* using log directory 'd:/RCompile/CRANincoming/R-devel/CDMConnector.Rcheck' * using R Under development (unstable) (2024-12-17 r87446 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.3.0 GNU Fortran (GCC) 13.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'CDMConnector/DESCRIPTION' ... OK * this is package 'CDMConnector' version '1.7.0' * package encoding: UTF-8 * checking CRAN incoming feasibility ... [11s] OK * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'CDMConnector' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for future file timestamps ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [10s] NOTE ensureInstalled: no visible global function definition for 'menu' ensureInstalled: no visible global function definition for 'install.packages' Undefined global functions or variables: install.packages menu Consider adding importFrom("utils", "install.packages", "menu") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... WARNING Undocumented arguments in Rd file 'cdmFromCon.Rd' 'cdm_schema' 'write_schema' 'cohort_tables' 'cdm_version' 'cdm_name' 'achilles_schema' '.soft_validation' 'write_prefix' Undocumented arguments in Rd file 'eunomiaDir.Rd' 'dataset_name' Functions with \usage entries need to have the appropriate \alias entries, and all their arguments documented. The \usage entries must correspond to syntactically valid R code. See chapter 'Writing R documentation files' in the 'Writing R Extensions' manual. * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking R/sysdata.rda ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... WARNING '::' or ':::' import not declared from: 'fs' * checking tests ... [187s] OK Running 'testthat.R' [187s] * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [22s] OK * checking PDF version of manual ... [19s] OK * checking HTML version of manual ... OK * DONE Status: 2 WARNINGs, 1 NOTE