# Test DBI functions we rely on # DBI::dbRemoveTable # DBI::dbWriteTable (using temporary and overwrite arguments) test_dbi <- function(con, cdm_schema, write_schema) { df <- dplyr::tibble( alogical = TRUE, achar = "a", aint = 1L, afloat = 1.5 ) # TODO make sure that overwrite works if ("temp_test" %in% listTables(con, write_schema)) { DBI::dbRemoveTable(con, inSchema(schema = write_schema, table = "temp_test", dbms = dbms(con))) # DBI::dbRemoveTable(con, DBI::Id(write_schema, "temp_test")) } # if (methods::is(con, "DatabaseConnectorConnection")) { # database connector turns logical types to integers and gives a warning # expect_warning( # DBI::dbWriteTable(con, inSchema(schema = write_schema, table = "temp_test", dbms = dbms(con)), df), # "logical" # ) # } else { DBI::dbWriteTable(con, inSchema(schema = write_schema, table = "temp_test", dbms = dbms(con)), df) # DBI::dbWriteTable(con, DBI::Id(write_schema, "temp_test"), df) # } expect_no_error({ DBI::dbWriteTable(con, inSchema(schema = write_schema, table = "temp_test", dbms = dbms(con)), df, overwrite = T) # DBI::dbWriteTable(con, DBI::Id(write_schema, "temp_test"), df, overwrite = T) }) expect_true("temp_test" %in% listTables(con, schema = write_schema)) # nm <- paste(c(write_schema, "temp_test"), collapse = ".") # duckdb and snowflake do not support the I() syntax # db <- {if (dbms(con) != "duckdb") dplyr::tbl(con, I(nm)) else dplyr::tbl(con, nm)} %>% db <- dplyr::tbl(con, inSchema(schema = write_schema, table = "temp_test", dbms = dbms(con))) %>% dplyr::collect() %>% dplyr::tibble() %>% dplyr::select("alogical", "achar", "aint", "afloat") # bigquery can return columns in any order apparently # TODO open issue on bigrquery about columns being returned in any order. # TODO: There is an issue with oracle's odbc type conversion if (CDMConnector::dbms(con) == "oracle") { db$alogical <- as.logical(db$alogical) db$aint <- as.integer(db$aint) } if (methods::is(con, "DatabaseConnectorConnection")) { # logical types not supported expect_true(all.equal(df[,-1], db[,-1])) } else { expect_true(all.equal(df, db)) } # table names can be uppercase! (e.g. Oracle) table_names <- listTables(con, cdm_schema) person_table_name <- table_names[tolower(table_names) == "person"] stopifnot(length(person_table_name) == 1) nm <- paste(c(cdm_schema, person_table_name), collapse = ".") # person <- {if (dbms(con) != "duckdb") dplyr::tbl(con, I(nm)) else dplyr::tbl(con, nm)} %>% person <- dplyr::tbl(con, inSchema(schema = write_schema, table = "temp_test", dbms = dbms(con))) %>% head(1) %>% dplyr::collect() expect_true(nrow(person) == 1) # DBI::dbRemoveTable(con, DBI::Id(write_schema, "temp_test")) DBI::dbRemoveTable(con, inSchema(schema = write_schema, table = "temp_test", dbms = dbms(con))) # TODO add this test # DBI::dbRemoveTable(con, DBI::Id(schema = write_schema, table = "temp_test")) # expect_false("temp_test" %in% listTables(con, schema = write_schema)) # # expect_no_error( # DBI::dbCreateTable(con, # inSchema(schema = write_schema, table = "temp_test", dbms = dbms(con)), # fields = c(speed = "integer", dist = "integer")) # ) # # # bigquery gives warning # expect_no_error( # DBI::dbAppendTable(con, # name = inSchema(schema = write_schema, table = "temp_test", dbms = dbms(con)), # value = cars) # ) # # error on bigquery # # DBI::dbRemoveTable(con, inSchema(schema = write_schema, table = "temp_test", dbms = dbms(con))) } # dbToTest = c("") # dbtype = "snowflake" for (dbtype in dbToTest) { test_that(glue::glue("{dbtype} - dbi"), { if (!(dbtype %in% ciTestDbs)) skip_on_ci() if (dbtype != "duckdb") skip_on_cran() else skip_if_not_installed("duckdb") write_schema <- get_write_schema(dbtype) # Note: DBI does not need to support the write prefix if ("prefix" %in% names(write_schema)) { write_schema <- write_schema[names(write_schema) != "prefix"] } cdm_schema <- get_cdm_schema(dbtype) con <- get_connection(dbtype, DatabaseConnector = testUsingDatabaseConnector) skip_if(any(write_schema == "") || any(cdm_schema == "") || is.null(con)) test_dbi(con, cdm_schema, write_schema) disconnect(con) }) } # DBI::dbexists table does not seem to work on snowflake with odbc using an Id # TODO test overwrite in dbWriteTable - seems to be failing for snowflake