downloading reverse dependencies ... downloading CohortCharacteristics_0.4.0.tar.gz ... ok downloading CohortConstructor_0.3.3.tar.gz ... ok downloading CohortSurvival_0.6.1.tar.gz ... ok downloading CohortSymmetry_0.1.4.tar.gz ... ok downloading DrugExposureDiagnostics_1.0.10.tar.gz ... ok downloading DrugUtilisation_0.7.1.tar.gz ... ok downloading IncidencePrevalence_0.9.0.tar.gz ... ok downloading OmopSketch_0.1.2.tar.gz ... ok downloading PatientProfiles_1.2.2.tar.gz ... ok downloading TestGenerator_0.3.3.tar.gz ... ok downloading CodelistGenerator_3.3.1.tar.gz ... ok downloading OmopViewer_0.2.0.tar.gz ... ok downloading TreatmentPatterns_2.7.0.tar.gz ... ok installing dependencies ‘Andromeda’, ‘Capr’, ‘CDMConnector’, ‘CirceR’, ‘CodelistGenerator’, ‘CohortCharacteristics’, ‘CohortConstructor’, ‘CohortGenerator’, ‘CohortSurvival’, ‘DatabaseConnector’, ‘DrugUtilisation’, ‘Eunomia’, ‘IncidencePrevalence’, ‘omock’, ‘OmopSketch’, ‘PatientProfiles’, ‘sunburstR’, ‘visOmopResults’ Warning: package ‘Capr’ is not available for this version of R A version of this package for your version of R might be available elsewhere, see the ideas at https://cran.r-project.org/doc/manuals/r-devel/R-admin.html#Installing-packages also installing the dependencies ‘d3r’, ‘CommonDataModel’, ‘ParallelLogger’, ‘ResultModelManager’ begin installing package ‘d3r’ begin installing package ‘ParallelLogger’ begin installing package ‘DatabaseConnector’ begin installing package ‘CirceR’ begin installing package ‘visOmopResults’ begin installing package ‘omock’ begin installing package ‘Andromeda’ begin installing package ‘CDMConnector’ * installing *source* package ‘d3r’ ... ** package ‘d3r’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (d3r) begin installing package ‘sunburstR’ * installing *source* package ‘ParallelLogger’ ... ** package ‘ParallelLogger’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ParallelLogger) * installing *source* package ‘CirceR’ ... ** package ‘CirceR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CirceR) * installing *source* package ‘sunburstR’ ... ** package ‘sunburstR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sunburstR) * installing *source* package ‘omock’ ... ** package ‘omock’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (omock) * installing *source* package ‘visOmopResults’ ... ** package ‘visOmopResults’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (visOmopResults) * installing *source* package ‘Andromeda’ ... ** package ‘Andromeda’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Andromeda) * installing *source* package ‘DatabaseConnector’ ... ** package ‘DatabaseConnector’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DatabaseConnector) begin installing package ‘CommonDataModel’ begin installing package ‘ResultModelManager’ * installing *source* package ‘CDMConnector’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CDMConnector) begin installing package ‘PatientProfiles’ * installing *source* package ‘CommonDataModel’ ... ** package ‘CommonDataModel’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CommonDataModel) begin installing package ‘Eunomia’ * installing *source* package ‘PatientProfiles’ ... ** package ‘PatientProfiles’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (PatientProfiles) begin installing package ‘CodelistGenerator’ begin installing package ‘IncidencePrevalence’ begin installing package ‘CohortConstructor’ begin installing package ‘CohortCharacteristics’ begin installing package ‘CohortSurvival’ * installing *source* package ‘Eunomia’ ... ** package ‘Eunomia’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Eunomia) * installing *source* package ‘ResultModelManager’ ... ** package ‘ResultModelManager’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ResultModelManager) begin installing package ‘CohortGenerator’ * installing *source* package ‘CodelistGenerator’ ... ** package ‘CodelistGenerator’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CodelistGenerator) begin installing package ‘DrugUtilisation’ * installing *source* package ‘CohortSurvival’ ... ** package ‘CohortSurvival’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CohortSurvival) * installing *source* package ‘CohortCharacteristics’ ... ** package ‘CohortCharacteristics’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CohortCharacteristics) * installing *source* package ‘IncidencePrevalence’ ... ** package ‘IncidencePrevalence’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (IncidencePrevalence) * installing *source* package ‘CohortConstructor’ ... ** package ‘CohortConstructor’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CohortConstructor) begin installing package ‘OmopSketch’ * installing *source* package ‘OmopSketch’ ... ** package ‘OmopSketch’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (OmopSketch) * installing *source* package ‘DrugUtilisation’ ... ** package ‘DrugUtilisation’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DrugUtilisation) * installing *source* package ‘CohortGenerator’ ... ** package ‘CohortGenerator’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CohortGenerator) checking CDMConnector_1.6.1.tar.gz ... checking CohortCharacteristics_0.4.0.tar.gz ... checking CohortConstructor_0.3.3.tar.gz ... checking CohortSurvival_0.6.1.tar.gz ... checking CohortSymmetry_0.1.4.tar.gz ... checking DrugExposureDiagnostics_1.0.10.tar.gz ... checking DrugUtilisation_0.7.1.tar.gz ... checking IncidencePrevalence_0.9.0.tar.gz ... checking OmopSketch_0.1.2.tar.gz ... checking PatientProfiles_1.2.2.tar.gz ... checking TestGenerator_0.3.3.tar.gz ... checking CodelistGenerator_3.3.1.tar.gz ... checking OmopViewer_0.2.0.tar.gz ... checking TreatmentPatterns_2.7.0.tar.gz ... Depends: Package: CDMConnector Depends: R (>= 4.0) Imports: dplyr, dbplyr (>= 2.5.0), DBI (>= 0.3.0), checkmate, cli, purrr, rlang, tidyselect, readr, glue, waldo, methods, withr, lifecycle, jsonlite, stringr, stringi, fs, generics, tidyr, omopgenerics (>= 0.1.2) Timings: user system elapsed CDMConnector 350.3 22.896 421.605 Results: Check status summary: ERROR OK Source packages 0 1 Reverse depends 2 11 Check results summary: CDMConnector ... OK rdepends_CodelistGenerator ... OK rdepends_CohortCharacteristics ... OK rdepends_CohortConstructor ... OK rdepends_CohortSurvival ... OK rdepends_CohortSymmetry ... ERROR * checking dependencies in R code ... WARNING * checking tests ... [181s/174s] ERROR * checking re-building of vignette outputs ... [244s/233s] ERROR rdepends_DrugExposureDiagnostics ... OK rdepends_DrugUtilisation ... ERROR * checking dependencies in R code ... WARNING * checking examples ... [1s/1s] ERROR * checking tests ... [192s/103s] ERROR * checking re-building of vignette outputs ... [97s/89s] ERROR rdepends_IncidencePrevalence ... OK rdepends_OmopSketch ... OK rdepends_OmopViewer ... OK rdepends_PatientProfiles ... OK rdepends_TestGenerator ... OK rdepends_TreatmentPatterns ... OK Check results changes: Package: CohortSurvival [Old version: 0.6.0, New version: 0.6.1] Check: dependencies in R code Old result: WARNING New result: OK Package: CohortSurvival [Old version: 0.6.0, New version: 0.6.1] Check: examples Old result: ERROR New result: OK Package: CohortSurvival [Old version: 0.6.0, New version: 0.6.1] Check: re-building of vignette outputs Old result: ERROR New result: OK Package: CohortSurvival [Old version: 0.6.0, New version: 0.6.1] Check: tests Old result: ERROR New result: OK