.cpp -o cpp11.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o bigrquery.so BqField.o base64.o cpp11.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpJumYNT/R.INSTALL27f9071cf4a09d/bigrquery/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-bigrquery/00new/bigrquery/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bigrquery) * installing *source* package ‘OmopSketch’ ... ** this is package ‘OmopSketch’ version ‘0.2.2’ ** package ‘OmopSketch’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (OmopSketch) * installing *source* package ‘CohortGenerator’ ... ** this is package ‘CohortGenerator’ version ‘0.11.2’ ** package ‘CohortGenerator’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CohortGenerator) checking CDMConnector_2.0.0.tar.gz ... checking CohortCharacteristics_0.4.0.tar.gz ... checking CohortConstructor_0.3.5.tar.gz ... checking CohortSurvival_0.6.2.tar.gz ... checking CohortSymmetry_0.2.1.tar.gz ... checking DrugExposureDiagnostics_1.1.1.tar.gz ... checking DrugUtilisation_0.8.2.tar.gz ... checking IncidencePrevalence_1.1.0.tar.gz ... checking OmopSketch_0.2.2.tar.gz ... checking PatientProfiles_1.2.3.tar.gz ... checking TestGenerator_0.3.3.tar.gz ... checking CodelistGenerator_3.4.0.tar.gz ... checking OmopViewer_0.2.0.tar.gz ... checking PhenotypeR_0.1.3.tar.gz ... checking TreatmentPatterns_3.0.0.tar.gz ... Depends: Package: CDMConnector Depends: R (>= 4.1.0) Imports: dplyr, dbplyr (>= 2.5.0), DBI (>= 0.3.0), checkmate, cli, purrr, rlang, tidyselect, glue, methods, withr, lifecycle, stringr, stringi, generics, tidyr, jsonlite, readr, omopgenerics (>= 1.0.0) Timings: user system elapsed CDMConnector 325.624 24.781 392.348 Results: Check status summary: ERROR NOTE OK Source packages 0 0 1 Reverse depends 5 3 6 Check results summary: CDMConnector ... OK rdepends_CodelistGenerator ... OK rdepends_CohortCharacteristics ... ERROR * checking DESCRIPTION meta-information ... NOTE * checking dependencies in R code ... WARNING * checking examples ... [2s/2s] ERROR * checking tests ... [104s/57s] ERROR rdepends_CohortConstructor ... OK rdepends_CohortSurvival ... NOTE * checking DESCRIPTION meta-information ... NOTE rdepends_CohortSymmetry ... OK rdepends_DrugExposureDiagnostics ... OK rdepends_DrugUtilisation ... NOTE * checking DESCRIPTION meta-information ... NOTE rdepends_IncidencePrevalence ... OK rdepends_OmopSketch ... ERROR * checking re-building of vignette outputs ... [194s/190s] ERROR rdepends_OmopViewer ... NOTE * checking DESCRIPTION meta-information ... NOTE rdepends_PatientProfiles ... ERROR * checking DESCRIPTION meta-information ... NOTE * checking dependencies in R code ... WARNING * checking tests ... [55s/34s] ERROR * checking re-building of vignette outputs ... [37s/38s] ERROR rdepends_PhenotypeR ... OK rdepends_TestGenerator ... ERROR * checking whether package ‘TestGenerator’ can be installed ... [1s/1s] ERROR rdepends_TreatmentPatterns ... ERROR * checking tests ... [39s/26s] ERROR Check results changes: Package: CohortCharacteristics Check: dependencies in R code New result: WARNING Package: CohortCharacteristics Check: examples New result: ERROR Package: CohortCharacteristics Check: tests New result: ERROR Package: IncidencePrevalence [Old version: 1.0.0, New version: 1.1.0] Check: DESCRIPTION meta-information Old result: NOTE New result: OK Package: OmopSketch Check: re-building of vignette outputs New result: ERROR Package: PatientProfiles Check: dependencies in R code New result: WARNING Package: PatientProfiles Check: re-building of vignette outputs New result: ERROR Package: PatientProfiles Check: tests New result: ERROR Package: TestGenerator Check: whether package can be installed New result: ERROR Package: TreatmentPatterns Check: tests New result: ERROR